RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 CHST6Q9GZX3 395 aa3.1□□□□□ -1.91
SCFD1-208ENST00000553278 RNF122Q9H9V4 155 aa3.1□□□□□ -1.91
SCFD1-208ENST00000553278 PSORS1C2Q9UIG4 136 aa3.1□□□□□ -1.91
SCFD1-208ENST00000553278 TONSLQ96HA7 1378 aa3.1□□□□□ -1.91
SCFD1-208ENST00000553278 PLXNB1O43157 2135 aa3.1□□□□□ -1.91
SCFD1-208ENST00000553278 IGLV10-54A0A075B6I4 117 aa3.09□□□□□ -1.91
SCFD1-208ENST00000553278 TRAPPC2LH3BP13 241 aa3.09□□□□□ -1.91
SCFD1-208ENST00000553278 BUB1B-PAK6H3BSN5 160 aa3.09□□□□□ -1.91
SCFD1-208ENST00000553278 PFDN1O60925 122 aa3.09□□□□□ -1.91
SCFD1-208ENST00000553278 CBR1P16152 277 aa3.09□□□□□ -1.91
SCFD1-208ENST00000553278 RPS4Y1P22090 263 aaKnown RBP3.09□□□□□ -1.91
SCFD1-208ENST00000553278 NFYAP23511 347 aaPredicted RBP3.09□□□□□ -1.91
SCFD1-208ENST00000553278 ZNF80P51504 273 aaPredicted RBP3.09□□□□□ -1.91
SCFD1-208ENST00000553278 CDC42P60953 191 aa3.09□□□□□ -1.91
SCFD1-208ENST00000553278 LCA10Q71F78 164 aa3.09□□□□□ -1.91
SCFD1-208ENST00000553278 TRAPPC6BQ86SZ2 158 aa3.09□□□□□ -1.91
SCFD1-208ENST00000553278 DYNAPQ8N1N2 210 aa3.09□□□□□ -1.91
SCFD1-208ENST00000553278 OR51T1Q8NGJ9 327 aa3.09□□□□□ -1.91
SCFD1-208ENST00000553278 PYDC1Q8WXC3 89 aa3.09□□□□□ -1.91
SCFD1-208ENST00000553278 MALSU1Q96EH3 234 aa3.09□□□□□ -1.91
SCFD1-208ENST00000553278 LYSMD1Q96S90 227 aa3.09□□□□□ -1.91
SCFD1-208ENST00000553278 HHLA3Q9XRX5 114 aa3.09□□□□□ -1.91
SCFD1-208ENST00000553278 ERGIC3Q9Y282 383 aa3.09□□□□□ -1.91
SCFD1-208ENST00000553278 APOA2P02652 100 aa3.08□□□□□ -1.92
SCFD1-208ENST00000553278 GABRA4P48169 554 aa3.08□□□□□ -1.92
SCFD1-208ENST00000553278 EVX1P49640 407 aa3.08□□□□□ -1.92
SCFD1-208ENST00000553278 YPEL3P61236 119 aaPredicted RBP3.08□□□□□ -1.92
SCFD1-208ENST00000553278 AGTRAPQ6RW13 159 aa3.08□□□□□ -1.92
SCFD1-208ENST00000553278 BPIFA4PQ86YQ2 179 aa3.08□□□□□ -1.92
SCFD1-208ENST00000553278 LYPD1Q8N2G4 141 aa3.08□□□□□ -1.92
SCFD1-208ENST00000553278 RPP25LQ8N5L8 163 aaKnown RBP3.08□□□□□ -1.92
SCFD1-208ENST00000553278 FAM24BQ8N5W8 94 aa3.08□□□□□ -1.92
SCFD1-208ENST00000553278 MRPS24Q96EL2 167 aaKnown RBP3.08□□□□□ -1.92
SCFD1-208ENST00000553278 SCGB3A1Q96QR1 104 aa3.08□□□□□ -1.92
SCFD1-208ENST00000553278 PBOV1Q9GZY1 135 aa3.08□□□□□ -1.92
SCFD1-208ENST00000553278 C19orf12Q9NSK7 152 aa3.08□□□□□ -1.92
SCFD1-208ENST00000553278 AMMECR1Q9Y4X0 333 aaPredicted RBP3.08□□□□□ -1.92
SCFD1-208ENST00000553278 SHROOM3Q8TF72 1996 aa3.07□□□□□ -1.92
SCFD1-208ENST00000553278 TRAV7A0A075B6U4 112 aa3.07□□□□□ -1.92
SCFD1-208ENST00000553278 ODF3BA8MYP8 253 aa3.07□□□□□ -1.92
SCFD1-208ENST00000553278 CYB5BO43169 146 aa3.07□□□□□ -1.92
SCFD1-208ENST00000553278 ZNF73O43830 326 aaPredicted RBP3.07□□□□□ -1.92
SCFD1-208ENST00000553278 BANF1O75531 89 aa3.07□□□□□ -1.92
SCFD1-208ENST00000553278 IGKV1-17P01599 117 aa3.07□□□□□ -1.92
SCFD1-208ENST00000553278 EIF2B2P49770 351 aaKnown RBP3.07□□□□□ -1.92
SCFD1-208ENST00000553278 FOXF1Q12946 379 aa3.07□□□□□ -1.92
SCFD1-208ENST00000553278 MIR17HGQ75NE6 70 aa3.07□□□□□ -1.92
SCFD1-208ENST00000553278 TCF24Q7RTU0 167 aa3.07□□□□□ -1.92
SCFD1-208ENST00000553278 LINC00304Q8N9R0 145 aa3.07□□□□□ -1.92
SCFD1-208ENST00000553278 TERB2Q8NHR7 220 aa3.07□□□□□ -1.92
SCFD1-208ENST00000553278 SERPINI1Q99574 410 aa3.07□□□□□ -1.92
SCFD1-208ENST00000553278 TUBA4BQ9H853 241 aa3.07□□□□□ -1.92
SCFD1-208ENST00000553278 NACADO15069 1562 aa3.07□□□□□ -1.92
SCFD1-208ENST00000553278 IGKV1D-17A0A075B6S4 117 aa3.06□□□□□ -1.92
SCFD1-208ENST00000553278 MAP1LC3B2A6NCE7 125 aa3.06□□□□□ -1.92
SCFD1-208ENST00000553278 RIIAD1A6NNX1 92 aa3.06□□□□□ -1.92
SCFD1-208ENST00000553278 C1orf196B1AJZ1 125 aa3.06□□□□□ -1.92
SCFD1-208ENST00000553278 TSTD3H0UI37 97 aa3.06□□□□□ -1.92
SCFD1-208ENST00000553278 H7C2G1 150 aa3.06□□□□□ -1.92
SCFD1-208ENST00000553278 C19orf84I3L1E1 186 aa3.06□□□□□ -1.92
SCFD1-208ENST00000553278 COL1A2P08123 1366 aa3.06□□□□□ -1.92
SCFD1-208ENST00000553278 GLRXP35754 106 aa3.06□□□□□ -1.92
SCFD1-208ENST00000553278 DCUN1D2Q6PH85 259 aa3.06□□□□□ -1.92
SCFD1-208ENST00000553278 CLVS1Q8IUQ0 354 aaPredicted RBP3.06□□□□□ -1.92
SCFD1-208ENST00000553278 OR10K1Q8NGX5 313 aa3.06□□□□□ -1.92
SCFD1-208ENST00000553278 GINS4Q9BRT9 223 aa3.06□□□□□ -1.92
SCFD1-208ENST00000553278 MAP1LC3BQ9GZQ8 125 aa3.06□□□□□ -1.92
SCFD1-208ENST00000553278 NDUFAF1Q9Y375 327 aa3.06□□□□□ -1.92
SCFD1-208ENST00000553278 MYH3P11055 1940 aa3.05□□□□□ -1.92
SCFD1-208ENST00000553278 PTPRSQ13332 1948 aa3.05□□□□□ -1.92
SCFD1-208ENST00000553278 SLX4Q8IY92 1834 aa3.05□□□□□ -1.92
SCFD1-208ENST00000553278 SPRR5A0A1B0GTR4 108 aa3.05□□□□□ -1.92
SCFD1-208ENST00000553278 E7EQL1 145 aa3.05□□□□□ -1.92
SCFD1-208ENST00000553278 PPBPP02775 128 aa3.05□□□□□ -1.92
SCFD1-208ENST00000553278 SRIP30626 198 aa3.05□□□□□ -1.92
SCFD1-208ENST00000553278 KTN1-AS1Q86SY8 53 aa3.05□□□□□ -1.92
SCFD1-208ENST00000553278 HIST3H2BBQ8N257 126 aa3.05□□□□□ -1.92
SCFD1-208ENST00000553278 EXOC3-AS1Q8N2X6 119 aa3.05□□□□□ -1.92
SCFD1-208ENST00000553278 NDUFB11Q9NX14 153 aa3.05□□□□□ -1.92
SCFD1-208ENST00000553278 MYH2Q9UKX2 1941 aa3.05□□□□□ -1.92
SCFD1-208ENST00000553278 PLXND1Q9Y4D7 1925 aa3.05□□□□□ -1.92
SCFD1-208ENST00000553278 MYH11P35749 1972 aa3.04□□□□□ -1.92
SCFD1-208ENST00000553278 SCN9AQ15858 1988 aa3.04□□□□□ -1.92
SCFD1-208ENST00000553278 IGHV3-64A0A075B6Q5 118 aa3.04□□□□□ -1.92
SCFD1-208ENST00000553278 DUXBA0A1W2PPF3 345 aa3.04□□□□□ -1.92
SCFD1-208ENST00000553278 ORC5O43913 435 aa3.04□□□□□ -1.92
SCFD1-208ENST00000553278 HINT1P49773 126 aaPredicted RBP3.04□□□□□ -1.92
SCFD1-208ENST00000553278 ZNF90Q03938 601 aa3.04□□□□□ -1.92
SCFD1-208ENST00000553278 KISS1Q15726 138 aa3.04□□□□□ -1.92
SCFD1-208ENST00000553278 RRN3P1Q2M238 152 aa3.04□□□□□ -1.92
SCFD1-208ENST00000553278 LINC01554Q52M75 96 aa3.04□□□□□ -1.92
SCFD1-208ENST00000553278 TMEM78Q5T7P6 136 aa3.04□□□□□ -1.92
SCFD1-208ENST00000553278 PHF13Q86YI8 300 aaPredicted RBP3.04□□□□□ -1.92
SCFD1-208ENST00000553278 C10orf126Q8N4M7 172 aa3.04□□□□□ -1.92
SCFD1-208ENST00000553278 DYDC1Q8WWB3 177 aa3.04□□□□□ -1.92
SCFD1-208ENST00000553278 C11orf40Q8WZ69 217 aa3.04□□□□□ -1.92
SCFD1-208ENST00000553278 TMEM106AQ96A25 262 aa3.04□□□□□ -1.92
SCFD1-208ENST00000553278 OSTCQ9NRP0 149 aa3.04□□□□□ -1.92
SCFD1-208ENST00000553278 ZNF106Q9H2Y7 1883 aaKnown RBP3.04□□□□□ -1.92
SCFD1-208ENST00000553278 TOPBP1Q92547 1522 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms