RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 OPN1MW2P0DN77 364 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 OPN1MW3P0DN78 364 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 CTRB1P17538 263 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 RPL29P47914 159 aaKnown RBP8.4□□□□□ -1.06
CLN3-248ENST00000636355 CRIP2P52943 208 aaPredicted RBP8.4□□□□□ -1.06
CLN3-248ENST00000636355 GNB1P62873 340 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 ZNF616Q08AN1 781 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 KLK9Q2XQG4 91 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 KLF17Q5JT82 389 aaPredicted RBP8.4□□□□□ -1.06
CLN3-248ENST00000636355 CYB5R2Q6BCY4 276 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 CTRB2Q6GPI1 263 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 OR5R1Q8NH85 324 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 NANPQ8TBE9 248 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 FAM213BQ8TBF2 198 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 MARC2Q969Z3 335 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 RBMXL1Q96E39 390 aaKnown RBP8.4□□□□□ -1.06
CLN3-248ENST00000636355 RASL11BQ9BPW5 248 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 C19orf24Q9BVV8 132 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 GGTLC1Q9BX51 225 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 SMDT1Q9H4I9 107 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 ZNF580Q9UK33 172 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 KLK9Q9UKQ9 250 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 CCDC168Q8NDH2 2452 aa8.4□□□□□ -1.07
CLN3-248ENST00000636355 ABCA1O95477 2261 aa8.4□□□□□ -1.07
CLN3-248ENST00000636355 SMCO3A2RU48 225 aa8.39□□□□□ -1.07
CLN3-248ENST00000636355 NCBP2LA6PVI3 153 aaKnown RBP8.39□□□□□ -1.07
CLN3-248ENST00000636355 SEC14L6B5MCN3 397 aa8.39□□□□□ -1.07
CLN3-248ENST00000636355 TSPAN15O95858 294 aa8.39□□□□□ -1.07
CLN3-248ENST00000636355 AREGP15514 252 aa8.39□□□□□ -1.07
CLN3-248ENST00000636355 M6PRP20645 277 aa8.39□□□□□ -1.07
CLN3-248ENST00000636355 TAGLN2P37802 199 aaKnown RBP8.39□□□□□ -1.07
CLN3-248ENST00000636355 SELENOTP62341 195 aa8.39□□□□□ -1.07
CLN3-248ENST00000636355 CX3CL1P78423 397 aa8.39□□□□□ -1.07
CLN3-248ENST00000636355 PMS2P11Q13670 270 aa8.39□□□□□ -1.07
CLN3-248ENST00000636355 ACOT6Q3I5F7 207 aaPredicted RBP8.39□□□□□ -1.07
CLN3-248ENST00000636355 RUSC1-AS1Q66K80 236 aa8.39□□□□□ -1.07
CLN3-248ENST00000636355 BRD3OSQ6XYD6 125 aa8.39□□□□□ -1.07
CLN3-248ENST00000636355 C5orf56Q8N8D9 126 aa8.39□□□□□ -1.07
CLN3-248ENST00000636355 THAP8Q8NA92 274 aa8.39□□□□□ -1.07
CLN3-248ENST00000636355 TMEM116Q8NCL8 245 aa8.39□□□□□ -1.07
CLN3-248ENST00000636355 ABHD5Q8WTS1 349 aa8.39□□□□□ -1.07
CLN3-248ENST00000636355 SSMEM1Q8WWF3 244 aa8.39□□□□□ -1.07
CLN3-248ENST00000636355 ZNF48Q96MX3 618 aaPredicted RBP8.39□□□□□ -1.07
CLN3-248ENST00000636355 MGST2Q99735 147 aa8.39□□□□□ -1.07
CLN3-248ENST00000636355 SLC25A33Q9BSK2 321 aa8.39□□□□□ -1.07
CLN3-248ENST00000636355 PBDC1Q9BVG4 233 aa8.39□□□□□ -1.07
CLN3-248ENST00000636355 CSPG4Q6UVK1 2322 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 IGHV7-81A0A0B4J1V7 117 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 CTXND1A0A1B0GTU2 59 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 KRBOX1C9JBD0 128 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 AGPAT2O15120 278 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 NDUFS6O75380 124 aaKnown RBP8.38□□□□□ -1.07
CLN3-248ENST00000636355 SCGB2A1O75556 95 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 H2AFB1P0C5Y9 115 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 HIST1H1BP16401 226 aaKnown RBP8.38□□□□□ -1.07
CLN3-248ENST00000636355 PRR20EP86478 221 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 PRR20CP86479 221 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 PRR20DP86480 221 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 PRR20BP86481 221 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 PRR20AP86496 221 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 GAMTQ14353 236 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 HNF4GQ14541 408 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 FFAR4Q5NUL3 377 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 TTC9CQ8N5M4 171 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 SGMS2Q8NHU3 365 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 PCNPQ8WW12 178 aaKnown RBP8.38□□□□□ -1.07
CLN3-248ENST00000636355 MBD3L1Q8WWY6 194 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 RCC1LQ96I51 464 aaKnown RBP8.38□□□□□ -1.07
CLN3-248ENST00000636355 RPRMQ9NS64 109 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 PLA2G2EQ9NZK7 142 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 THYN1Q9P016 225 aa8.38□□□□□ -1.07
CLN3-248ENST00000636355 FLNAP21333 2647 aaKnown RBP8.37□□□□□ -1.07
CLN3-248ENST00000636355 A6NDX4 124 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 FCN1O00602 326 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 BRI3O95415 125 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 FABP1P07148 127 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 ZP3P21754 424 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 CD24P25063 80 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 PPT1P50897 306 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 B2MP61769 119 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 NDPQ00604 133 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 FBLN7Q53RD9 439 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 ACSM6Q6P461 480 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 FAM110DQ8TAY7 271 aaPredicted RBP8.37□□□□□ -1.07
CLN3-248ENST00000636355 PIFOQ8TCI5 191 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 FAM210AQ96ND0 272 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 CITED4Q96RK1 184 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 ATP6V0BQ99437 205 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 RNF2Q99496 336 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 TRGV9Q99603 122 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 SSX3Q99909 188 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 ACTR3CQ9C0K3 210 aaPredicted RBP8.37□□□□□ -1.07
CLN3-248ENST00000636355 HRH4Q9H3N8 390 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 PRDM13Q9H4Q3 707 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 FNDC4Q9H6D8 234 aaPredicted RBP8.37□□□□□ -1.07
CLN3-248ENST00000636355 PXMP4Q9Y6I8 212 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 ITPR2Q14571 2701 aa8.37□□□□□ -1.07
CLN3-248ENST00000636355 AVPP01185 164 aa8.36□□□□□ -1.07
CLN3-248ENST00000636355 IFNA1P01562 189 aa8.36□□□□□ -1.07
CLN3-248ENST00000636355 DEFA4P12838 97 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms