RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 OPN1MW2P0DN77 364 aa11.53□□□□□ -0.56
VPS33A-209ENST00000544349 OPN1MW3P0DN78 364 aa11.53□□□□□ -0.56
VPS33A-209ENST00000544349 CDX1P47902 265 aaPredicted RBP11.53□□□□□ -0.56
VPS33A-209ENST00000544349 CTAG1AP78358 180 aa11.53□□□□□ -0.56
VPS33A-209ENST00000544349 LCN2P80188 198 aa11.53□□□□□ -0.56
VPS33A-209ENST00000544349 PDZD11Q5EBL8 140 aa11.53□□□□□ -0.56
VPS33A-209ENST00000544349 HCP5Q6MZN7 132 aa11.53□□□□□ -0.56
VPS33A-209ENST00000544349 SSMEM1Q8WWF3 244 aa11.53□□□□□ -0.56
VPS33A-209ENST00000544349 INSIG2Q9Y5U4 225 aa11.53□□□□□ -0.56
VPS33A-209ENST00000544349 PXMP4Q9Y6I8 212 aa11.53□□□□□ -0.56
VPS33A-209ENST00000544349 FASNP49327 2511 aaKnown RBP11.53□□□□□ -0.56
VPS33A-209ENST00000544349 LINC00587B1AMM8 73 aa11.52□□□□□ -0.57
VPS33A-209ENST00000544349 ARL14EPLP0DKL9 152 aa11.52□□□□□ -0.57
VPS33A-209ENST00000544349 OPRK1P41145 380 aa11.52□□□□□ -0.57
VPS33A-209ENST00000544349 GNB1P62873 340 aa11.52□□□□□ -0.57
VPS33A-209ENST00000544349 S100A12P80511 92 aa11.52□□□□□ -0.57
VPS33A-209ENST00000544349 CDPF1Q6NVV7 123 aa11.52□□□□□ -0.57
VPS33A-209ENST00000544349 FAM168AQ92567 244 aa11.52□□□□□ -0.57
VPS33A-209ENST00000544349 RPEQ96AT9 228 aa11.52□□□□□ -0.57
VPS33A-209ENST00000544349 GSN-AS1Q9NRJ2 163 aa11.52□□□□□ -0.57
VPS33A-209ENST00000544349 ZNF257Q9Y2Q1 563 aa11.52□□□□□ -0.57
VPS33A-209ENST00000544349 OR51B2Q9Y5P1 312 aa11.52□□□□□ -0.57
VPS33A-209ENST00000544349 IGHV3-72A0A0B4J1Y9 119 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 IGHV2-70DA0A0C4DH43 119 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 IGLV2-23P01705 113 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 PFN1P07737 140 aaKnown RBP11.51□□□□□ -0.57
VPS33A-209ENST00000544349 ATP5J2P56134 94 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 KLRD1Q13241 179 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 CLEC12BQ2HXU8 276 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 SPATA31B1PQ5VZV4 182 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 SLC24A4Q8NFF2 622 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 PIMREGQ9BSJ6 248 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 FKBP11Q9NYL4 201 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 LSM4Q9Y4Z0 139 aaKnown RBP11.51□□□□□ -0.57
VPS33A-209ENST00000544349 CA2P00918 260 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 FABP1P07148 127 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 NPY1RP25929 384 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 HTR1DP28221 377 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 RPP30P78346 268 aaKnown RBP11.51□□□□□ -0.57
VPS33A-209ENST00000544349 LDLRAD2Q5SZI1 272 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 VMO1Q7Z5L0 202 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 MOB3BQ86TA1 216 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 VSTM2AQ8TAG5 236 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 C10orf105Q8TEF2 133 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 RITA1Q96K30 269 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 GPR61Q9BZJ8 451 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 AURKAIP1Q9NWT8 199 aaPredicted RBP11.51□□□□□ -0.57
VPS33A-209ENST00000544349 FLNCQ14315 2725 aa11.51□□□□□ -0.57
VPS33A-209ENST00000544349 PGPEP1LA6NFU8 196 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 ODF3BA8MYP8 253 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 H7BYZ3 331 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 NDUFS8O00217 210 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 MPDU1O75352 247 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 LGALS7P47929 136 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 B2MP61769 119 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 PYY3Q5JQD4 70 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 HIST3H2BBQ8N257 126 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 ZNF114Q8NC26 417 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 OR5T1Q8NG75 326 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 OR4A5Q8NH83 315 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 TMEM167AQ8TBQ9 72 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 GGACTQ9BVM4 153 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 HINT2Q9BX68 163 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 SIRPDQ9H106 197 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 DPM3Q9P2X0 92 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 NAV3Q8IVL0 2385 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 COL12A1Q99715 3063 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 TEX50A0A1B0GTY4 177 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 VWC2LB2RUY7 222 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 FOXH1O75593 365 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 USF1P22415 310 aaPredicted RBP11.5□□□□□ -0.57
VPS33A-209ENST00000544349 GALR1P47211 349 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 TPTE2P1Q5T6R2 138 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 CST9LP1Q5W188 147 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 NRGNQ92686 78 aa11.5□□□□□ -0.57
VPS33A-209ENST00000544349 A0A1W2PPI3 338 aa11.49□□□□□ -0.57
VPS33A-209ENST00000544349 A0A1W2PPV4 95 aa11.49□□□□□ -0.57
VPS33A-209ENST00000544349 STAG3L2P0CL84 134 aa11.49□□□□□ -0.57
VPS33A-209ENST00000544349 STAG3L3P0CL85 134 aa11.49□□□□□ -0.57
VPS33A-209ENST00000544349 RPL8P62917 257 aaKnown RBP11.49□□□□□ -0.57
VPS33A-209ENST00000544349 PRCDQ00LT1 54 aa11.49□□□□□ -0.57
VPS33A-209ENST00000544349 VMA21Q3ZAQ7 101 aa11.49□□□□□ -0.57
VPS33A-209ENST00000544349 CLEC2AQ6UVW9 174 aa11.49□□□□□ -0.57
VPS33A-209ENST00000544349 STPG3Q8N7X2 389 aa11.49□□□□□ -0.57
VPS33A-209ENST00000544349 OR5B3Q8NH48 314 aa11.49□□□□□ -0.57
VPS33A-209ENST00000544349 OR4X1Q8NH49 305 aa11.49□□□□□ -0.57
VPS33A-209ENST00000544349 PYGO2Q9BRQ0 406 aa11.49□□□□□ -0.57
VPS33A-209ENST00000544349 ENY2Q9NPA8 101 aa11.49□□□□□ -0.57
VPS33A-209ENST00000544349 HOXB4P17483 251 aaPredicted RBP11.48□□□□□ -0.57
VPS33A-209ENST00000544349 TRBV20OR9-2A0A075B6H5 130 aa11.48□□□□□ -0.57
VPS33A-209ENST00000544349 A0A1W2PPQ1 181 aa11.48□□□□□ -0.57
VPS33A-209ENST00000544349 SOX15O60248 233 aa11.48□□□□□ -0.57
VPS33A-209ENST00000544349 NDUFB4O95168 129 aa11.48□□□□□ -0.57
VPS33A-209ENST00000544349 CEACAM3P40198 252 aa11.48□□□□□ -0.57
VPS33A-209ENST00000544349 TMEM249Q2WGJ8 235 aa11.48□□□□□ -0.57
VPS33A-209ENST00000544349 LHFPL4Q7Z7J7 247 aa11.48□□□□□ -0.57
VPS33A-209ENST00000544349 LINC01551Q86U37 167 aa11.48□□□□□ -0.57
VPS33A-209ENST00000544349 PERPQ96FX8 193 aa11.48□□□□□ -0.57
VPS33A-209ENST00000544349 PLEKHA3Q9HB20 300 aa11.48□□□□□ -0.57
VPS33A-209ENST00000544349 SEPSECSQ9HD40 501 aaKnown RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms