RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 SHISA3A0PJX4 238 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 SUMO2P61956 95 aaKnown RBP11.17□□□□□ -0.62
RFFL-201ENST00000315249 MINOS1Q5TGZ0 78 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 MINOS1-NBL1R4GNA1 71 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 SNRPEP62304 92 aaKnown RBP11.17□□□□□ -0.62
RFFL-201ENST00000315249 C15orf32Q32M92 178 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 IGFL3Q6UXB1 125 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 DTX1Q86Y01 620 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 PIP4P2Q8N4L2 257 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 CD177Q8N6Q3 437 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 PLXNA2O75051 1894 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 TRBV20OR9-2A0A075B6H5 130 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 H7C2G1 150 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 TNFRSF14Q92956 283 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 NACAE9PAV3 2078 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 PRSS2P07478 247 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 FAM71F2Q6NXP2 309 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 RBFOX2O43251 390 aaKnown RBP eCLIP11.16□□□□□ -0.622e-6■■□□□ 13
RFFL-201ENST00000315249 CBLN2Q8IUK8 224 aa11.16□□□□□ -0.62
RFFL-201ENST00000315249 ZMAT5Q9UDW3 170 aaKnown RBP11.16□□□□□ -0.62
RFFL-201ENST00000315249 H2BFSP57053 126 aa11.16□□□□□ -0.62
RFFL-201ENST00000315249 ERVK11-1P61568 191 aa11.16□□□□□ -0.62
RFFL-201ENST00000315249 RNF114Q9Y508 228 aa11.16□□□□□ -0.62
RFFL-201ENST00000315249 MPTX1A8MV57 137 aa11.16□□□□□ -0.62
RFFL-201ENST00000315249 PRR32B1ATL7 298 aa11.16□□□□□ -0.62
RFFL-201ENST00000315249 C15orf61A6NNL5 157 aa11.16□□□□□ -0.62
RFFL-201ENST00000315249 NDUFS8O00217 210 aa11.16□□□□□ -0.62
RFFL-201ENST00000315249 UCP1P25874 307 aa11.16□□□□□ -0.62
RFFL-201ENST00000315249 PSMG4Q5JS54 123 aa11.16□□□□□ -0.62
RFFL-201ENST00000315249 ZNF362Q5T0B9 420 aaPredicted RBP11.16□□□□□ -0.62
RFFL-201ENST00000315249 TEX38Q6PEX7 206 aa11.16□□□□□ -0.62
RFFL-201ENST00000315249 HEPN1Q6WQI6 88 aa11.16□□□□□ -0.62
RFFL-201ENST00000315249 CENPWQ5EE01 88 aa11.16□□□□□ -0.62
RFFL-201ENST00000315249 DPH3P1Q9H4G8 78 aa11.16□□□□□ -0.62
RFFL-201ENST00000315249 M0R1W7 72 aa11.16□□□□□ -0.62
RFFL-201ENST00000315249 PSPNO60542 156 aa11.16□□□□□ -0.62
RFFL-201ENST00000315249 LAIR2Q6ISS4 152 aa11.16□□□□□ -0.62
RFFL-201ENST00000315249 LHFPL4Q7Z7J7 247 aa11.16□□□□□ -0.62
RFFL-201ENST00000315249 CACNG8Q8WXS5 425 aa11.16□□□□□ -0.62
RFFL-201ENST00000315249 AQP10Q96PS8 301 aa11.16□□□□□ -0.62
RFFL-201ENST00000315249 CEP192Q8TEP8 1941 aa11.15□□□□□ -0.62
RFFL-201ENST00000315249 CCL1P22362 96 aa11.15□□□□□ -0.62
RFFL-201ENST00000315249 MEIG1Q5JSS6 88 aa11.15□□□□□ -0.62
RFFL-201ENST00000315249 ZNF600Q6ZNG1 722 aa11.15□□□□□ -0.62
RFFL-201ENST00000315249 TCF24Q7RTU0 167 aa11.15□□□□□ -0.62
RFFL-201ENST00000315249 TRGV4A0A0C4DH28 118 aa11.15□□□□□ -0.62
RFFL-201ENST00000315249 FHITP49789 147 aa11.15□□□□□ -0.62
RFFL-201ENST00000315249 SAMD13Q5VXD3 122 aa11.15□□□□□ -0.62
RFFL-201ENST00000315249 RNF125Q96EQ8 232 aa11.15□□□□□ -0.62
RFFL-201ENST00000315249 CHAC2Q8WUX2 184 aa11.15□□□□□ -0.62
RFFL-201ENST00000315249 DUTP33316 252 aaKnown RBP11.15□□□□□ -0.63
RFFL-201ENST00000315249 FAM110DQ8TAY7 271 aaPredicted RBP11.14□□□□□ -0.63
RFFL-201ENST00000315249 C12orf57Q99622 126 aa11.14□□□□□ -0.63
RFFL-201ENST00000315249 TXNDC17Q9BRA2 123 aa11.14□□□□□ -0.63
RFFL-201ENST00000315249 RTBDNQ9BSG5 229 aaPredicted RBP11.14□□□□□ -0.63
RFFL-201ENST00000315249 Q9H3A6 140 aa11.14□□□□□ -0.63
RFFL-201ENST00000315249 CD55P08174 381 aa11.14□□□□□ -0.63
RFFL-201ENST00000315249 IFITM3Q01628 133 aa11.14□□□□□ -0.63
RFFL-201ENST00000315249 ZNF415Q09FC8 603 aa11.14□□□□□ -0.63
RFFL-201ENST00000315249 PTPN13Q12923 2485 aa11.14□□□□□ -0.63
RFFL-201ENST00000315249 CR1LQ2VPA4 569 aa11.14□□□□□ -0.63
RFFL-201ENST00000315249 C10orf55Q5SWW7 151 aa11.14□□□□□ -0.63
RFFL-201ENST00000315249 H7C1H1 209 aa11.14□□□□□ -0.63
RFFL-201ENST00000315249 ZNF250P15622 560 aa11.14□□□□□ -0.63
RFFL-201ENST00000315249 IGKV1-12A0A0C4DH73 117 aa11.14□□□□□ -0.63
RFFL-201ENST00000315249 BUB1B-PAK6H3BSN5 160 aa11.14□□□□□ -0.63
RFFL-201ENST00000315249 IGKV1D-12P01611 117 aa11.14□□□□□ -0.63
RFFL-201ENST00000315249 ARL6IP6Q8N6S5 226 aa11.14□□□□□ -0.63
RFFL-201ENST00000315249 RND3P61587 244 aa11.14□□□□□ -0.63
RFFL-201ENST00000315249 BET1LQ9NYM9 111 aa11.14□□□□□ -0.63
RFFL-201ENST00000315249 GRIFINA4D1Z8 144 aa11.14□□□□□ -0.63
RFFL-201ENST00000315249 MIR17HGQ75NE6 70 aa11.14□□□□□ -0.63
RFFL-201ENST00000315249 GAFA1Q96PS6 74 aa11.14□□□□□ -0.63
RFFL-201ENST00000315249 H3BVH4 76 aa11.13□□□□□ -0.63
RFFL-201ENST00000315249 C5orf63A6NC05 138 aa11.13□□□□□ -0.63
RFFL-201ENST00000315249 HGFACQ04756 655 aa11.13□□□□□ -0.63
RFFL-201ENST00000315249 PRO1933Q9H354 126 aa11.13□□□□□ -0.63
RFFL-201ENST00000315249 GGACTQ9BVM4 153 aa11.13□□□□□ -0.63
RFFL-201ENST00000315249 FXYD7P58549 80 aa11.13□□□□□ -0.63
RFFL-201ENST00000315249 SIGLEC15Q6ZMC9 328 aa11.13□□□□□ -0.63
RFFL-201ENST00000315249 VN1R17PQ8TDU5 208 aa11.13□□□□□ -0.63
RFFL-201ENST00000315249 F8VVB4 439 aa11.13□□□□□ -0.63
RFFL-201ENST00000315249 F8VWA3 439 aa11.13□□□□□ -0.63
RFFL-201ENST00000315249 OR5AN1Q8NGI8 311 aa11.13□□□□□ -0.63
RFFL-201ENST00000315249 ATRXP46100 2492 aa11.13□□□□□ -0.63
RFFL-201ENST00000315249 RIPPLY3P57055 190 aa11.13□□□□□ -0.63
RFFL-201ENST00000315249 KIAA1644Q3SXP7 199 aa11.13□□□□□ -0.63
RFFL-201ENST00000315249 KLF17Q5JT82 389 aaPredicted RBP11.13□□□□□ -0.63
RFFL-201ENST00000315249 A0A0A6YYD4 124 aa11.12□□□□□ -0.63
RFFL-201ENST00000315249 FAM209BQ5JX69 171 aa11.12□□□□□ -0.63
RFFL-201ENST00000315249 HIST1H2BAQ96A08 127 aa11.12□□□□□ -0.63
RFFL-201ENST00000315249 IGKV1-27A0A075B6S5 117 aa11.12□□□□□ -0.63
RFFL-201ENST00000315249 PARLQ9H300 379 aa11.12□□□□□ -0.63
RFFL-201ENST00000315249 K7EM74 188 aa11.12□□□□□ -0.63
RFFL-201ENST00000315249 DUSP14O95147 198 aaKnown RBP11.12□□□□□ -0.63
RFFL-201ENST00000315249 VGLL1Q99990 258 aa11.12□□□□□ -0.63
RFFL-201ENST00000315249 ZNF257Q9Y2Q1 563 aa11.12□□□□□ -0.63
RFFL-201ENST00000315249 MALRD1Q5VYJ5 2156 aa11.12□□□□□ -0.63
RFFL-201ENST00000315249 NDPQ00604 133 aa11.12□□□□□ -0.63
RFFL-201ENST00000315249 TOMM7Q9P0U1 55 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms