RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 KRTAP3-3Q9BYR6 98 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 KRTAP3-2Q9BYR7 98 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 RNASE7Q9H1E1 156 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 ZFAND3Q9H8U3 227 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 ST20Q9HBF5 79 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 MED13Q9UHV7 2174 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 IGLC7A0M8Q6 106 aa4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 FAM181BA6NEQ2 426 aa4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 PEX7O00628 323 aa4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 FRMD6-AS1P0C7T7 363 aa4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 SP9P0CG40 484 aa4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 SPINK2P20155 84 aa4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 SUB1P53999 127 aaKnown RBP eCLIP4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 FOXA3P55318 350 aaPredicted RBP4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 ERHP84090 104 aaKnown RBP4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 EDDM3AQ14507 147 aa4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 SSX8Q7RTT4 187 aa4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 TMPRSS7Q7RTY8 843 aa4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 PDPNQ86YL7 162 aa4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 DOLPP1Q86YN1 238 aa4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 ZCCHC24Q8N2G6 241 aaKnown RBP4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 NUP35Q8NFH5 326 aa4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 OR4F17Q8NGA8 305 aa4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 DPF1Q92782 380 aa4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 FXYD5Q96DB9 178 aa4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 NDFIP1Q9BT67 221 aa4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 ZNF430Q9H8G1 570 aaPredicted RBP4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 RNF7Q9UBF6 113 aa4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 COX11Q9Y6N1 276 aa4.65□□□□□ -1.66
CCDC88A-203ENST00000412148 SZT2Q5T011 3432 aa4.65□□□□□ -1.67
CCDC88A-203ENST00000412148 OR7C2O60412 319 aa4.65□□□□□ -1.67
CCDC88A-203ENST00000412148 HOXB4P17483 251 aaPredicted RBP4.65□□□□□ -1.67
CCDC88A-203ENST00000412148 UBE2G1P62253 170 aa4.65□□□□□ -1.67
CCDC88A-203ENST00000412148 RHOGP84095 191 aa4.65□□□□□ -1.67
CCDC88A-203ENST00000412148 SLAQ13239 276 aa4.65□□□□□ -1.67
CCDC88A-203ENST00000412148 ANKRD39Q53RE8 183 aa4.65□□□□□ -1.67
CCDC88A-203ENST00000412148 ETFRF1Q6IPR1 90 aa4.65□□□□□ -1.67
CCDC88A-203ENST00000412148 STPG4Q8N801 248 aa4.65□□□□□ -1.67
CCDC88A-203ENST00000412148 C9orf106Q8NAJ2 232 aa4.65□□□□□ -1.67
CCDC88A-203ENST00000412148 FMC1Q96HJ9 113 aa4.65□□□□□ -1.67
CCDC88A-203ENST00000412148 GAFA1Q96PS6 74 aa4.65□□□□□ -1.67
CCDC88A-203ENST00000412148 ASCL3Q9NQ33 180 aa4.65□□□□□ -1.67
CCDC88A-203ENST00000412148 TNFRSF19Q9NS68 423 aa4.65□□□□□ -1.67
CCDC88A-203ENST00000412148 TRAV17A0A0B4J275 112 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 hADV38S2A0JD32 116 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 C19orf71A6NCJ1 209 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 NKX6-3A6NJ46 265 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 SIAH2O43255 324 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 FABP6P51161 128 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 UBE2L3P68036 154 aaKnown RBP4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 UBE2V1Q13404 147 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 LRRC10Q5BKY1 277 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 FAM120AOSQ5T036 256 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 PET117Q6UWS5 81 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 SPATA12Q7Z6I5 190 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 ZNF738Q8NE65 137 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 NUP37Q8NFH4 326 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 NUDT10Q8NFP7 164 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 OR10X1Q8NGY0 326 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 NUDT11Q96G61 164 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 TRGV9Q99603 122 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 CLEC7AQ9BXN2 247 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 MS4A6AQ9H2W1 248 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 PROCRQ9UNN8 238 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 IGKV1D-37A0A075B6S9 117 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 IGHV2-70DA0A0C4DH43 119 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 A0A1B0GW15 77 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 A6NNC1 897 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 A8MWL6 223 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 M0R296 226 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 CEACAM4O75871 244 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 LTAP01374 205 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 APOA2P02652 100 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 SAA1P0DJI8 122 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 CD33P20138 364 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 HNF1AP20823 631 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 RPL8P62917 257 aaKnown RBP4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 MSMPQ1L6U9 139 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 C10orf113Q5VZT2 155 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 Q6ZN92 141 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 C11orf42Q8N5U0 333 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 RNF152Q8N8N0 203 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 ZNRF1Q8ND25 227 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 TMEM186Q96B77 213 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 SNRNP40Q96DI7 357 aaKnown RBP4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 GPR82Q96P67 336 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 TXN2Q99757 166 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 TMEM70Q9BUB7 260 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 PAXXQ9BUH6 204 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 TMEM14CQ9P0S9 112 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 R4GN57 208 aa4.64□□□□□ -1.67
CCDC88A-203ENST00000412148 CORTO00230 105 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 HSBP1O75506 76 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 AGFG2O95081 481 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 TFF1P04155 84 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 CDKN1BP46527 198 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 HBBP68871 147 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 TNXAQ16473 311 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 GDF5OSQ5U4N7 250 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 LEMD1Q68G75 181 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms