RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 RAB11AP62491 216 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 GNB2P62879 340 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 ZNF273Q14593 569 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 EFNB3Q15768 340 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 RTL8BQ17RB0 113 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 FBXL19-AS1Q494R0 122 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 LRRC10Q5BKY1 277 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 CT45A1Q5HYN5 189 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 FAM201AQ5SY85 155 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 PRAMEF5Q5TYX0 476 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 OR8G2PQ6IF36 304 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 FAM53AQ6NSI3 398 aaPredicted RBP4.77□□□□□ -1.65
VPS39-209ENST00000568029 ADAM5Q6NVV9 412 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 ATRAIDQ6UW56 229 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 TMEM14EPQ6UXP3 125 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 ODF3L1Q8IXM7 274 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 OR10P1Q8NGE3 313 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 CT45A3Q8NHU0 189 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 SFT2D1Q8WV19 159 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 CCL17Q92583 94 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 OR4C12Q96R67 309 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 CCL19Q99731 98 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 TMEM147Q9BVK8 224 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 TMEM106BQ9NUM4 274 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 RPUSD1Q9UJJ7 312 aaKnown RBP4.77□□□□□ -1.65
VPS39-209ENST00000568029 USF3Q68DE3 2245 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 DYSFO75923 2080 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 IGHV4-28A0A0C4DH34 117 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 MEX3AA1L020 520 aaKnown RBP4.76□□□□□ -1.65
VPS39-209ENST00000568029 SHISA9B4DS77 424 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 C17orf112F2Z3M2 114 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 DNASE2O00115 360 aaPredicted RBP4.76□□□□□ -1.65
VPS39-209ENST00000568029 PPIHO43447 177 aaKnown RBP4.76□□□□□ -1.65
VPS39-209ENST00000568029 IFNA1P01562 189 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 SELLP14151 372 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 DAOP14920 347 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 HOXD3P31249 432 aaPredicted RBP4.76□□□□□ -1.65
VPS39-209ENST00000568029 FHITP49789 147 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 PPT1P50897 306 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 ATP5IP56385 69 aaPredicted RBP4.76□□□□□ -1.65
VPS39-209ENST00000568029 RPL31P62899 125 aaKnown RBP4.76□□□□□ -1.65
VPS39-209ENST00000568029 ARL16Q0P5N6 197 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 GUCA2BQ16661 112 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 HFEQ30201 348 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 ODF3L2Q3SX64 289 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 AARDQ4LEZ3 155 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 KHDC3LQ587J8 217 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 RPL39P5Q59GN2 51 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 TMEM41BQ5BJD5 291 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 SOHLH1Q5JUK2 328 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 DHRS7BQ6IAN0 325 aaPredicted RBP4.76□□□□□ -1.65
VPS39-209ENST00000568029 PRSS57Q6UWY2 283 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 SLC25A48Q6ZT89 311 aaKnown RBP4.76□□□□□ -1.65
VPS39-209ENST00000568029 CENPVQ7Z7K6 275 aaPredicted RBP4.76□□□□□ -1.65
VPS39-209ENST00000568029 PUSL1Q8N0Z8 303 aaKnown RBP4.76□□□□□ -1.65
VPS39-209ENST00000568029 LYG1Q8N1E2 194 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 FAM216BQ8N7L0 139 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 ZNF439Q8NDP4 499 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 MBD3L1Q8WWY6 194 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 TAF15Q92804 592 aaKnown RBP eCLIP4.76□□□□□ -1.65
VPS39-209ENST00000568029 ZNF48Q96MX3 618 aaPredicted RBP4.76□□□□□ -1.65
VPS39-209ENST00000568029 ZNF714Q96N38 554 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 ZNF251Q9BRH9 671 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 GGACTQ9BVM4 153 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 WDR61Q9GZS3 305 aaKnown RBP4.76□□□□□ -1.65
VPS39-209ENST00000568029 IFI27L2Q9H2X8 130 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 ENY2Q9NPA8 101 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 SMCO4Q9NRQ5 59 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 SLC39A9Q9NUM3 307 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 FKBP11Q9NYL4 201 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 KAAG1Q9UBP8 84 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 ARID1AO14497 2285 aa4.76□□□□□ -1.65
VPS39-209ENST00000568029 IGHV1-69-2A0A0G2JMI3 117 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 H7C2Y5 167 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 M0R036 132 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 TNFRSF13BO14836 293 aaPredicted RBP4.75□□□□□ -1.65
VPS39-209ENST00000568029 NUPL2O15504 423 aaKnown RBP4.75□□□□□ -1.65
VPS39-209ENST00000568029 CYB5BO43169 146 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 CD5LO43866 347 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 FSTL3O95633 263 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 IFNA10P01566 189 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 IGHV3-7P01780 117 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 APOA2P02652 100 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 HSPB1P04792 205 aaKnown RBP4.75□□□□□ -1.65
VPS39-209ENST00000568029 OR9G9P0C7N8 305 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 FGF7P21781 194 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 IL3RAP26951 378 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 TAGLN2P37802 199 aaKnown RBP4.75□□□□□ -1.65
VPS39-209ENST00000568029 HSPE1P61604 102 aaKnown RBP4.75□□□□□ -1.65
VPS39-209ENST00000568029 RUNX1Q01196 453 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 DEFA6Q01524 100 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 POU2AF1Q16633 256 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 ZNF506Q5JVG8 444 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 SPSB3Q6PJ21 355 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 HEPN1Q6WQI6 88 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 RBMS3Q6XE24 437 aaKnown RBP4.75□□□□□ -1.65
VPS39-209ENST00000568029 SSX9Q7RTT3 188 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 HAPLN4Q86UW8 402 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 ZNF429Q86V71 674 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms