RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 ENY2Q9NPA8 101 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 BATF3Q9NR55 127 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 C21orf62Q9NYP8 219 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 DUXBA0A1W2PPF3 345 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 F8W735 103 aaPredicted RBP11.09□□□□□ -0.63
VRK3-206ENST00000594090 I3L2K1 104 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 LGALS9O00182 355 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 PLA2G10O15496 165 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 IGLV1-51P01701 117 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 SPNP16150 400 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 SNCAP37840 140 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 UBE2MP61081 183 aaKnown RBP11.09□□□□□ -0.63
VRK3-206ENST00000594090 ANKRD55Q3KP44 614 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 ATP6V0BQ99437 205 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 SIGLEC8Q9NYZ4 499 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 FLVCR2Q9UPI3 526 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 OR2T8A6NH00 312 aa11.08□□□□□ -0.64
VRK3-206ENST00000594090 LYRM1O43325 122 aa11.08□□□□□ -0.64
VRK3-206ENST00000594090 NXPH3O95157 252 aa11.08□□□□□ -0.64
VRK3-206ENST00000594090 LY86O95711 162 aa11.08□□□□□ -0.64
VRK3-206ENST00000594090 RNASE2P10153 161 aaKnown RBP11.08□□□□□ -0.64
VRK3-206ENST00000594090 SMCO1Q147U7 214 aa11.08□□□□□ -0.64
VRK3-206ENST00000594090 PLET1Q6UQ28 207 aa11.08□□□□□ -0.64
VRK3-206ENST00000594090 LRTM2Q8N967 370 aa11.08□□□□□ -0.64
VRK3-206ENST00000594090 PINX1Q96BK5 328 aaKnown RBP11.08□□□□□ -0.64
VRK3-206ENST00000594090 BSCL2Q96G97 398 aaPredicted RBP11.08□□□□□ -0.64
VRK3-206ENST00000594090 CACFD1Q9UGQ2 172 aa11.08□□□□□ -0.64
VRK3-206ENST00000594090 MT-CO2P00403 227 aa11.07□□□□□ -0.64
VRK3-206ENST00000594090 SUB1P53999 127 aaKnown RBP eCLIP11.07□□□□□ -0.64
VRK3-206ENST00000594090 BSXQ3C1V8 233 aa11.07□□□□□ -0.64
VRK3-206ENST00000594090 FAM106AQ4KMX7 169 aa11.07□□□□□ -0.64
VRK3-206ENST00000594090 Q56UQ5 140 aa11.07□□□□□ -0.64
VRK3-206ENST00000594090 PVRIGQ6DKI7 326 aa11.07□□□□□ -0.64
VRK3-206ENST00000594090 SPSB3Q6PJ21 355 aa11.07□□□□□ -0.64
VRK3-206ENST00000594090 UBAC2Q8NBM4 344 aa11.07□□□□□ -0.64
VRK3-206ENST00000594090 IGHV3-35A0A0C4DH35 117 aa11.06□□□□□ -0.64
VRK3-206ENST00000594090 C9orf170A2RU37 121 aa11.06□□□□□ -0.64
VRK3-206ENST00000594090 C2orf70A6NJV1 201 aa11.06□□□□□ -0.64
VRK3-206ENST00000594090 CEBPZOSA8MTT3 80 aa11.06□□□□□ -0.64
VRK3-206ENST00000594090 A8MWP6 167 aa11.06□□□□□ -0.64
VRK3-206ENST00000594090 CORTO00230 105 aa11.06□□□□□ -0.64
VRK3-206ENST00000594090 GP9P14770 177 aa11.06□□□□□ -0.64
VRK3-206ENST00000594090 ANXA7P20073 488 aaKnown RBP11.06□□□□□ -0.64
VRK3-206ENST00000594090 EDN2P20800 178 aa11.06□□□□□ -0.64
VRK3-206ENST00000594090 FCGR2BP31994 310 aaPredicted RBP11.06□□□□□ -0.64
VRK3-206ENST00000594090 TNFRSF9Q07011 255 aa11.06□□□□□ -0.64
VRK3-206ENST00000594090 DCTN2Q13561 401 aaKnown RBP11.06□□□□□ -0.64
VRK3-206ENST00000594090 ADAMTSL5Q6ZMM2 481 aa11.06□□□□□ -0.64
VRK3-206ENST00000594090 CHRDL1Q9BU40 450 aa11.06□□□□□ -0.64
VRK3-206ENST00000594090 ZNF436Q9C0F3 470 aaPredicted RBP11.06□□□□□ -0.64
VRK3-206ENST00000594090 WDR12Q9GZL7 423 aaKnown RBP11.06□□□□□ -0.64
VRK3-206ENST00000594090 HSPB7Q9UBY9 170 aa11.06□□□□□ -0.64
VRK3-206ENST00000594090 A0A1B0GU03 582 aa11.05□□□□□ -0.64
VRK3-206ENST00000594090 ZNF320A2RRD8 509 aa11.05□□□□□ -0.64
VRK3-206ENST00000594090 TMEM213A2RRL7 107 aa11.05□□□□□ -0.64
VRK3-206ENST00000594090 IGHV3-48P01763 117 aa11.05□□□□□ -0.64
VRK3-206ENST00000594090 ADMP35318 185 aa11.05□□□□□ -0.64
VRK3-206ENST00000594090 HTR2BP41595 481 aa11.05□□□□□ -0.64
VRK3-206ENST00000594090 MFAP4P55083 255 aa11.05□□□□□ -0.64
VRK3-206ENST00000594090 DHRS2Q13268 280 aa11.05□□□□□ -0.64
VRK3-206ENST00000594090 DEFB121Q5J5C9 76 aa11.05□□□□□ -0.64
VRK3-206ENST00000594090 UNQ9165/PRO28630Q6UXU0 137 aa11.05□□□□□ -0.64
VRK3-206ENST00000594090 TXN2Q99757 166 aa11.05□□□□□ -0.64
VRK3-206ENST00000594090 C20orf85Q9H1P6 137 aa11.05□□□□□ -0.64
VRK3-206ENST00000594090 HEYLQ9NQ87 328 aaPredicted RBP11.05□□□□□ -0.64
VRK3-206ENST00000594090 GAR1Q9NY12 217 aaKnown RBP11.05□□□□□ -0.64
VRK3-206ENST00000594090 TMED3Q9Y3Q3 217 aa11.05□□□□□ -0.64
VRK3-206ENST00000594090 PITX3O75364 302 aa11.04□□□□□ -0.64
VRK3-206ENST00000594090 OR4E1P0C645 316 aa11.04□□□□□ -0.64
VRK3-206ENST00000594090 SLC25A6P12236 298 aa11.04□□□□□ -0.64
VRK3-206ENST00000594090 FOLR2P14207 255 aa11.04□□□□□ -0.64
VRK3-206ENST00000594090 ZNF846Q147U1 533 aa11.04□□□□□ -0.64
VRK3-206ENST00000594090 LCN12Q6JVE5 192 aa11.04□□□□□ -0.64
VRK3-206ENST00000594090 C11orf87Q6NUJ2 197 aa11.04□□□□□ -0.64
VRK3-206ENST00000594090 LYG2Q86SG7 212 aa11.04□□□□□ -0.64
VRK3-206ENST00000594090 SLC24A4Q8NFF2 622 aa11.04□□□□□ -0.64
VRK3-206ENST00000594090 OR1S1Q8NH92 325 aa11.04□□□□□ -0.64
VRK3-206ENST00000594090 CACNG8Q8WXS5 425 aa11.04□□□□□ -0.64
VRK3-206ENST00000594090 HIPK2Q9H2X6 1198 aa11.04□□□□□ -0.64
VRK3-206ENST00000594090 LSM4Q9Y4Z0 139 aaKnown RBP11.04□□□□□ -0.64
VRK3-206ENST00000594090 NUPL2O15504 423 aaKnown RBP11.03□□□□□ -0.64
VRK3-206ENST00000594090 CTSGP08311 255 aa11.03□□□□□ -0.64
VRK3-206ENST00000594090 HOXB5P09067 269 aa11.03□□□□□ -0.64
VRK3-206ENST00000594090 OPRK1P41145 380 aa11.03□□□□□ -0.64
VRK3-206ENST00000594090 C4orf46Q504U0 113 aa11.03□□□□□ -0.64
VRK3-206ENST00000594090 C2orf83Q53S99 150 aa11.03□□□□□ -0.64
VRK3-206ENST00000594090 GGNBP1Q5YKI7 109 aa11.03□□□□□ -0.64
VRK3-206ENST00000594090 OR2K2Q8NGT1 345 aa11.03□□□□□ -0.64
VRK3-206ENST00000594090 DYNLRB2Q8TF09 96 aa11.03□□□□□ -0.64
VRK3-206ENST00000594090 TMEM190Q8WZ59 177 aa11.03□□□□□ -0.64
VRK3-206ENST00000594090 RBKSQ9H477 322 aa11.03□□□□□ -0.64
VRK3-206ENST00000594090 FNDC4Q9H6D8 234 aaPredicted RBP11.03□□□□□ -0.64
VRK3-206ENST00000594090 PALMDQ9NP74 551 aa11.03□□□□□ -0.64
VRK3-206ENST00000594090 TBC1D24Q9ULP9 559 aa11.03□□□□□ -0.64
VRK3-206ENST00000594090 IZUMO1RA6ND01 250 aa11.02□□□□□ -0.64
VRK3-206ENST00000594090 NDUFA4O00483 81 aa11.02□□□□□ -0.64
VRK3-206ENST00000594090 GNG7O60262 68 aa11.02□□□□□ -0.64
VRK3-206ENST00000594090 UPK1BO75841 260 aa11.02□□□□□ -0.64
VRK3-206ENST00000594090 TCRBP04435 133 aa11.02□□□□□ -0.64
VRK3-206ENST00000594090 CBLN1P23435 193 aa11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms