RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 HSPB7Q9UBY9 170 aa13.99□□□□□ -0.17
CLN3-259ENST00000637551 DNAH3Q8TD57 4116 aa13.98□□□□□ -0.17
CLN3-259ENST00000637551 MFSD2BA6NFX1 497 aa13.98□□□□□ -0.17
CLN3-259ENST00000637551 K7EIM0 57 aa13.98□□□□□ -0.17
CLN3-259ENST00000637551 TRBV12-3P01733 135 aa13.98□□□□□ -0.17
CLN3-259ENST00000637551 ARL3P36405 182 aa13.98□□□□□ -0.17
CLN3-259ENST00000637551 HOXA1P49639 335 aaPredicted RBP13.98□□□□□ -0.17
CLN3-259ENST00000637551 MFAP2P55001 183 aa13.98□□□□□ -0.17
CLN3-259ENST00000637551 ELLP55199 621 aaPredicted RBP13.98□□□□□ -0.17
CLN3-259ENST00000637551 ASAH1Q13510 395 aa13.98□□□□□ -0.17
CLN3-259ENST00000637551 FAM106AQ4KMX7 169 aa13.98□□□□□ -0.17
CLN3-259ENST00000637551 OR2K2Q8NGT1 345 aa13.98□□□□□ -0.17
CLN3-259ENST00000637551 TNFRSF9Q07011 255 aa13.97□□□□□ -0.17
CLN3-259ENST00000637551 IZUMO4Q1ZYL8 232 aa13.97□□□□□ -0.17
CLN3-259ENST00000637551 MZT2BQ6NZ67 158 aa13.97□□□□□ -0.17
CLN3-259ENST00000637551 C19orf35Q6ZS72 473 aa13.97□□□□□ -0.17
CLN3-259ENST00000637551 COQ8AQ8NI60 647 aa13.97□□□□□ -0.17
CLN3-259ENST00000637551 SCARB1Q8WTV0 552 aa13.97□□□□□ -0.17
CLN3-259ENST00000637551 AURKAIP1Q9NWT8 199 aaPredicted RBP13.97□□□□□ -0.17
CLN3-259ENST00000637551 C9orf170A2RU37 121 aa13.96□□□□□ -0.17
CLN3-259ENST00000637551 I3L2K1 104 aa13.96□□□□□ -0.17
CLN3-259ENST00000637551 TGOLN2O43493 480 aa13.96□□□□□ -0.17
CLN3-259ENST00000637551 PITX3O75364 302 aa13.96□□□□□ -0.17
CLN3-259ENST00000637551 SAP30O75446 220 aa13.96□□□□□ -0.17
CLN3-259ENST00000637551 UPK1BO75841 260 aa13.96□□□□□ -0.17
CLN3-259ENST00000637551 IGLV1-51P01701 117 aa13.96□□□□□ -0.17
CLN3-259ENST00000637551 CLEC3BP05452 202 aa13.96□□□□□ -0.17
CLN3-259ENST00000637551 OR4E1P0C645 316 aa13.96□□□□□ -0.17
CLN3-259ENST00000637551 SYNJ2BPP57105 145 aa13.96□□□□□ -0.17
CLN3-259ENST00000637551 DEFA5Q01523 94 aa13.96□□□□□ -0.17
CLN3-259ENST00000637551 DHRS2Q13268 280 aa13.96□□□□□ -0.17
CLN3-259ENST00000637551 C2orf83Q53S99 150 aa13.96□□□□□ -0.17
CLN3-259ENST00000637551 CLEC19AQ6UXS0 136 aa13.96□□□□□ -0.17
CLN3-259ENST00000637551 LYZL2Q7Z4W2 148 aa13.96□□□□□ -0.17
CLN3-259ENST00000637551 LYG2Q86SG7 212 aa13.96□□□□□ -0.17
CLN3-259ENST00000637551 MARC2Q969Z3 335 aa13.96□□□□□ -0.17
CLN3-259ENST00000637551 PALMDQ9NP74 551 aa13.96□□□□□ -0.17
CLN3-259ENST00000637551 U3KQ87 197 aa13.96□□□□□ -0.17
CLN3-259ENST00000637551 SCGB2A1O75556 95 aa13.95□□□□□ -0.18
CLN3-259ENST00000637551 RNASE2P10153 161 aaKnown RBP13.95□□□□□ -0.18
CLN3-259ENST00000637551 ANKRD55Q3KP44 614 aa13.95□□□□□ -0.18
CLN3-259ENST00000637551 RNASEH2CQ8TDP1 164 aaKnown RBP13.95□□□□□ -0.18
CLN3-259ENST00000637551 ZNF436Q9C0F3 470 aaPredicted RBP13.95□□□□□ -0.18
CLN3-259ENST00000637551 C20orf85Q9H1P6 137 aa13.95□□□□□ -0.18
CLN3-259ENST00000637551 HIPK2Q9H2X6 1198 aa13.95□□□□□ -0.18
CLN3-259ENST00000637551 ZNF256Q9Y2P7 627 aaPredicted RBP13.95□□□□□ -0.18
CLN3-259ENST00000637551 MED6O75586 246 aa13.94□□□□□ -0.18
CLN3-259ENST00000637551 TCRBP04435 133 aa13.94□□□□□ -0.18
CLN3-259ENST00000637551 MFAP4P55083 255 aa13.94□□□□□ -0.18
CLN3-259ENST00000637551 KRTAP10-11P60412 298 aa13.94□□□□□ -0.18
CLN3-259ENST00000637551 PLET1Q6UQ28 207 aa13.94□□□□□ -0.18
CLN3-259ENST00000637551 IL34Q6ZMJ4 242 aa13.94□□□□□ -0.18
CLN3-259ENST00000637551 TECRQ9NZ01 308 aaKnown RBP13.94□□□□□ -0.18
CLN3-259ENST00000637551 RPS10-NUDT3A0A1W2PQS6 291 aa13.93□□□□□ -0.18
CLN3-259ENST00000637551 NDUFA4O00483 81 aa13.93□□□□□ -0.18
CLN3-259ENST00000637551 GPR183P32249 361 aa13.93□□□□□ -0.18
CLN3-259ENST00000637551 NPBWR1P48145 328 aa13.93□□□□□ -0.18
CLN3-259ENST00000637551 RELQ04864 619 aaPredicted RBP13.93□□□□□ -0.18
CLN3-259ENST00000637551 SLC24A4Q8NFF2 622 aa13.93□□□□□ -0.18
CLN3-259ENST00000637551 MITD1Q8WV92 249 aa13.93□□□□□ -0.18
CLN3-259ENST00000637551 CIB3Q96Q77 187 aaPredicted RBP13.93□□□□□ -0.18
CLN3-259ENST00000637551 HEYLQ9NQ87 328 aaPredicted RBP13.93□□□□□ -0.18
CLN3-259ENST00000637551 CEBPZOSA8MTT3 80 aa13.92□□□□□ -0.18
CLN3-259ENST00000637551 PPP5D1E7EU14 171 aa13.92□□□□□ -0.18
CLN3-259ENST00000637551 F8W735 103 aaPredicted RBP13.92□□□□□ -0.18
CLN3-259ENST00000637551 MT-CO2P00403 227 aa13.92□□□□□ -0.18
CLN3-259ENST00000637551 CSN3P07498 182 aa13.92□□□□□ -0.18
CLN3-259ENST00000637551 SLC25A4P12235 298 aa13.92□□□□□ -0.18
CLN3-259ENST00000637551 C4orf46Q504U0 113 aa13.92□□□□□ -0.18
CLN3-259ENST00000637551 ETFRF1Q6IPR1 90 aa13.92□□□□□ -0.18
CLN3-259ENST00000637551 DUSP18Q8NEJ0 188 aa13.92□□□□□ -0.18
CLN3-259ENST00000637551 OR1S1Q8NH92 325 aa13.92□□□□□ -0.18
CLN3-259ENST00000637551 TMEM190Q8WZ59 177 aa13.92□□□□□ -0.18
CLN3-259ENST00000637551 MISP3Q96FF7 219 aa13.92□□□□□ -0.18
CLN3-259ENST00000637551 TBC1D24Q9ULP9 559 aa13.92□□□□□ -0.18
CLN3-259ENST00000637551 UFC1Q9Y3C8 167 aa13.92□□□□□ -0.18
CLN3-259ENST00000637551 LINC00854A0A1B0GVQ3 168 aa13.91□□□□□ -0.18
CLN3-259ENST00000637551 FAM240BA0A1B0GVZ2 78 aa13.91□□□□□ -0.18
CLN3-259ENST00000637551 NUPL2O15504 423 aaKnown RBP13.91□□□□□ -0.18
CLN3-259ENST00000637551 OR2C1O95371 312 aa13.91□□□□□ -0.18
CLN3-259ENST00000637551 IFNA21P01568 189 aa13.91□□□□□ -0.18
CLN3-259ENST00000637551 LCN12Q6JVE5 192 aa13.91□□□□□ -0.18
CLN3-259ENST00000637551 DTD1Q8TEA8 209 aa13.91□□□□□ -0.18
CLN3-259ENST00000637551 NUDT15Q9NV35 164 aa13.91□□□□□ -0.18
CLN3-259ENST00000637551 TRAV30A0A087WSZ9 112 aa13.9□□□□□ -0.18
CLN3-259ENST00000637551 C2orf70A6NJV1 201 aa13.9□□□□□ -0.18
CLN3-259ENST00000637551 K7EMT4 169 aa13.9□□□□□ -0.18
CLN3-259ENST00000637551 CTSGP08311 255 aa13.9□□□□□ -0.18
CLN3-259ENST00000637551 C8orf88P0DMB2 117 aa13.9□□□□□ -0.18
CLN3-259ENST00000637551 NPY1RP25929 384 aa13.9□□□□□ -0.18
CLN3-259ENST00000637551 DEFA1P59665 94 aa13.9□□□□□ -0.18
CLN3-259ENST00000637551 DEFA3P59666 94 aa13.9□□□□□ -0.18
CLN3-259ENST00000637551 OR4X1Q8NH49 305 aa13.9□□□□□ -0.18
CLN3-259ENST00000637551 DAZ1Q9NQZ3 744 aaKnown RBP13.9□□□□□ -0.18
CLN3-259ENST00000637551 PRR13Q9NZ81 148 aa13.9□□□□□ -0.18
CLN3-259ENST00000637551 FLVCR2Q9UPI3 526 aa13.9□□□□□ -0.18
CLN3-259ENST00000637551 OR2T8A6NH00 312 aa13.89□□□□□ -0.19
CLN3-259ENST00000637551 C15orf62A8K5M9 175 aa13.89□□□□□ -0.19
CLN3-259ENST00000637551 ANXA7P20073 488 aaKnown RBP13.89□□□□□ -0.19
CLN3-259ENST00000637551 ADMP35318 185 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms