RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 NPIPB13A6NJU9 1138 aa11.43□□□□□ -0.58
COL4A1-201ENST00000375820 NPIPB5A8MRT5 1133 aa11.43□□□□□ -0.58
COL4A1-201ENST00000375820 NCR2O95944 276 aa11.43□□□□□ -0.58
COL4A1-201ENST00000375820 IGLV3-21P80748 117 aaPredicted RBP11.43□□□□□ -0.58
COL4A1-201ENST00000375820 C1orf122Q6ZSJ8 110 aa11.43□□□□□ -0.58
COL4A1-201ENST00000375820 CIARTQ8N365 385 aaPredicted RBP11.43□□□□□ -0.58
COL4A1-201ENST00000375820 RNF125Q96EQ8 232 aa11.43□□□□□ -0.58
COL4A1-201ENST00000375820 IMMP1LQ96LU5 166 aa11.43□□□□□ -0.58
COL4A1-201ENST00000375820 A6NNC1 897 aa11.42□□□□□ -0.58
COL4A1-201ENST00000375820 TIMM23O14925 209 aa11.42□□□□□ -0.58
COL4A1-201ENST00000375820 OTORQ9NRC9 128 aa11.42□□□□□ -0.58
COL4A1-201ENST00000375820 LINC00312Q9Y6C7 94 aa11.42□□□□□ -0.58
COL4A1-201ENST00000375820 COL4A1P02462 1669 aa11.42□□□□□ -0.58
COL4A1-201ENST00000375820 PINLYPA6NC86 204 aa11.42□□□□□ -0.58
COL4A1-201ENST00000375820 ADARB2-AS1A8MUL3 147 aa11.42□□□□□ -0.58
COL4A1-201ENST00000375820 GATD1Q8NB37 220 aa11.42□□□□□ -0.58
COL4A1-201ENST00000375820 SEC16AO15027 2179 aa11.42□□□□□ -0.58
COL4A1-201ENST00000375820 FABP5P3A8MUU1 101 aa11.42□□□□□ -0.58
COL4A1-201ENST00000375820 SAP30O75446 220 aa11.42□□□□□ -0.58
COL4A1-201ENST00000375820 NDPQ00604 133 aa11.42□□□□□ -0.58
COL4A1-201ENST00000375820 C19orf67A6NJJ6 358 aa11.42□□□□□ -0.58
COL4A1-201ENST00000375820 MLNRO43193 412 aa11.42□□□□□ -0.58
COL4A1-201ENST00000375820 IGFL4Q6B9Z1 124 aa11.42□□□□□ -0.58
COL4A1-201ENST00000375820 GTSCR1Q86UQ5 136 aa11.42□□□□□ -0.58
COL4A1-201ENST00000375820 RGPD3A6NKT7 1758 aaPredicted RBP11.42□□□□□ -0.58
COL4A1-201ENST00000375820 UPK2O00526 184 aa11.42□□□□□ -0.58
COL4A1-201ENST00000375820 PTPRFP10586 1907 aa11.42□□□□□ -0.58
COL4A1-201ENST00000375820 COL18A1P39060 1754 aa11.41□□□□□ -0.58
COL4A1-201ENST00000375820 TMEM30BQ3MIR4 351 aa11.41□□□□□ -0.58
COL4A1-201ENST00000375820 RNF182Q8N6D2 247 aa11.41□□□□□ -0.58
COL4A1-201ENST00000375820 UCP1P25874 307 aa11.41□□□□□ -0.58
COL4A1-201ENST00000375820 ERVK11-1P61568 191 aa11.41□□□□□ -0.58
COL4A1-201ENST00000375820 CSRP2Q16527 193 aa11.41□□□□□ -0.58
COL4A1-201ENST00000375820 C10orf55Q5SWW7 151 aa11.41□□□□□ -0.58
COL4A1-201ENST00000375820 SPRR3Q9UBC9 169 aa11.41□□□□□ -0.58
COL4A1-201ENST00000375820 PQLC2LA1A4F0 135 aa11.41□□□□□ -0.58
COL4A1-201ENST00000375820 RNF222A6NCQ9 220 aa11.41□□□□□ -0.58
COL4A1-201ENST00000375820 IQCF6A8MYZ5 107 aa11.41□□□□□ -0.58
COL4A1-201ENST00000375820 MORN2Q502X0 79 aa11.41□□□□□ -0.58
COL4A1-201ENST00000375820 ZNF362Q5T0B9 420 aaPredicted RBP11.41□□□□□ -0.58
COL4A1-201ENST00000375820 ZNF474Q6S9Z5 364 aaPredicted RBP11.41□□□□□ -0.58
COL4A1-201ENST00000375820 FGFBP3Q8TAT2 258 aa11.41□□□□□ -0.58
COL4A1-201ENST00000375820 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.41□□□□□ -0.58
COL4A1-201ENST00000375820 SELLP14151 372 aa11.41□□□□□ -0.58
COL4A1-201ENST00000375820 S100A7L2Q5SY68 101 aa11.41□□□□□ -0.58
COL4A1-201ENST00000375820 C8orf46Q8TAG6 207 aa11.41□□□□□ -0.58
COL4A1-201ENST00000375820 C18orf12Q96KH6 178 aa11.41□□□□□ -0.58
COL4A1-201ENST00000375820 ESPL1Q14674 2120 aa11.41□□□□□ -0.58
COL4A1-201ENST00000375820 SRSF4Q08170 494 aaKnown RBP11.4□□□□□ -0.58
COL4A1-201ENST00000375820 CITED2Q99967 270 aaPredicted RBP11.4□□□□□ -0.58
COL4A1-201ENST00000375820 CST9LQ9H4G1 147 aa11.4□□□□□ -0.58
COL4A1-201ENST00000375820 CABIN1Q9Y6J0 2220 aa11.4□□□□□ -0.58
COL4A1-201ENST00000375820 EPDR1Q9UM22 224 aa11.4□□□□□ -0.58
COL4A1-201ENST00000375820 STAG3L3P0CL85 134 aa11.4□□□□□ -0.58
COL4A1-201ENST00000375820 C5orf24Q7Z6I8 188 aa11.4□□□□□ -0.58
COL4A1-201ENST00000375820 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.4□□□□□ -0.58
COL4A1-201ENST00000375820 PRSS22Q9GZN4 317 aa11.4□□□□□ -0.58
COL4A1-201ENST00000375820 MARF1Q9Y4F3 1742 aaKnown RBP11.4□□□□□ -0.58
COL4A1-201ENST00000375820 THBDP07204 575 aa11.4□□□□□ -0.58
COL4A1-201ENST00000375820 SAMD13Q5VXD3 122 aa11.4□□□□□ -0.58
COL4A1-201ENST00000375820 PSG8Q9UQ74 426 aa11.4□□□□□ -0.58
COL4A1-201ENST00000375820 PDCD11Q14690 1871 aaKnown RBP11.4□□□□□ -0.59
COL4A1-201ENST00000375820 HOXA3O43365 443 aaPredicted RBP11.4□□□□□ -0.59
COL4A1-201ENST00000375820 FOXF2Q12947 444 aa11.4□□□□□ -0.59
COL4A1-201ENST00000375820 ASCL4Q6XD76 172 aa11.4□□□□□ -0.59
COL4A1-201ENST00000375820 GTF3AQ92664 365 aaKnown RBP11.4□□□□□ -0.59
COL4A1-201ENST00000375820 TMEM133Q9H2Q1 129 aa11.4□□□□□ -0.59
COL4A1-201ENST00000375820 SRSF1Q07955 248 aaKnown RBP eCLIP11.39□□□□□ -0.59
COL4A1-201ENST00000375820 TMEM155Q4W5P6 130 aa11.39□□□□□ -0.59
COL4A1-201ENST00000375820 EXOC3-AS1Q8N2X6 119 aa11.39□□□□□ -0.59
COL4A1-201ENST00000375820 FOXD3Q9UJU5 478 aaPredicted RBP11.39□□□□□ -0.59
COL4A1-201ENST00000375820 TRAV8-4A0A0B4J246 113 aa11.39□□□□□ -0.59
COL4A1-201ENST00000375820 C15orf61A6NNL5 157 aa11.39□□□□□ -0.59
COL4A1-201ENST00000375820 BRD3OSQ6XYD6 125 aa11.39□□□□□ -0.59
COL4A1-201ENST00000375820 SLC25A28Q96A46 364 aa11.39□□□□□ -0.59
COL4A1-201ENST00000375820 IGHV1-18A0A0C4DH31 117 aa11.39□□□□□ -0.59
COL4A1-201ENST00000375820 ZNF688P0C7X2 276 aa11.39□□□□□ -0.59
COL4A1-201ENST00000375820 SPATA31B1PQ5VZV4 182 aa11.39□□□□□ -0.59
COL4A1-201ENST00000375820 WBP1Q96G27 269 aa11.39□□□□□ -0.59
COL4A1-201ENST00000375820 ZNF625Q96I27 306 aaPredicted RBP11.39□□□□□ -0.59
COL4A1-201ENST00000375820 CRIM1Q9NZV1 1036 aa11.39□□□□□ -0.59
COL4A1-201ENST00000375820 CCL20P78556 96 aa11.39□□□□□ -0.59
COL4A1-201ENST00000375820 SIGLEC15Q6ZMC9 328 aa11.39□□□□□ -0.59
COL4A1-201ENST00000375820 ANKRD36A6QL64 1941 aa11.39□□□□□ -0.59
COL4A1-201ENST00000375820 COL4A5P29400 1685 aa11.39□□□□□ -0.59
COL4A1-201ENST00000375820 OR2K2Q8NGT1 345 aa11.39□□□□□ -0.59
COL4A1-201ENST00000375820 DPM2O94777 84 aa11.38□□□□□ -0.59
COL4A1-201ENST00000375820 TMEM105Q8N8V8 129 aa11.38□□□□□ -0.59
COL4A1-201ENST00000375820 OCC1Q8TAD7 63 aa11.38□□□□□ -0.59
COL4A1-201ENST00000375820 WFDC1Q9HC57 220 aa11.38□□□□□ -0.59
COL4A1-201ENST00000375820 TUBGCP6Q96RT7 1819 aa11.38□□□□□ -0.59
COL4A1-201ENST00000375820 HIST1H4AP62805 103 aaKnown RBP11.38□□□□□ -0.59
COL4A1-201ENST00000375820 CACNA1IQ9P0X4 2223 aa11.38□□□□□ -0.59
COL4A1-201ENST00000375820 NRN1LQ496H8 165 aa11.38□□□□□ -0.59
COL4A1-201ENST00000375820 METRNQ9UJH8 293 aa11.38□□□□□ -0.59
COL4A1-201ENST00000375820 LAMTOR2Q9Y2Q5 125 aa11.38□□□□□ -0.59
COL4A1-201ENST00000375820 RALGAPA1Q6GYQ0 2036 aa11.38□□□□□ -0.59
COL4A1-201ENST00000375820 TMEM8BA6NDV4 472 aa11.38□□□□□ -0.59
COL4A1-201ENST00000375820 NAPSAO96009 420 aa11.38□□□□□ -0.59
COL4A1-201ENST00000375820 PRDM13Q9H4Q3 707 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms