RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 SFXN4Q6P4A7 337 aa11.89□□□□□ -0.51
CHCHD3-202ENST00000423635 OR4A16Q8NH70 328 aa11.89□□□□□ -0.51
CHCHD3-202ENST00000423635 SLC25A38Q96DW6 304 aa11.89□□□□□ -0.51
CHCHD3-202ENST00000423635 ZNF2Q9BSG1 426 aaPredicted RBP11.89□□□□□ -0.51
CHCHD3-202ENST00000423635 TXNL4BQ9NX01 149 aaKnown RBP11.89□□□□□ -0.51
CHCHD3-202ENST00000423635 RRP15Q9Y3B9 282 aaKnown RBP11.89□□□□□ -0.51
CHCHD3-202ENST00000423635 ZNF705FA8MVS1 300 aaPredicted RBP11.88□□□□□ -0.51
CHCHD3-202ENST00000423635 GPR31O00270 319 aa11.88□□□□□ -0.51
CHCHD3-202ENST00000423635 ZNF705DP0CH99 300 aaPredicted RBP11.88□□□□□ -0.51
CHCHD3-202ENST00000423635 ZNF705BP0CI00 300 aaPredicted RBP11.88□□□□□ -0.51
CHCHD3-202ENST00000423635 PPP5CP53041 499 aa11.88□□□□□ -0.51
CHCHD3-202ENST00000423635 DHRS2Q13268 280 aa11.88□□□□□ -0.51
CHCHD3-202ENST00000423635 PSMG4Q5JS54 123 aa11.88□□□□□ -0.51
CHCHD3-202ENST00000423635 OR5H6Q8NGV6 325 aa11.88□□□□□ -0.51
CHCHD3-202ENST00000423635 RNF167Q9H6Y7 350 aa11.88□□□□□ -0.51
CHCHD3-202ENST00000423635 SEPSECSQ9HD40 501 aaKnown RBP11.88□□□□□ -0.51
CHCHD3-202ENST00000423635 EHFQ9NZC4 300 aa11.88□□□□□ -0.51
CHCHD3-202ENST00000423635 DKK2Q9UBU2 259 aa11.88□□□□□ -0.51
CHCHD3-202ENST00000423635 U3KQE9 123 aa11.88□□□□□ -0.51
CHCHD3-202ENST00000423635 HELTA6NFD8 242 aa11.87□□□□□ -0.51
CHCHD3-202ENST00000423635 INS-IGF2F8WCM5 200 aa11.87□□□□□ -0.51
CHCHD3-202ENST00000423635 H3BMM0 161 aa11.87□□□□□ -0.51
CHCHD3-202ENST00000423635 CLN5O75503 358 aa11.87□□□□□ -0.51
CHCHD3-202ENST00000423635 RFX2P48378 723 aa11.87□□□□□ -0.51
CHCHD3-202ENST00000423635 AP2S1P53680 142 aaPredicted RBP11.87□□□□□ -0.51
CHCHD3-202ENST00000423635 OXA1LQ15070 435 aa11.87□□□□□ -0.51
CHCHD3-202ENST00000423635 H2BFWTQ7Z2G1 175 aa11.87□□□□□ -0.51
CHCHD3-202ENST00000423635 NARS2Q96I59 477 aaKnown RBP11.87□□□□□ -0.51
CHCHD3-202ENST00000423635 NIPSNAP3BQ9BS92 247 aa11.87□□□□□ -0.51
CHCHD3-202ENST00000423635 SCRT2Q9NQ03 307 aa11.87□□□□□ -0.51
CHCHD3-202ENST00000423635 TEX48A0A1B0GUV7 120 aa11.86□□□□□ -0.51
CHCHD3-202ENST00000423635 EBAG9O00559 213 aa11.86□□□□□ -0.51
CHCHD3-202ENST00000423635 IGKV1-39P01597 117 aa11.86□□□□□ -0.51
CHCHD3-202ENST00000423635 IGKV1D-39P04432 117 aa11.86□□□□□ -0.51
CHCHD3-202ENST00000423635 EIF2B2P49770 351 aaKnown RBP11.86□□□□□ -0.51
CHCHD3-202ENST00000423635 AQP4P55087 323 aa11.86□□□□□ -0.51
CHCHD3-202ENST00000423635 TMEM230Q96A57 120 aa11.86□□□□□ -0.51
CHCHD3-202ENST00000423635 DIABLOQ9NR28 239 aa11.86□□□□□ -0.51
CHCHD3-202ENST00000423635 MRPL36Q9P0J6 103 aaKnown RBP11.86□□□□□ -0.51
CHCHD3-202ENST00000423635 CORTO00230 105 aa11.86□□□□□ -0.51
CHCHD3-202ENST00000423635 SNCAP37840 140 aa11.86□□□□□ -0.51
CHCHD3-202ENST00000423635 EMP1P54849 157 aa11.86□□□□□ -0.51
CHCHD3-202ENST00000423635 C16orf54Q6UWD8 224 aa11.86□□□□□ -0.51
CHCHD3-202ENST00000423635 OR4X1Q8NH49 305 aa11.86□□□□□ -0.51
CHCHD3-202ENST00000423635 ANAPC10Q9UM13 185 aa11.86□□□□□ -0.51
CHCHD3-202ENST00000423635 RFNGQ9Y644 331 aa11.86□□□□□ -0.51
CHCHD3-202ENST00000423635 MEIS3P1A6NDR6 274 aa11.85□□□□□ -0.51
CHCHD3-202ENST00000423635 SNRPD3P62318 126 aaKnown RBP11.85□□□□□ -0.51
CHCHD3-202ENST00000423635 FAM222AQ5U5X8 452 aa11.85□□□□□ -0.51
CHCHD3-202ENST00000423635 GLMPQ8WWB7 406 aa11.85□□□□□ -0.51
CHCHD3-202ENST00000423635 FXYD6Q9H0Q3 95 aa11.85□□□□□ -0.51
CHCHD3-202ENST00000423635 FNDC4Q9H6D8 234 aaPredicted RBP11.85□□□□□ -0.51
CHCHD3-202ENST00000423635 FAM90A26D6RGX4 464 aa11.84□□□□□ -0.51
CHCHD3-202ENST00000423635 IGKV1-17P01599 117 aa11.84□□□□□ -0.51
CHCHD3-202ENST00000423635 PMP2P02689 132 aa11.84□□□□□ -0.51
CHCHD3-202ENST00000423635 HLA-DRB4P13762 266 aa11.84□□□□□ -0.51
CHCHD3-202ENST00000423635 NAT1P18440 290 aa11.84□□□□□ -0.51
CHCHD3-202ENST00000423635 RPL5P46777 297 aaKnown RBP11.84□□□□□ -0.51
CHCHD3-202ENST00000423635 MLANAQ16655 118 aa11.84□□□□□ -0.51
CHCHD3-202ENST00000423635 C6orf223Q8N319 242 aa11.84□□□□□ -0.51
CHCHD3-202ENST00000423635 OR6F1Q8NGZ6 308 aa11.84□□□□□ -0.51
CHCHD3-202ENST00000423635 IFT46Q9NQC8 304 aa11.84□□□□□ -0.51
CHCHD3-202ENST00000423635 HLA-DRB4X5D2U9 266 aa11.84□□□□□ -0.51
CHCHD3-202ENST00000423635 TRAV30A0A087WSZ9 112 aa11.83□□□□□ -0.52
CHCHD3-202ENST00000423635 SCGB2A1O75556 95 aa11.83□□□□□ -0.52
CHCHD3-202ENST00000423635 RNASE2P10153 161 aaKnown RBP11.83□□□□□ -0.52
CHCHD3-202ENST00000423635 SDC2P34741 201 aa11.83□□□□□ -0.52
CHCHD3-202ENST00000423635 SUB1P53999 127 aaKnown RBP eCLIP11.83□□□□□ -0.523e-9■■■■■ 31.6
CHCHD3-202ENST00000423635 PHLDA2Q53GA4 152 aa11.83□□□□□ -0.52
CHCHD3-202ENST00000423635 SPINK9Q5DT21 86 aa11.83□□□□□ -0.52
CHCHD3-202ENST00000423635 LPCAT3Q6P1A2 487 aa11.83□□□□□ -0.52
CHCHD3-202ENST00000423635 TMEM88Q6PEY1 159 aa11.83□□□□□ -0.52
CHCHD3-202ENST00000423635 TBC1D26Q86UD7 250 aa11.83□□□□□ -0.52
CHCHD3-202ENST00000423635 YTHDF1Q9BYJ9 559 aaKnown RBP11.83□□□□□ -0.52
CHCHD3-202ENST00000423635 TMED3Q9Y3Q3 217 aa11.83□□□□□ -0.52
CHCHD3-202ENST00000423635 NBDYA0A0U1RRE5 68 aa11.82□□□□□ -0.52
CHCHD3-202ENST00000423635 S100GP29377 79 aa11.82□□□□□ -0.52
CHCHD3-202ENST00000423635 NKX2-1P43699 371 aaPredicted RBP11.82□□□□□ -0.52
CHCHD3-202ENST00000423635 HOXA1P49639 335 aaPredicted RBP11.82□□□□□ -0.52
CHCHD3-202ENST00000423635 TAS2R46P59540 309 aa11.82□□□□□ -0.52
CHCHD3-202ENST00000423635 IDNKQ5T6J7 187 aa11.82□□□□□ -0.52
CHCHD3-202ENST00000423635 C15orf53Q8NAA6 179 aa11.82□□□□□ -0.52
CHCHD3-202ENST00000423635 OR5H2Q8NGV7 314 aa11.82□□□□□ -0.52
CHCHD3-202ENST00000423635 MRGPRFQ96AM1 343 aa11.82□□□□□ -0.52
CHCHD3-202ENST00000423635 NRN1Q9NPD7 142 aa11.82□□□□□ -0.52
CHCHD3-202ENST00000423635 BLOC1S6Q9UL45 172 aa11.82□□□□□ -0.52
CHCHD3-202ENST00000423635 SSR3Q9UNL2 185 aa11.82□□□□□ -0.52
CHCHD3-202ENST00000423635 HNRNPCP07910 306 aaKnown RBP eCLIP11.81□□□□□ -0.52
CHCHD3-202ENST00000423635 CLEC2LP0C7M8 214 aa11.81□□□□□ -0.52
CHCHD3-202ENST00000423635 HTN3P15516 51 aa11.81□□□□□ -0.52
CHCHD3-202ENST00000423635 TIGITQ495A1 244 aa11.81□□□□□ -0.52
CHCHD3-202ENST00000423635 NRG4Q8WWG1 115 aa11.81□□□□□ -0.52
CHCHD3-202ENST00000423635 CLUHP3Q96NS8 147 aa11.81□□□□□ -0.52
CHCHD3-202ENST00000423635 A0A0B4J293 547 aa11.8□□□□□ -0.52
CHCHD3-202ENST00000423635 OPRK1P41145 380 aa11.8□□□□□ -0.52
CHCHD3-202ENST00000423635 MXD1Q05195 221 aa11.8□□□□□ -0.52
CHCHD3-202ENST00000423635 IZUMO4Q1ZYL8 232 aa11.8□□□□□ -0.52
CHCHD3-202ENST00000423635 LYSMD2Q8IV50 215 aa11.8□□□□□ -0.52
CHCHD3-202ENST00000423635 SLC35G3Q8N808 338 aa11.8□□□□□ -0.52
CHCHD3-202ENST00000423635 ZNRF2Q8NHG8 242 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms