RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 CDK2AP2O75956 126 aa9.93□□□□□ -0.82
VPS29-201ENST00000360579 FCER2P06734 321 aa9.93□□□□□ -0.82
VPS29-201ENST00000360579 S100GP29377 79 aa9.93□□□□□ -0.82
VPS29-201ENST00000360579 RNF212Q495C1 297 aa9.93□□□□□ -0.82
VPS29-201ENST00000360579 Q6ZRM9 215 aa9.93□□□□□ -0.82
VPS29-201ENST00000360579 H2BFWTQ7Z2G1 175 aa9.93□□□□□ -0.82
VPS29-201ENST00000360579 DCANP1Q8TF63 244 aa9.93□□□□□ -0.82
VPS29-201ENST00000360579 ZNF2Q9BSG1 426 aaPredicted RBP9.93□□□□□ -0.82
VPS29-201ENST00000360579 IFT46Q9NQC8 304 aa9.93□□□□□ -0.82
VPS29-201ENST00000360579 A0A1B0GU03 582 aa9.92□□□□□ -0.82
VPS29-201ENST00000360579 TMEM189A5PLL7 270 aa9.92□□□□□ -0.82
VPS29-201ENST00000360579 CORTO00230 105 aa9.92□□□□□ -0.82
VPS29-201ENST00000360579 TMEM50AO95807 157 aa9.92□□□□□ -0.82
VPS29-201ENST00000360579 SPART-AS1P0CW21 52 aa9.92□□□□□ -0.82
VPS29-201ENST00000360579 CRYBB3P26998 211 aa9.92□□□□□ -0.82
VPS29-201ENST00000360579 SNCAP37840 140 aa9.92□□□□□ -0.82
VPS29-201ENST00000360579 P2RY1P47900 373 aa9.92□□□□□ -0.82
VPS29-201ENST00000360579 HSPE1P61604 102 aaKnown RBP9.92□□□□□ -0.82
VPS29-201ENST00000360579 C1orf134Q5TEV5 83 aa9.92□□□□□ -0.82
VPS29-201ENST00000360579 SLC25A38Q96DW6 304 aa9.92□□□□□ -0.82
VPS29-201ENST00000360579 SCRT1Q9BWW7 348 aa9.92□□□□□ -0.82
VPS29-201ENST00000360579 TEX48A0A1B0GUV7 120 aa9.91□□□□□ -0.82
VPS29-201ENST00000360579 HELTA6NFD8 242 aa9.91□□□□□ -0.82
VPS29-201ENST00000360579 AP2S1P53680 142 aaPredicted RBP9.91□□□□□ -0.82
VPS29-201ENST00000360579 TAS2R46P59540 309 aa9.91□□□□□ -0.82
VPS29-201ENST00000360579 SEC22AQ96IW7 307 aa9.91□□□□□ -0.82
VPS29-201ENST00000360579 RAB40CQ96S21 281 aa9.91□□□□□ -0.82
VPS29-201ENST00000360579 NEU1Q99519 415 aa9.91□□□□□ -0.82
VPS29-201ENST00000360579 SSR3Q9UNL2 185 aa9.91□□□□□ -0.82
VPS29-201ENST00000360579 SMIM9A6NGZ8 99 aa9.9□□□□□ -0.82
VPS29-201ENST00000360579 C16orf90A8MZG2 172 aa9.9□□□□□ -0.82
VPS29-201ENST00000360579 RFX2P48378 723 aa9.9□□□□□ -0.82
VPS29-201ENST00000360579 SUB1P53999 127 aaKnown RBP eCLIP9.9□□□□□ -0.825e-6■■■■■ 28.3
VPS29-201ENST00000360579 SNRPD3P62318 126 aaKnown RBP9.9□□□□□ -0.82
VPS29-201ENST00000360579 DHRS2Q13268 280 aa9.9□□□□□ -0.82
VPS29-201ENST00000360579 PSMG4Q5JS54 123 aa9.9□□□□□ -0.82
VPS29-201ENST00000360579 LPCAT3Q6P1A2 487 aa9.9□□□□□ -0.82
VPS29-201ENST00000360579 MAPKAPK5-AS1Q8N8E1 139 aa9.9□□□□□ -0.82
VPS29-201ENST00000360579 OR5H6Q8NGV6 325 aa9.9□□□□□ -0.82
VPS29-201ENST00000360579 OR5H2Q8NGV7 314 aa9.9□□□□□ -0.82
VPS29-201ENST00000360579 OR6F1Q8NGZ6 308 aa9.9□□□□□ -0.82
VPS29-201ENST00000360579 TMEM230Q96A57 120 aa9.9□□□□□ -0.82
VPS29-201ENST00000360579 DNAH5Q8TE73 4624 aa9.89□□□□□ -0.83
VPS29-201ENST00000360579 HERC1Q15751 4861 aa9.89□□□□□ -0.83
VPS29-201ENST00000360579 MEIS3P1A6NDR6 274 aa9.89□□□□□ -0.83
VPS29-201ENST00000360579 INS-IGF2F8WCM5 200 aa9.89□□□□□ -0.83
VPS29-201ENST00000360579 CLN5O75503 358 aa9.89□□□□□ -0.83
VPS29-201ENST00000360579 SDC2P34741 201 aa9.89□□□□□ -0.83
VPS29-201ENST00000360579 IDNKQ5T6J7 187 aa9.89□□□□□ -0.83
VPS29-201ENST00000360579 FXYD6Q9H0Q3 95 aa9.89□□□□□ -0.83
VPS29-201ENST00000360579 RNF167Q9H6Y7 350 aa9.89□□□□□ -0.83
VPS29-201ENST00000360579 SEPSECSQ9HD40 501 aaKnown RBP9.89□□□□□ -0.83
VPS29-201ENST00000360579 XCL2Q9UBD3 114 aa9.89□□□□□ -0.83
VPS29-201ENST00000360579 AGRNO00468 2067 aa9.89□□□□□ -0.83
VPS29-201ENST00000360579 TMEM127O75204 238 aa9.88□□□□□ -0.83
VPS29-201ENST00000360579 PMP2P02689 132 aa9.88□□□□□ -0.83
VPS29-201ENST00000360579 PSMB9P28065 219 aa9.88□□□□□ -0.83
VPS29-201ENST00000360579 PPP5CP53041 499 aa9.88□□□□□ -0.83
VPS29-201ENST00000360579 FAM3BP58499 235 aaPredicted RBP9.88□□□□□ -0.83
VPS29-201ENST00000360579 MXD1Q05195 221 aa9.88□□□□□ -0.83
VPS29-201ENST00000360579 PHLDA2Q53GA4 152 aa9.88□□□□□ -0.83
VPS29-201ENST00000360579 ZNF705AQ6ZN79 300 aaPredicted RBP9.88□□□□□ -0.83
VPS29-201ENST00000360579 SLC35G3Q8N808 338 aa9.88□□□□□ -0.83
VPS29-201ENST00000360579 OR4X1Q8NH49 305 aa9.88□□□□□ -0.83
VPS29-201ENST00000360579 ANAPC10Q9UM13 185 aa9.88□□□□□ -0.83
VPS29-201ENST00000360579 APOBP04114 4563 aaKnown RBP9.88□□□□□ -0.83
VPS29-201ENST00000360579 TRAV30A0A087WSZ9 112 aa9.87□□□□□ -0.83
VPS29-201ENST00000360579 EMP1P54849 157 aa9.87□□□□□ -0.83
VPS29-201ENST00000360579 GABARAPL2P60520 117 aa9.87□□□□□ -0.83
VPS29-201ENST00000360579 TBC1D26Q86UD7 250 aa9.87□□□□□ -0.83
VPS29-201ENST00000360579 FCGR1BQ92637 280 aa9.87□□□□□ -0.83
VPS29-201ENST00000360579 MRGPRFQ96AM1 343 aa9.87□□□□□ -0.83
VPS29-201ENST00000360579 S100A16Q96FQ6 103 aaKnown RBP9.87□□□□□ -0.83
VPS29-201ENST00000360579 ZNF705FA8MVS1 300 aaPredicted RBP9.86□□□□□ -0.83
VPS29-201ENST00000360579 H3BMM0 161 aa9.86□□□□□ -0.83
VPS29-201ENST00000360579 IGKV1-39P01597 117 aa9.86□□□□□ -0.83
VPS29-201ENST00000360579 IGKV1D-39P04432 117 aa9.86□□□□□ -0.83
VPS29-201ENST00000360579 ZNF705DP0CH99 300 aaPredicted RBP9.86□□□□□ -0.83
VPS29-201ENST00000360579 ZNF705BP0CI00 300 aaPredicted RBP9.86□□□□□ -0.83
VPS29-201ENST00000360579 NAT1P18440 290 aa9.86□□□□□ -0.83
VPS29-201ENST00000360579 OPRK1P41145 380 aa9.86□□□□□ -0.83
VPS29-201ENST00000360579 RPL5P46777 297 aaKnown RBP9.86□□□□□ -0.83
VPS29-201ENST00000360579 HSPA13P48723 471 aa9.86□□□□□ -0.83
VPS29-201ENST00000360579 HOXA1P49639 335 aaPredicted RBP9.86□□□□□ -0.83
VPS29-201ENST00000360579 TNP2Q05952 138 aa9.86□□□□□ -0.83
VPS29-201ENST00000360579 OXA1LQ15070 435 aa9.86□□□□□ -0.83
VPS29-201ENST00000360579 SPINK9Q5DT21 86 aa9.86□□□□□ -0.83
VPS29-201ENST00000360579 NRG4Q8WWG1 115 aa9.86□□□□□ -0.83
VPS29-201ENST00000360579 CNBD2Q96M20 576 aa9.86□□□□□ -0.83
VPS29-201ENST00000360579 NIPSNAP3BQ9BS92 247 aa9.86□□□□□ -0.83
VPS29-201ENST00000360579 PDCD10Q9BUL8 212 aa9.86□□□□□ -0.83
VPS29-201ENST00000360579 DKK2Q9UBU2 259 aa9.86□□□□□ -0.83
VPS29-201ENST00000360579 TMED3Q9Y3Q3 217 aa9.86□□□□□ -0.83
VPS29-201ENST00000360579 RFNGQ9Y644 331 aa9.86□□□□□ -0.83
VPS29-201ENST00000360579 U3KQE9 123 aa9.86□□□□□ -0.83
VPS29-201ENST00000360579 FAM90A26D6RGX4 464 aa9.85□□□□□ -0.83
VPS29-201ENST00000360579 HNRNPCP07910 306 aaKnown RBP eCLIP9.85□□□□□ -0.83
VPS29-201ENST00000360579 CLEC2LP0C7M8 214 aa9.85□□□□□ -0.83
VPS29-201ENST00000360579 RNASE2P10153 161 aaKnown RBP9.85□□□□□ -0.83
VPS29-201ENST00000360579 HLA-DRB4P13762 266 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms