RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 ODF3L1Q8IXM7 274 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 OR9G1Q8NH87 305 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 LINC00479Q96M42 142 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 hADV38S2A0JD32 116 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 FAM87AP0C7U9 286 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 NMUP48645 174 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 PRRX1P54821 245 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 GFRA1P56159 465 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 OR1L8Q8NGR8 309 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 ZNF703Q9H7S9 590 aaPredicted RBP9.48□□□□□ -0.89
CLN3-238ENST00000569430 CDC42EP3Q9UKI2 254 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 MED12LQ86YW9 2145 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 TRAV9-2A0A087WT02 112 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 TRAV5A0A0B4J249 113 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 M0QZ24 198 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 HYPMO75409 117 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 PYYP10082 97 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 DUTP33316 252 aaKnown RBP9.48□□□□□ -0.89
CLN3-238ENST00000569430 TNFAIP6P98066 277 aaPredicted RBP9.48□□□□□ -0.89
CLN3-238ENST00000569430 TNXAQ16473 311 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 INO80CQ6PI98 192 aaPredicted RBP9.48□□□□□ -0.89
CLN3-238ENST00000569430 SARAFQ96BY9 339 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 ZFHX4Q86UP3 3567 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 ADAMTS9Q9P2N4 1935 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 TBR1Q16650 682 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 NIT1Q86X76 327 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 ARRDC1-AS1Q9H2J1 176 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.47□□□□□ -0.89
CLN3-238ENST00000569430 CA7P43166 264 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 LHX2P50458 406 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 B3GALT5-AS1P59052 145 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 GNG5P63218 68 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 HES1Q14469 280 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 MPV17L2Q567V2 206 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 CCL17Q92583 94 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 CLEC7AQ9BXN2 247 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 PROK2Q9HC23 129 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 HSPB8Q9UJY1 196 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 CFAP47Q6ZTR5 3102 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 TRAV9-1A0A075B6T8 112 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 A0A1W2PS18 150 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 ZNF503-AS2A6NEH8 195 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 TSPOP30536 169 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 LGALS4P56470 323 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 SAPCD1Q5SSQ6 148 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 MOB3BQ86TA1 216 aa9.47□□□□□ -0.89
CLN3-238ENST00000569430 MOSP00540 346 aa9.46□□□□□ -0.89
CLN3-238ENST00000569430 MLANAQ16655 118 aa9.46□□□□□ -0.89
CLN3-238ENST00000569430 VMA21Q3ZAQ7 101 aa9.46□□□□□ -0.89
CLN3-238ENST00000569430 ATP1A1-AS1Q5TC04 95 aa9.46□□□□□ -0.89
CLN3-238ENST00000569430 WFDC8Q8IUA0 241 aa9.46□□□□□ -0.89
CLN3-238ENST00000569430 ITLN1Q8WWA0 313 aa9.46□□□□□ -0.89
CLN3-238ENST00000569430 NAA38Q9BRA0 125 aaKnown RBP9.46□□□□□ -0.89
CLN3-238ENST00000569430 FGF23Q9GZV9 251 aaPredicted RBP9.46□□□□□ -0.89
CLN3-238ENST00000569430 HIF1ANQ9NWT6 349 aa9.46□□□□□ -0.89
CLN3-238ENST00000569430 IZUMO1RA6ND01 250 aa9.46□□□□□ -0.9
CLN3-238ENST00000569430 FRMD6-AS1P0C7T7 363 aa9.46□□□□□ -0.9
CLN3-238ENST00000569430 CLDN18P56856 261 aa9.46□□□□□ -0.9
CLN3-238ENST00000569430 RPL15P61313 204 aaKnown RBP9.46□□□□□ -0.9
CLN3-238ENST00000569430 RELQ04864 619 aaPredicted RBP9.46□□□□□ -0.9
CLN3-238ENST00000569430 MAJINQ3KP22 176 aa9.46□□□□□ -0.9
CLN3-238ENST00000569430 PEAR1Q5VY43 1037 aaPredicted RBP9.46□□□□□ -0.9
CLN3-238ENST00000569430 C11orf1Q9H5F2 150 aa9.46□□□□□ -0.9
CLN3-238ENST00000569430 OSTCQ9NRP0 149 aa9.46□□□□□ -0.9
CLN3-238ENST00000569430 KIR2DL5BA0A0G2JN68 375 aa9.46□□□□□ -0.9
CLN3-238ENST00000569430 KIR2DL5BA0A0G2JPC4 375 aa9.46□□□□□ -0.9
CLN3-238ENST00000569430 PPIAL4DF5H284 164 aa9.46□□□□□ -0.9
CLN3-238ENST00000569430 CCL8P80075 99 aa9.46□□□□□ -0.9
CLN3-238ENST00000569430 NRN1LQ496H8 165 aa9.46□□□□□ -0.9
CLN3-238ENST00000569430 TPTE2P1Q5T6R2 138 aa9.46□□□□□ -0.9
CLN3-238ENST00000569430 AMMECR1LQ6DCA0 310 aa9.46□□□□□ -0.9
CLN3-238ENST00000569430 KIR2DL5AQ8N109 375 aa9.46□□□□□ -0.9
CLN3-238ENST00000569430 LOXL4Q96JB6 756 aa9.46□□□□□ -0.9
CLN3-238ENST00000569430 JPT1Q9UK76 154 aa9.46□□□□□ -0.9
CLN3-238ENST00000569430 hDV102S1A0JD36 115 aa9.45□□□□□ -0.9
CLN3-238ENST00000569430 CORTO00230 105 aa9.45□□□□□ -0.9
CLN3-238ENST00000569430 HLA-DRB1P01911 266 aa9.45□□□□□ -0.9
CLN3-238ENST00000569430 IGLC2P0DOY2 106 aa9.45□□□□□ -0.9
CLN3-238ENST00000569430 IGLC3P0DOY3 106 aa9.45□□□□□ -0.9
CLN3-238ENST00000569430 UBE2V1Q13404 147 aa9.45□□□□□ -0.9
CLN3-238ENST00000569430 COLCA1Q6ZS62 124 aa9.45□□□□□ -0.9
CLN3-238ENST00000569430 DEFB123Q8N688 67 aa9.45□□□□□ -0.9
CLN3-238ENST00000569430 PRSS1P07477 247 aa9.45□□□□□ -0.9
CLN3-238ENST00000569430 TM4SF20Q53R12 229 aa9.45□□□□□ -0.9
CLN3-238ENST00000569430 FAM214BQ7L5A3 538 aa9.45□□□□□ -0.9
CLN3-238ENST00000569430 PERPQ96FX8 193 aa9.45□□□□□ -0.9
CLN3-238ENST00000569430 RCHY1Q96PM5 261 aa9.45□□□□□ -0.9
CLN3-238ENST00000569430 F11RQ9Y624 299 aaKnown RBP9.45□□□□□ -0.9
CLN3-238ENST00000569430 TRBV6-6A0A0A6YYG2 114 aa9.45□□□□□ -0.9
CLN3-238ENST00000569430 MUC21A0A0G2JKD1 596 aa9.45□□□□□ -0.9
CLN3-238ENST00000569430 MUC21A0A140T8X8 626 aa9.45□□□□□ -0.9
CLN3-238ENST00000569430 YPEL3P61236 119 aaPredicted RBP9.45□□□□□ -0.9
CLN3-238ENST00000569430 CX3CL1P78423 397 aa9.45□□□□□ -0.9
CLN3-238ENST00000569430 ZNF146Q15072 292 aa9.45□□□□□ -0.9
CLN3-238ENST00000569430 MUC21Q5SSG8 566 aa9.45□□□□□ -0.9
CLN3-238ENST00000569430 TSKUQ8WUA8 353 aa9.45□□□□□ -0.9
CLN3-238ENST00000569430 EML6Q6ZMW3 1958 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 SH2D7A6NKC9 451 aaPredicted RBP9.44□□□□□ -0.9
CLN3-238ENST00000569430 PEX7O00628 323 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 GFRA3O60609 400 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms