RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 C1orf64Q8NEQ6 169 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 BPIFB6Q8NFQ5 453 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 OR8J3Q8NGG0 315 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 OR10D3Q8NH80 312 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 RAB2BQ8WUD1 216 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 TNFAIP8L1Q8WVP5 186 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 ITLN2Q8WWU7 325 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-201ENST00000326004 AP3S1Q92572 193 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 FGF13Q92913 245 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 STACQ99469 402 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 EBNA1BP2Q99848 306 aaKnown RBP1.69□□□□□ -2.14
HMGB1-201ENST00000326004 REG4Q9BYZ8 158 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 MIXL1Q9H2W2 232 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 LINC00574Q9H8X3 128 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 TMEM138Q9NPI0 162 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 MED11Q9P086 117 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 GSKIPQ9P0R6 139 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 FBXO5Q9UKT4 447 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 U3KQ87 197 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 BIRC6Q9NR09 4857 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 ATMQ13315 3056 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 CELSR2Q9HCU4 2923 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 PLXNB1O43157 2135 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 COL6A5A8TX70 2615 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 ZNF532Q9HCE3 1301 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 ATG2BQ96BY7 2078 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 HIVEP2P31629 2446 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 MYH7BA7E2Y1 1941 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 CSMD2Q7Z408 3487 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 IGHV1-45A0A0A0MS14 117 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 C1orf196B1AJZ1 125 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 KPNA3O00505 521 aaPredicted RBP1.68□□□□□ -2.14
HMGB1-201ENST00000326004 APOC3P02656 99 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 ATP5G1P05496 136 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 CRYBA1P05813 215 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 IGKV4-1P06312 121 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 OR5AC1P0C628 307 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 COX6B1P14854 86 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 CXCL2P19875 107 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 CXCL3P19876 107 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 GZMHP20718 246 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 GADD45AP24522 165 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 PSMA1P25786 263 aaKnown RBP1.68□□□□□ -2.14
HMGB1-201ENST00000326004 CNTFRP26992 372 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 S100A2P29034 98 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 MIPP30301 263 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 S100A11P31949 105 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 PSMD8P48556 350 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 SULT1A2P50226 295 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 ZNF83P51522 516 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 H2BFSP57053 126 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 TMEM33P57088 247 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 RAB5BP61020 215 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 RPS11P62280 158 aaKnown RBP eCLIP1.68□□□□□ -2.14
HMGB1-201ENST00000326004 LSM3P62310 102 aaKnown RBP1.68□□□□□ -2.14
HMGB1-201ENST00000326004 LSM6P62312 80 aaKnown RBP1.68□□□□□ -2.14
HMGB1-201ENST00000326004 CAV1Q03135 178 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 FABP9Q0Z7S8 132 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 SURF2Q15527 256 aaPredicted RBP1.68□□□□□ -2.14
HMGB1-201ENST00000326004 SCGB2B2Q4G0G5 96 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 MESTQ5EB52 335 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 RNASE10Q5GAN6 216 aaKnown RBP1.68□□□□□ -2.14
HMGB1-201ENST00000326004 MRPL2Q5T653 305 aaKnown RBP1.68□□□□□ -2.14
HMGB1-201ENST00000326004 C9orf64Q5T6V5 341 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 HENMT1Q5T8I9 393 aaKnown RBP1.68□□□□□ -2.14
HMGB1-201ENST00000326004 SYPL2Q5VXT5 272 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 FAM104BQ5XKR9 115 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 ZFAND6Q6FIF0 208 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 LAIR2Q6ISS4 152 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 TNFAIP8L2Q6P589 184 aaPredicted RBP1.68□□□□□ -2.14
HMGB1-201ENST00000326004 SCGB1D4Q6XE38 83 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 LINC00299Q6ZSB3 139 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 NAA40Q86UY6 237 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 DEFB119Q8N690 84 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 PACRGLQ8N7B6 248 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 GDPD1Q8N9F7 314 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 LINC00301Q8NCQ3 95 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 TSTD1Q8NFU3 115 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 GPR32P1Q8NGA4 272 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 OR8A1Q8NGG7 326 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 OR8D4Q8NGM9 314 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 OR5K1Q8NHB7 308 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 MCFD2Q8NI22 146 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 C2orf15Q8WU43 125 aaKnown RBP1.68□□□□□ -2.14
HMGB1-201ENST00000326004 EEF1AKMT1Q8WVE0 214 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 REEP6Q96HR9 211 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 PEBP4Q96S96 227 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 VPS25Q9BRG1 176 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 PLA2G12AQ9BZM1 189 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 NKX6-2Q9C056 277 aaPredicted RBP1.68□□□□□ -2.14
HMGB1-201ENST00000326004 FAM60AQ9NP50 221 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 UBQLN4Q9NRR5 601 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 SCP2D1Q9UJQ7 156 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 GNG8Q9UK08 70 aa1.68□□□□□ -2.14
HMGB1-201ENST00000326004 APCP25054 2843 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 MGAQ8IWI9 3026 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 SPAG17Q6Q759 2223 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 TLN2Q9Y4G6 2542 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 A0A096LPI6 279 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 IGKV3D-11A0A0A0MRZ8 115 aa1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms