RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 SULT1A3P0DMM9 295 aa10.53□□□□□ -0.72
UPF1-205ENST00000598209 SULT1A4P0DMN0 295 aa10.53□□□□□ -0.72
UPF1-205ENST00000598209 GP9P14770 177 aa10.53□□□□□ -0.72
UPF1-205ENST00000598209 SNCAP37840 140 aa10.53□□□□□ -0.72
UPF1-205ENST00000598209 FAM106AQ4KMX7 169 aa10.53□□□□□ -0.72
UPF1-205ENST00000598209 LYZL2Q7Z4W2 148 aa10.53□□□□□ -0.72
UPF1-205ENST00000598209 UBAC2Q8NBM4 344 aa10.53□□□□□ -0.72
UPF1-205ENST00000598209 BSCL2Q96G97 398 aaPredicted RBP10.53□□□□□ -0.72
UPF1-205ENST00000598209 ATP6V0BQ99437 205 aa10.53□□□□□ -0.72
UPF1-205ENST00000598209 C7orf50Q9BRJ6 194 aaKnown RBP10.53□□□□□ -0.72
UPF1-205ENST00000598209 LSM4Q9Y4Z0 139 aaKnown RBP10.53□□□□□ -0.72
UPF1-205ENST00000598209 TGP01266 2768 aa10.52□□□□□ -0.73
UPF1-205ENST00000598209 IGHV3-35A0A0C4DH35 117 aa10.52□□□□□ -0.73
UPF1-205ENST00000598209 C2orf70A6NJV1 201 aa10.52□□□□□ -0.73
UPF1-205ENST00000598209 F8W735 103 aaPredicted RBP10.52□□□□□ -0.73
UPF1-205ENST00000598209 NDUFB6O95139 128 aa10.52□□□□□ -0.73
UPF1-205ENST00000598209 NXPH3O95157 252 aa10.52□□□□□ -0.73
UPF1-205ENST00000598209 MT-CO2P00403 227 aa10.52□□□□□ -0.73
UPF1-205ENST00000598209 RNASE2P10153 161 aaKnown RBP10.52□□□□□ -0.73
UPF1-205ENST00000598209 EDN2P20800 178 aa10.52□□□□□ -0.73
UPF1-205ENST00000598209 BTCP35070 178 aa10.52□□□□□ -0.73
UPF1-205ENST00000598209 SUB1P53999 127 aaKnown RBP eCLIP10.52□□□□□ -0.73
UPF1-205ENST00000598209 PPP1R1AQ13522 171 aa10.52□□□□□ -0.73
UPF1-205ENST00000598209 Q56UQ5 140 aa10.52□□□□□ -0.73
UPF1-205ENST00000598209 NMSQ5H8A3 153 aa10.52□□□□□ -0.73
UPF1-205ENST00000598209 SPSB3Q6PJ21 355 aa10.52□□□□□ -0.73
UPF1-205ENST00000598209 ADAMTSL5Q6ZMM2 481 aa10.52□□□□□ -0.73
UPF1-205ENST00000598209 LINC00299Q6ZSB3 139 aa10.52□□□□□ -0.73
UPF1-205ENST00000598209 PINX1Q96BK5 328 aaKnown RBP10.52□□□□□ -0.73
UPF1-205ENST00000598209 PIGBOS1A0A0B4J2F0 54 aa10.51□□□□□ -0.73
UPF1-205ENST00000598209 DUXBA0A1W2PPF3 345 aa10.51□□□□□ -0.73
UPF1-205ENST00000598209 CEBPZOSA8MTT3 80 aa10.51□□□□□ -0.73
UPF1-205ENST00000598209 A8MWP6 167 aa10.51□□□□□ -0.73
UPF1-205ENST00000598209 SFT2D2O95562 160 aa10.51□□□□□ -0.73
UPF1-205ENST00000598209 IGHV3-48P01763 117 aa10.51□□□□□ -0.73
UPF1-205ENST00000598209 FOLR2P14207 255 aa10.51□□□□□ -0.73
UPF1-205ENST00000598209 MFAP4P55083 255 aa10.51□□□□□ -0.73
UPF1-205ENST00000598209 SMCO1Q147U7 214 aa10.51□□□□□ -0.73
UPF1-205ENST00000598209 ANKRD55Q3KP44 614 aa10.51□□□□□ -0.73
UPF1-205ENST00000598209 UNQ9165/PRO28630Q6UXU0 137 aa10.51□□□□□ -0.73
UPF1-205ENST00000598209 DYNLRB2Q8TF09 96 aa10.51□□□□□ -0.73
UPF1-205ENST00000598209 CHRDL1Q9BU40 450 aa10.51□□□□□ -0.73
UPF1-205ENST00000598209 ZNF436Q9C0F3 470 aaPredicted RBP10.51□□□□□ -0.73
UPF1-205ENST00000598209 CACFD1Q9UGQ2 172 aa10.51□□□□□ -0.73
UPF1-205ENST00000598209 FLVCR2Q9UPI3 526 aa10.51□□□□□ -0.73
UPF1-205ENST00000598209 TMEM213A2RRL7 107 aa10.5□□□□□ -0.73
UPF1-205ENST00000598209 CORTO00230 105 aa10.5□□□□□ -0.73
UPF1-205ENST00000598209 PLA2G10O15496 165 aa10.5□□□□□ -0.73
UPF1-205ENST00000598209 CBLN1P23435 193 aa10.5□□□□□ -0.73
UPF1-205ENST00000598209 ADMP35318 185 aa10.5□□□□□ -0.73
UPF1-205ENST00000598209 UBE2MP61081 183 aaKnown RBP10.5□□□□□ -0.73
UPF1-205ENST00000598209 BSXQ3C1V8 233 aa10.5□□□□□ -0.73
UPF1-205ENST00000598209 PVRIGQ6DKI7 326 aa10.5□□□□□ -0.73
UPF1-205ENST00000598209 LCN12Q6JVE5 192 aa10.5□□□□□ -0.73
UPF1-205ENST00000598209 LRTM2Q8N967 370 aa10.5□□□□□ -0.73
UPF1-205ENST00000598209 CACNG8Q8WXS5 425 aa10.5□□□□□ -0.73
UPF1-205ENST00000598209 TXN2Q99757 166 aa10.5□□□□□ -0.73
UPF1-205ENST00000598209 CCDC32Q9BV29 185 aa10.5□□□□□ -0.73
UPF1-205ENST00000598209 PALMDQ9NP74 551 aa10.5□□□□□ -0.73
UPF1-205ENST00000598209 HEYLQ9NQ87 328 aaPredicted RBP10.5□□□□□ -0.73
UPF1-205ENST00000598209 GAR1Q9NY12 217 aaKnown RBP10.5□□□□□ -0.73
UPF1-205ENST00000598209 A0A1B0GU03 582 aa10.49□□□□□ -0.73
UPF1-205ENST00000598209 IZUMO1RA6ND01 250 aa10.49□□□□□ -0.73
UPF1-205ENST00000598209 CTSGP08311 255 aa10.49□□□□□ -0.73
UPF1-205ENST00000598209 FCGR2BP31994 310 aaPredicted RBP10.49□□□□□ -0.73
UPF1-205ENST00000598209 HTR2BP41595 481 aa10.49□□□□□ -0.73
UPF1-205ENST00000598209 TNFRSF9Q07011 255 aa10.49□□□□□ -0.73
UPF1-205ENST00000598209 DEFB114Q30KQ6 69 aa10.49□□□□□ -0.73
UPF1-205ENST00000598209 CD300EQ496F6 205 aaPredicted RBP10.49□□□□□ -0.73
UPF1-205ENST00000598209 TM4SF20Q53R12 229 aa10.49□□□□□ -0.73
UPF1-205ENST00000598209 OR2K2Q8NGT1 345 aa10.49□□□□□ -0.73
UPF1-205ENST00000598209 OR1S1Q8NH92 325 aa10.49□□□□□ -0.73
UPF1-205ENST00000598209 S100ZQ8WXG8 99 aa10.49□□□□□ -0.73
UPF1-205ENST00000598209 TMEM190Q8WZ59 177 aa10.49□□□□□ -0.73
UPF1-205ENST00000598209 B9D2Q9BPU9 175 aa10.49□□□□□ -0.73
UPF1-205ENST00000598209 PTTG2Q9NZH5 202 aa10.49□□□□□ -0.73
UPF1-205ENST00000598209 UFC1Q9Y3C8 167 aa10.49□□□□□ -0.73
UPF1-205ENST00000598209 SMAD5-AS1Q9Y6J3 95 aa10.49□□□□□ -0.73
UPF1-205ENST00000598209 C9orf170A2RU37 121 aa10.48□□□□□ -0.73
UPF1-205ENST00000598209 NDUFA4O00483 81 aa10.48□□□□□ -0.73
UPF1-205ENST00000598209 NUPL2O15504 423 aaKnown RBP10.48□□□□□ -0.73
UPF1-205ENST00000598209 LYRM1O43325 122 aa10.48□□□□□ -0.73
UPF1-205ENST00000598209 GNG7O60262 68 aa10.48□□□□□ -0.73
UPF1-205ENST00000598209 ELLP55199 621 aaPredicted RBP10.48□□□□□ -0.73
UPF1-205ENST00000598209 CD69Q07108 199 aa10.48□□□□□ -0.73
UPF1-205ENST00000598209 C11orf87Q6NUJ2 197 aa10.48□□□□□ -0.73
UPF1-205ENST00000598209 UXS1Q8NBZ7 420 aa10.48□□□□□ -0.73
UPF1-205ENST00000598209 DUSP18Q8NEJ0 188 aa10.48□□□□□ -0.73
UPF1-205ENST00000598209 SLC24A4Q8NFF2 622 aa10.48□□□□□ -0.73
UPF1-205ENST00000598209 HIPK2Q9H2X6 1198 aa10.48□□□□□ -0.73
UPF1-205ENST00000598209 BATF3Q9NR55 127 aa10.48□□□□□ -0.73
UPF1-205ENST00000598209 TECRQ9NZ01 308 aaKnown RBP10.48□□□□□ -0.73
UPF1-205ENST00000598209 HSPB7Q9UBY9 170 aa10.48□□□□□ -0.73
UPF1-205ENST00000598209 HOXB5P09067 269 aa10.47□□□□□ -0.73
UPF1-205ENST00000598209 OR4E1P0C645 316 aa10.47□□□□□ -0.73
UPF1-205ENST00000598209 ANXA7P20073 488 aaKnown RBP10.47□□□□□ -0.73
UPF1-205ENST00000598209 OPRK1P41145 380 aa10.47□□□□□ -0.73
UPF1-205ENST00000598209 NPBWR1P48145 328 aa10.47□□□□□ -0.73
UPF1-205ENST00000598209 RELQ04864 619 aaPredicted RBP10.47□□□□□ -0.73
UPF1-205ENST00000598209 C2orf83Q53S99 150 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms