RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 TGIF2LXQ8IUE1 241 aa8.64□□□□□ -1.03
ZNF540-208ENST00000589857 Q8N7P7 452 aa8.64□□□□□ -1.03
ZNF540-208ENST00000589857 C22orf15Q8WYQ4 148 aa8.64□□□□□ -1.03
ZNF540-208ENST00000589857 NABP2Q9BQ15 211 aa8.64□□□□□ -1.03
ZNF540-208ENST00000589857 SRD5A3Q9H8P0 318 aa8.64□□□□□ -1.03
ZNF540-208ENST00000589857 TECRQ9NZ01 308 aaKnown RBP8.64□□□□□ -1.03
ZNF540-208ENST00000589857 TRAV9-1A0A075B6T8 112 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 PPP5D1E7EU14 171 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 EIF3GO75821 320 aaKnown RBP eCLIP8.63□□□□□ -1.03
ZNF540-208ENST00000589857 ARL14EPLP0DKL9 152 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 HOXA5P20719 270 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 GCHFRP30047 84 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 GALR1P47211 349 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 COMPP49747 757 aaPredicted RBP8.63□□□□□ -1.03
ZNF540-208ENST00000589857 FAM3BP58499 235 aaPredicted RBP8.63□□□□□ -1.03
ZNF540-208ENST00000589857 ERVFRD-1P60508 538 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 SELENOTP62341 195 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 PRR20EP86478 221 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 PRR20CP86479 221 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 PRR20DP86480 221 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 PRR20BP86481 221 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 PRR20AP86496 221 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 ARSJQ5FYB0 599 aaPredicted RBP8.63□□□□□ -1.03
ZNF540-208ENST00000589857 C16orf82Q7Z2V1 217 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 TEX45Q8NA69 505 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 OR1L4Q8NGR5 311 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 TMEM190Q8WZ59 177 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 MBD6Q96DN6 1003 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 TMEM133Q9H2Q1 129 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 NDUFA4L2Q9NRX3 87 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 FUT9Q9Y231 359 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 URGCP-MRPS24S4R325 110 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 SPG11Q96JI7 2443 aa8.63□□□□□ -1.03
ZNF540-208ENST00000589857 DCHS2Q6V1P9 2916 aa8.62□□□□□ -1.03
ZNF540-208ENST00000589857 TGIF2-C20orf24A0A0A6YYL0 155 aa8.62□□□□□ -1.03
ZNF540-208ENST00000589857 MDFIC2A0A1B0GVS7 189 aa8.62□□□□□ -1.03
ZNF540-208ENST00000589857 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.62□□□□□ -1.03
ZNF540-208ENST00000589857 CORTO00230 105 aa8.62□□□□□ -1.03
ZNF540-208ENST00000589857 HMGB3O15347 200 aaKnown RBP8.62□□□□□ -1.03
ZNF540-208ENST00000589857 MMP23AO75900 390 aa8.62□□□□□ -1.03
ZNF540-208ENST00000589857 GOSR1O95249 250 aa8.62□□□□□ -1.03
ZNF540-208ENST00000589857 CXCL1P09341 107 aa8.62□□□□□ -1.03
ZNF540-208ENST00000589857 IGHV1-8P0DP01 117 aa8.62□□□□□ -1.03
ZNF540-208ENST00000589857 RNASE2P10153 161 aaKnown RBP8.62□□□□□ -1.03
ZNF540-208ENST00000589857 CCL3L1P16619 93 aa8.62□□□□□ -1.03
ZNF540-208ENST00000589857 LOXP28300 417 aaPredicted RBP8.62□□□□□ -1.03
ZNF540-208ENST00000589857 CDX1P47902 265 aaPredicted RBP8.62□□□□□ -1.03
ZNF540-208ENST00000589857 BPIFB3P59826 476 aa8.62□□□□□ -1.03
ZNF540-208ENST00000589857 CD69Q07108 199 aa8.62□□□□□ -1.03
ZNF540-208ENST00000589857 C1orf229Q6ZS94 237 aaPredicted RBP8.62□□□□□ -1.03
ZNF540-208ENST00000589857 GATAD1Q8WUU5 269 aa8.62□□□□□ -1.03
ZNF540-208ENST00000589857 TMEM170AQ8WVE7 144 aa8.62□□□□□ -1.03
ZNF540-208ENST00000589857 C11orf52Q96A22 123 aa8.62□□□□□ -1.03
ZNF540-208ENST00000589857 TIMD4Q96H15 378 aa8.62□□□□□ -1.03
ZNF540-208ENST00000589857 PFDN5Q99471 154 aa8.62□□□□□ -1.03
ZNF540-208ENST00000589857 RNF5Q99942 180 aa8.62□□□□□ -1.03
ZNF540-208ENST00000589857 PYGO2Q9BRQ0 406 aa8.62□□□□□ -1.03
ZNF540-208ENST00000589857 RAB1BQ9H0U4 201 aa8.62□□□□□ -1.03
ZNF540-208ENST00000589857 PATZ1Q9HBE1 687 aaKnown RBP8.62□□□□□ -1.03
ZNF540-208ENST00000589857 MIOXQ9UGB7 285 aa8.62□□□□□ -1.03
ZNF540-208ENST00000589857 C9JCJ5 164 aa8.61□□□□□ -1.03
ZNF540-208ENST00000589857 ACTL6BO94805 426 aa8.61□□□□□ -1.03
ZNF540-208ENST00000589857 IGKV1-16P04430 117 aa8.61□□□□□ -1.03
ZNF540-208ENST00000589857 DLX6P56179 175 aa8.61□□□□□ -1.03
ZNF540-208ENST00000589857 ZNF672Q499Z4 452 aaPredicted RBP8.61□□□□□ -1.03
ZNF540-208ENST00000589857 ZNF343Q6P1L6 599 aa8.61□□□□□ -1.03
ZNF540-208ENST00000589857 SLC16A13Q7RTY0 426 aa8.61□□□□□ -1.03
ZNF540-208ENST00000589857 MMD2Q8IY49 270 aa8.61□□□□□ -1.03
ZNF540-208ENST00000589857 MUC15Q8N387 334 aa8.61□□□□□ -1.03
ZNF540-208ENST00000589857 BEND2Q8NDZ0 799 aa8.61□□□□□ -1.03
ZNF540-208ENST00000589857 OR8B3Q8NGG8 313 aa8.61□□□□□ -1.03
ZNF540-208ENST00000589857 OR2T10Q8NGZ9 312 aa8.61□□□□□ -1.03
ZNF540-208ENST00000589857 SSMEM1Q8WWF3 244 aa8.61□□□□□ -1.03
ZNF540-208ENST00000589857 OR8B2Q96RD0 313 aa8.61□□□□□ -1.03
ZNF540-208ENST00000589857 DCAF16Q9NXF7 216 aa8.61□□□□□ -1.03
ZNF540-208ENST00000589857 PITPNC1Q9UKF7 332 aa8.61□□□□□ -1.03
ZNF540-208ENST00000589857 ANKHD1Q8IWZ3 2542 aaKnown RBP8.61□□□□□ -1.03
ZNF540-208ENST00000589857 GGCTO75223 188 aaKnown RBP8.6□□□□□ -1.03
ZNF540-208ENST00000589857 TYMSP04818 313 aa8.6□□□□□ -1.03
ZNF540-208ENST00000589857 PFN1P07737 140 aaKnown RBP8.6□□□□□ -1.03
ZNF540-208ENST00000589857 OR5G3P0C626 314 aa8.6□□□□□ -1.03
ZNF540-208ENST00000589857 NDUFA6P56556 154 aa8.6□□□□□ -1.03
ZNF540-208ENST00000589857 UBE2G2P60604 165 aa8.6□□□□□ -1.03
ZNF540-208ENST00000589857 DNLZQ5SXM8 178 aa8.6□□□□□ -1.03
ZNF540-208ENST00000589857 OR51G1Q8NGK1 321 aa8.6□□□□□ -1.03
ZNF540-208ENST00000589857 OR4P4Q8NGL7 312 aa8.6□□□□□ -1.03
ZNF540-208ENST00000589857 C8orf46Q8TAG6 207 aa8.6□□□□□ -1.03
ZNF540-208ENST00000589857 ABHD5Q8WTS1 349 aa8.6□□□□□ -1.03
ZNF540-208ENST00000589857 NEU4Q8WWR8 484 aaPredicted RBP8.6□□□□□ -1.03
ZNF540-208ENST00000589857 ST6GALNAC6Q969X2 333 aa8.6□□□□□ -1.03
ZNF540-208ENST00000589857 ACY3Q96HD9 319 aa8.6□□□□□ -1.03
ZNF540-208ENST00000589857 SRSF8Q9BRL6 282 aaKnown RBP8.6□□□□□ -1.03
ZNF540-208ENST00000589857 CLEC7AQ9BXN2 247 aa8.6□□□□□ -1.03
ZNF540-208ENST00000589857 ZNF430Q9H8G1 570 aaPredicted RBP8.6□□□□□ -1.03
ZNF540-208ENST00000589857 GAR1Q9NY12 217 aaKnown RBP8.6□□□□□ -1.03
ZNF540-208ENST00000589857 NIPBLQ6KC79 2804 aaeCLIP8.6□□□□□ -1.03
ZNF540-208ENST00000589857 SRRM4A7MD48 611 aaKnown RBP8.59□□□□□ -1.03
ZNF540-208ENST00000589857 NDUFB4O95168 129 aa8.59□□□□□ -1.03
ZNF540-208ENST00000589857 TRGC2P03986 189 aa8.59□□□□□ -1.03
ZNF540-208ENST00000589857 C8orf88P0DMB2 117 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms