RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 H2BFWTQ7Z2G1 175 aa8.68□□□□□ -1.02
LIG3-209ENST00000586435 LYSMD2Q8IV50 215 aa8.68□□□□□ -1.02
LIG3-209ENST00000586435 SAMD12Q8N8I0 201 aa8.68□□□□□ -1.02
LIG3-209ENST00000586435 OR4A16Q8NH70 328 aa8.68□□□□□ -1.02
LIG3-209ENST00000586435 DNAH6Q9C0G6 4158 aa8.68□□□□□ -1.02
LIG3-209ENST00000586435 DNAH10Q8IVF4 4471 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 IGKV3-7A0A075B6H7 116 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 INS-IGF2F8WCM5 200 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 IGKV1-39P01597 117 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 IGKV1D-39P04432 117 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 NPBWR1P48145 328 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 UCP3P55916 312 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 HSPE1P61604 102 aaKnown RBP8.67□□□□□ -1.02
LIG3-209ENST00000586435 ERHP84090 104 aaKnown RBP8.67□□□□□ -1.02
LIG3-209ENST00000586435 TMEM187Q14656 261 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 KCTD21Q4G0X4 260 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 PHLDA2Q53GA4 152 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 TOMM20LQ6UXN7 152 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 TBC1D26Q86UD7 250 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 GBGT1Q8N5D6 347 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 GPX8Q8TED1 209 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 C2CD4CQ8TF44 421 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 ST8SIA2Q92186 375 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 MS4A6AQ9H2W1 248 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 HRH4Q9H3N8 390 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 ZFAND3Q9H8U3 227 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 FBXL17Q9UF56 701 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 HECTD4Q9Y4D8 3996 aa8.67□□□□□ -1.02
LIG3-209ENST00000586435 HERC2O95714 4834 aa8.66□□□□□ -1.02
LIG3-209ENST00000586435 IGHV3OR16-13A0A075B7E8 117 aa8.66□□□□□ -1.02
LIG3-209ENST00000586435 IGHV3-74A0A0B4J1X5 117 aa8.66□□□□□ -1.02
LIG3-209ENST00000586435 C11orf94C9JXX5 98 aa8.66□□□□□ -1.02
LIG3-209ENST00000586435 ST8SIA3O43173 380 aa8.66□□□□□ -1.02
LIG3-209ENST00000586435 ATP6V1G2O95670 118 aa8.66□□□□□ -1.02
LIG3-209ENST00000586435 HLA-DMAP28067 261 aa8.66□□□□□ -1.02
LIG3-209ENST00000586435 TGFBR1P36897 503 aa8.66□□□□□ -1.02
LIG3-209ENST00000586435 RPS19P39019 145 aaKnown RBP8.66□□□□□ -1.02
LIG3-209ENST00000586435 TSPAN5P62079 268 aa8.66□□□□□ -1.02
LIG3-209ENST00000586435 TMEM41BQ5BJD5 291 aa8.66□□□□□ -1.02
LIG3-209ENST00000586435 PVRIGQ6DKI7 326 aa8.66□□□□□ -1.02
LIG3-209ENST00000586435 ZNF600Q6ZNG1 722 aa8.66□□□□□ -1.02
LIG3-209ENST00000586435 DUSP18Q8NEJ0 188 aa8.66□□□□□ -1.02
LIG3-209ENST00000586435 MRGPRFQ96AM1 343 aa8.66□□□□□ -1.02
LIG3-209ENST00000586435 PINX1Q96BK5 328 aaKnown RBP8.66□□□□□ -1.02
LIG3-209ENST00000586435 TMEM231Q9H6L2 316 aa8.66□□□□□ -1.02
LIG3-209ENST00000586435 SCPEP1Q9HB40 452 aa8.66□□□□□ -1.02
LIG3-209ENST00000586435 DNASE2O00115 360 aaPredicted RBP8.65□□□□□ -1.02
LIG3-209ENST00000586435 CORTO00230 105 aa8.65□□□□□ -1.02
LIG3-209ENST00000586435 IGHV3-48P01763 117 aa8.65□□□□□ -1.02
LIG3-209ENST00000586435 DEFB131AP59861 70 aa8.65□□□□□ -1.02
LIG3-209ENST00000586435 PRR20EP86478 221 aa8.65□□□□□ -1.02
LIG3-209ENST00000586435 PRR20CP86479 221 aa8.65□□□□□ -1.02
LIG3-209ENST00000586435 PRR20DP86480 221 aa8.65□□□□□ -1.02
LIG3-209ENST00000586435 PRR20BP86481 221 aa8.65□□□□□ -1.02
LIG3-209ENST00000586435 PRR20AP86496 221 aa8.65□□□□□ -1.02
LIG3-209ENST00000586435 LILRB2Q8N423 598 aa8.65□□□□□ -1.02
LIG3-209ENST00000586435 Q8NAQ8 132 aa8.65□□□□□ -1.02
LIG3-209ENST00000586435 PUS1Q9Y606 427 aaKnown RBP eCLIP8.65□□□□□ -1.02
LIG3-209ENST00000586435 APOHP02749 345 aaPredicted RBP8.64□□□□□ -1.03
LIG3-209ENST00000586435 RCVRNP35243 200 aa8.64□□□□□ -1.03
LIG3-209ENST00000586435 RND3P61587 244 aa8.64□□□□□ -1.03
LIG3-209ENST00000586435 LEMD1Q68G75 181 aa8.64□□□□□ -1.03
LIG3-209ENST00000586435 TRPT1Q86TN4 253 aaKnown RBP8.64□□□□□ -1.03
LIG3-209ENST00000586435 STHQ8IWL8 128 aa8.64□□□□□ -1.03
LIG3-209ENST00000586435 FAM24BQ8N5W8 94 aa8.64□□□□□ -1.03
LIG3-209ENST00000586435 ZNF486Q96H40 463 aaPredicted RBP8.64□□□□□ -1.03
LIG3-209ENST00000586435 GRAMD2BQ96HH9 432 aa8.64□□□□□ -1.03
LIG3-209ENST00000586435 APLNQ9ULZ1 77 aa8.64□□□□□ -1.03
LIG3-209ENST00000586435 A0A1B0GU03 582 aa8.63□□□□□ -1.03
LIG3-209ENST00000586435 A0A1W2PS18 150 aa8.63□□□□□ -1.03
LIG3-209ENST00000586435 ZNF705EA8MWA4 302 aaPredicted RBP8.63□□□□□ -1.03
LIG3-209ENST00000586435 DEFB4AO15263 64 aa8.63□□□□□ -1.03
LIG3-209ENST00000586435 TMEM50AO95807 157 aa8.63□□□□□ -1.03
LIG3-209ENST00000586435 APOA1P02647 267 aa8.63□□□□□ -1.03
LIG3-209ENST00000586435 GIG44P09565 113 aaPredicted RBP8.63□□□□□ -1.03
LIG3-209ENST00000586435 P0C879 139 aa8.63□□□□□ -1.03
LIG3-209ENST00000586435 SPP1P10451 314 aa8.63□□□□□ -1.03
LIG3-209ENST00000586435 MIFP14174 115 aa8.63□□□□□ -1.03
LIG3-209ENST00000586435 SNCAP37840 140 aa8.63□□□□□ -1.03
LIG3-209ENST00000586435 MORN3Q6PF18 240 aaPredicted RBP8.63□□□□□ -1.03
LIG3-209ENST00000586435 SLC35G3Q8N808 338 aa8.63□□□□□ -1.03
LIG3-209ENST00000586435 YIPF6Q96EC8 236 aa8.63□□□□□ -1.03
LIG3-209ENST00000586435 VPS13DQ5THJ4 4388 aa8.63□□□□□ -1.03
LIG3-209ENST00000586435 SMIM31A0A1B0GVY4 71 aa8.62□□□□□ -1.03
LIG3-209ENST00000586435 K7EQG2 157 aa8.62□□□□□ -1.03
LIG3-209ENST00000586435 CLN5O75503 358 aa8.62□□□□□ -1.03
LIG3-209ENST00000586435 SCGB2A1O75556 95 aa8.62□□□□□ -1.03
LIG3-209ENST00000586435 ATG12O94817 140 aa8.62□□□□□ -1.03
LIG3-209ENST00000586435 IGKV1-5P01602 117 aa8.62□□□□□ -1.03
LIG3-209ENST00000586435 RNASE2P10153 161 aaKnown RBP8.62□□□□□ -1.03
LIG3-209ENST00000586435 NPPCP23582 126 aa8.62□□□□□ -1.03
LIG3-209ENST00000586435 CRYBB3P26998 211 aa8.62□□□□□ -1.03
LIG3-209ENST00000586435 SUB1P53999 127 aaKnown RBP eCLIP8.62□□□□□ -1.03
LIG3-209ENST00000586435 RPL11P62913 178 aaKnown RBP8.62□□□□□ -1.03
LIG3-209ENST00000586435 IZUMO4Q1ZYL8 232 aa8.62□□□□□ -1.03
LIG3-209ENST00000586435 LHFPL1Q86WI0 220 aa8.62□□□□□ -1.03
LIG3-209ENST00000586435 METTL26Q96S19 204 aa8.62□□□□□ -1.03
LIG3-209ENST00000586435 RABAC1Q9UI14 185 aa8.62□□□□□ -1.03
LIG3-209ENST00000586435 A0A0B4J293 547 aa8.61□□□□□ -1.03
LIG3-209ENST00000586435 IGHV4-28A0A0C4DH34 117 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 207.4 ms