RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 SRSF6Q13247 344 aaKnown RBP9.33□□□□□ -0.92
CUX1-218ENST00000560541 MUC21Q5SSG8 566 aa9.33□□□□□ -0.92
CUX1-218ENST00000560541 INO80CQ6PI98 192 aaPredicted RBP9.33□□□□□ -0.92
CUX1-218ENST00000560541 Q6ZT83 130 aa9.33□□□□□ -0.92
CUX1-218ENST00000560541 KLHDC1Q8N7A1 406 aa9.33□□□□□ -0.92
CUX1-218ENST00000560541 GGTLC1Q9BX51 225 aa9.33□□□□□ -0.92
CUX1-218ENST00000560541 HINT2Q9BX68 163 aa9.33□□□□□ -0.92
CUX1-218ENST00000560541 KCNIP2Q9NS61 270 aa9.33□□□□□ -0.92
CUX1-218ENST00000560541 TBL2Q9Y4P3 447 aaKnown RBP9.33□□□□□ -0.92
CUX1-218ENST00000560541 NTF3P20783 257 aa9.33□□□□□ -0.92
CUX1-218ENST00000560541 RPL24P83731 157 aaKnown RBP9.33□□□□□ -0.92
CUX1-218ENST00000560541 SPRNQ5BIV9 151 aa9.33□□□□□ -0.92
CUX1-218ENST00000560541 C1orf229Q6ZS94 237 aaPredicted RBP9.33□□□□□ -0.92
CUX1-218ENST00000560541 WDR31Q8NA23 367 aa9.33□□□□□ -0.92
CUX1-218ENST00000560541 OCC1Q8TAD7 63 aa9.33□□□□□ -0.92
CUX1-218ENST00000560541 CHRDL1Q9BU40 450 aa9.33□□□□□ -0.92
CUX1-218ENST00000560541 YTHDF2Q9Y5A9 579 aaKnown RBP9.33□□□□□ -0.92
CUX1-218ENST00000560541 FOXH1O75593 365 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 KITLGP21583 273 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 HES3Q5TGS1 186 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 TMEM140Q9NV12 185 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 MRPS16Q9Y3D3 137 aaKnown RBP9.32□□□□□ -0.92
CUX1-218ENST00000560541 IGHV2-26A0A0B4J1V2 119 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 GAGE10A6NGK3 116 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 GFRA3O60609 400 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 ACTL6BO94805 426 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 IGKV3-15P01624 115 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 FRMD6-AS1P0C7T7 363 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 CD59P13987 128 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 LCN2P80188 198 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 HLA-DRB5Q30154 266 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 FAM201AQ5SY85 155 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 SMPXQ9UHP9 88 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 ARFGEF3Q5TH69 2177 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 IGKV1D-17A0A075B6S4 117 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 TMPRSS2O15393 492 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 CCL11P51671 97 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 ERVK-16P61578 105 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 HERV-K104P63124 156 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 LRRC10Q5BKY1 277 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 ZNF788Q6ZQV5 615 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 FAM19A2Q8N3H0 131 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 C9orf106Q8NAJ2 232 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 TMEM178AQ8NBL3 297 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 PRR7Q8TB68 274 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 CLCF1Q9UBD9 225 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 MGAQ8IWI9 3026 aa9.32□□□□□ -0.92
CUX1-218ENST00000560541 C19orf67A6NJJ6 358 aa9.31□□□□□ -0.92
CUX1-218ENST00000560541 ADH4P08319 380 aa9.31□□□□□ -0.92
CUX1-218ENST00000560541 STAG3L2P0CL84 134 aa9.31□□□□□ -0.92
CUX1-218ENST00000560541 KIR2DL2P43627 348 aaPredicted RBP9.31□□□□□ -0.92
CUX1-218ENST00000560541 RPL31P62899 125 aaKnown RBP9.31□□□□□ -0.92
CUX1-218ENST00000560541 FAM71F2Q6NXP2 309 aa9.31□□□□□ -0.92
CUX1-218ENST00000560541 NEUROG1Q92886 237 aa9.31□□□□□ -0.92
CUX1-218ENST00000560541 S1PR3Q99500 378 aa9.31□□□□□ -0.92
CUX1-218ENST00000560541 DPRXA6NFQ7 191 aa9.31□□□□□ -0.92
CUX1-218ENST00000560541 SPINK4O60575 86 aa9.31□□□□□ -0.92
CUX1-218ENST00000560541 GATA2P23769 480 aaPredicted RBP9.31□□□□□ -0.92
CUX1-218ENST00000560541 OPRK1P41145 380 aa9.31□□□□□ -0.92
CUX1-218ENST00000560541 VDAC2P45880 294 aaPredicted RBP9.31□□□□□ -0.92
CUX1-218ENST00000560541 ZNF90Q03938 601 aa9.31□□□□□ -0.92
CUX1-218ENST00000560541 ZNF718Q3SXZ3 478 aa9.31□□□□□ -0.92
CUX1-218ENST00000560541 C1orf159Q96HA4 380 aa9.31□□□□□ -0.92
CUX1-218ENST00000560541 GUCD1Q96NT3 240 aa9.31□□□□□ -0.92
CUX1-218ENST00000560541 SIGMAR1Q99720 223 aa9.31□□□□□ -0.92
CUX1-218ENST00000560541 TCF19Q9Y242 345 aa9.31□□□□□ -0.92
CUX1-218ENST00000560541 CACNA1HO95180 2353 aa9.31□□□□□ -0.92
CUX1-218ENST00000560541 TIMP3P35625 211 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 RPS20P60866 119 aaKnown RBP9.3□□□□□ -0.92
CUX1-218ENST00000560541 MSMPQ1L6U9 139 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 ZNF841Q6ZN19 808 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 OR10G8Q8NGN5 311 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 CACNG8Q8WXS5 425 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 RAB1CQ92928 201 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 K7EN84 100 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 CXorf1O96002 111 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 GATA3P23771 443 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 HTD2P86397 168 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 RAB31Q13636 194 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 STPG3Q8N7X2 389 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 IFI27L2Q9H2X8 130 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 PRSS46E5RG02 174 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 K7EQM0 130 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 CDX4O14627 284 aaPredicted RBP9.3□□□□□ -0.92
CUX1-218ENST00000560541 NKX2-8O15522 239 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 C3orf79P0CE67 100 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 FOXL1Q12952 345 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 EFNB3Q15768 340 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 DUX4L9Q6RFH8 374 aaPredicted RBP9.3□□□□□ -0.92
CUX1-218ENST00000560541 MOB3BQ86TA1 216 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 OR4F17Q8NGA8 305 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 OR4P4Q8NGL7 312 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 MRPL27Q9P0M9 148 aaKnown RBP9.3□□□□□ -0.92
CUX1-218ENST00000560541 DMXL1Q9Y485 3027 aa9.3□□□□□ -0.92
CUX1-218ENST00000560541 DMXL2Q8TDJ6 3036 aa9.29□□□□□ -0.92
CUX1-218ENST00000560541 IGHV1-18A0A0C4DH31 117 aa9.29□□□□□ -0.92
CUX1-218ENST00000560541 IGLC1P0CG04 106 aa9.29□□□□□ -0.92
CUX1-218ENST00000560541 GCHFRP30047 84 aa9.29□□□□□ -0.92
CUX1-218ENST00000560541 Q56UQ5 140 aa9.29□□□□□ -0.92
CUX1-218ENST00000560541 CDC42EP3Q9UKI2 254 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms