RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 ZNF343Q6P1L6 599 aa5.37□□□□□ -1.55
USP28-206ENST00000538224 C16orf82Q7Z2V1 217 aa5.37□□□□□ -1.55
USP28-206ENST00000538224 KIR3DL3Q8N743 410 aa5.37□□□□□ -1.55
USP28-206ENST00000538224 THAP8Q8NA92 274 aa5.37□□□□□ -1.55
USP28-206ENST00000538224 STXBP6Q8NFX7 210 aa5.37□□□□□ -1.55
USP28-206ENST00000538224 LINC01560Q8TB33 94 aa5.37□□□□□ -1.55
USP28-206ENST00000538224 ABHD5Q8WTS1 349 aa5.37□□□□□ -1.55
USP28-206ENST00000538224 RPEQ96AT9 228 aa5.37□□□□□ -1.55
USP28-206ENST00000538224 PYGO2Q9BRQ0 406 aa5.37□□□□□ -1.55
USP28-206ENST00000538224 DMRT1Q9Y5R6 373 aa5.37□□□□□ -1.55
USP28-206ENST00000538224 INSIG2Q9Y5U4 225 aa5.37□□□□□ -1.55
USP28-206ENST00000538224 URGCP-MRPS24S4R325 110 aa5.37□□□□□ -1.55
USP28-206ENST00000538224 ICE1Q9Y2F5 2266 aa5.37□□□□□ -1.55
USP28-206ENST00000538224 ANKHD1Q8IWZ3 2542 aaKnown RBP5.37□□□□□ -1.55
USP28-206ENST00000538224 ATMQ13315 3056 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 IGHV1-3A0A0C4DH29 117 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 TCRBV4S1A1TA0A5B7 111 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 BUB1B-PAK6H3BSN5 160 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 ENSAO43768 121 aaKnown RBP5.36□□□□□ -1.55
USP28-206ENST00000538224 SLC25A17O43808 307 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 COX7A2P2O60397 106 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 PLAUP00749 431 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 TYMSP04818 313 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 CXCL1P09341 107 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 C8orf88P0DMB2 117 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 RAB4AP20338 218 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 S100A2P29034 98 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 OR10J1P30954 320 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 ATP5G3P48201 142 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 UBE2G2P60604 165 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 GNB1P62873 340 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 PRSS8Q16651 343 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 LBHQ53QV2 105 aaPredicted RBP5.36□□□□□ -1.55
USP28-206ENST00000538224 PVRIGQ6DKI7 326 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 C11orf71Q6IPW1 123 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 ZNF841Q6ZN19 808 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 LINC01551Q86U37 167 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 DTX2Q86UW9 622 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 LY6G5BQ8NDX9 201 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 OR51G1Q8NGK1 321 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 OR1L6Q8NGR2 347 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 C1orf159Q96HA4 380 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 GSN-AS1Q9NRJ2 163 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 ZNRD1Q9P1U0 126 aa5.36□□□□□ -1.55
USP28-206ENST00000538224 MAP1BP46821 2468 aaKnown RBP5.36□□□□□ -1.55
USP28-206ENST00000538224 PTPRZ1P23471 2315 aaPredicted RBP5.35□□□□□ -1.55
USP28-206ENST00000538224 POLEQ07864 2286 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 SCO2A0A1W2PP80 73 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 A0A1W2PRE2 83 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 OOSP1A8MZH6 123 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 SIAH2O43255 324 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 OR7C2O60412 319 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 GGCTO75223 188 aaKnown RBP5.35□□□□□ -1.55
USP28-206ENST00000538224 EIF3GO75821 320 aaKnown RBP eCLIP5.35□□□□□ -1.55
USP28-206ENST00000538224 NDUFB4O95168 129 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 GOSR1O95249 250 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 PFN1P07737 140 aaKnown RBP5.35□□□□□ -1.55
USP28-206ENST00000538224 C1QTNF9P0C862 333 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 DEFA4P12838 97 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 MYOD1P15172 320 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 HOXA5P20719 270 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 COL8A2P25067 703 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 CDX1P47902 265 aaPredicted RBP5.35□□□□□ -1.55
USP28-206ENST00000538224 WT1-ASQ06250 92 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 FOXL1Q12952 345 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 PSG5Q15238 335 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 CCDC144NLQ6NUI1 221 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 MOB3BQ86TA1 216 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 C11orf42Q8N5U0 333 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 OR11H6Q8NGC7 330 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 OR10W1Q8NGF6 305 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 OR2T10Q8NGZ9 312 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 OR1P1Q8NH06 330 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 PERPQ96FX8 193 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 ACY3Q96HD9 319 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 SFRP2Q96HF1 295 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 SEPSECSQ9HD40 501 aaKnown RBP5.35□□□□□ -1.55
USP28-206ENST00000538224 DNAJC4Q9NNZ3 241 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 ONECUT1Q9UBC0 465 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 SIGLEC9Q9Y336 463 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 PCNX1Q96RV3 2341 aa5.35□□□□□ -1.55
USP28-206ENST00000538224 IGKV1OR2-108A0A075B7D4 117 aa5.34□□□□□ -1.55
USP28-206ENST00000538224 A0A1W2PPI3 338 aa5.34□□□□□ -1.55
USP28-206ENST00000538224 A0A1W2PPQ1 181 aa5.34□□□□□ -1.55
USP28-206ENST00000538224 IGLC7A0M8Q6 106 aa5.34□□□□□ -1.55
USP28-206ENST00000538224 HIST1H2BKO60814 126 aa5.34□□□□□ -1.55
USP28-206ENST00000538224 TRGC2P03986 189 aa5.34□□□□□ -1.55
USP28-206ENST00000538224 HIST1H2BJP06899 126 aa5.34□□□□□ -1.55
USP28-206ENST00000538224 CRYGBP07316 175 aa5.34□□□□□ -1.55
USP28-206ENST00000538224 HIST1H2BOP23527 126 aa5.34□□□□□ -1.55
USP28-206ENST00000538224 COX7A1P24310 79 aa5.34□□□□□ -1.55
USP28-206ENST00000538224 HTR1DP28221 377 aa5.34□□□□□ -1.55
USP28-206ENST00000538224 GRNP28799 593 aaKnown RBP5.34□□□□□ -1.55
USP28-206ENST00000538224 HIST1H2BBP33778 126 aa5.34□□□□□ -1.55
USP28-206ENST00000538224 GPR6P46095 362 aaPredicted RBP5.34□□□□□ -1.55
USP28-206ENST00000538224 HIST1H2BDP58876 126 aa5.34□□□□□ -1.55
USP28-206ENST00000538224 HIST1H2BCP62807 126 aa5.34□□□□□ -1.55
USP28-206ENST00000538224 UBE2L3P68036 154 aaKnown RBP5.34□□□□□ -1.55
USP28-206ENST00000538224 COTL1Q14019 142 aa5.34□□□□□ -1.55
USP28-206ENST00000538224 TNXAQ16473 311 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms