RNA–Protein interactions for RNA: ENST00000522987.1

MRPS28-209, Transcript of mitochondrial ribosomal protein S28, humanhuman

TSL 3

Gene MRPS28, Length 487 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28-209ENST00000522987 CMTM3Q96MX0 182 aa11.32□□□□□ -0.6
MRPS28-209ENST00000522987 NXF2Q9GZY0 626 aaKnown RBP11.32□□□□□ -0.6
MRPS28-209ENST00000522987 FKBP11Q9NYL4 201 aa11.32□□□□□ -0.6
MRPS28-209ENST00000522987 M0QYG6 137 aa11.31□□□□□ -0.6
MRPS28-209ENST00000522987 ST8SIA3O43173 380 aa11.31□□□□□ -0.6
MRPS28-209ENST00000522987 CA1P00915 261 aaPredicted RBP11.31□□□□□ -0.6
MRPS28-209ENST00000522987 PI3P19957 117 aa11.31□□□□□ -0.6
MRPS28-209ENST00000522987 RPL11P62913 178 aaKnown RBP11.31□□□□□ -0.6
MRPS28-209ENST00000522987 TOMM20LQ6UXN7 152 aa11.31□□□□□ -0.6
MRPS28-209ENST00000522987 TSC22D3Q99576 134 aa11.31□□□□□ -0.6
MRPS28-209ENST00000522987 COMMD3Q9UBI1 195 aa11.31□□□□□ -0.6
MRPS28-209ENST00000522987 DNASE2O00115 360 aaPredicted RBP11.3□□□□□ -0.6
MRPS28-209ENST00000522987 DFFBO76075 338 aa11.3□□□□□ -0.6
MRPS28-209ENST00000522987 DEFB131AP59861 70 aa11.3□□□□□ -0.6
MRPS28-209ENST00000522987 PRCDQ00LT1 54 aa11.3□□□□□ -0.6
MRPS28-209ENST00000522987 RBMS2Q15434 407 aaKnown RBP11.3□□□□□ -0.6
MRPS28-209ENST00000522987 FAM90A2PQ658T7 463 aa11.3□□□□□ -0.6
MRPS28-209ENST00000522987 C11orf45Q8TAV5 145 aa11.3□□□□□ -0.6
MRPS28-209ENST00000522987 OR10C1Q96KK4 312 aa11.3□□□□□ -0.6
MRPS28-209ENST00000522987 ATP6V0BQ99437 205 aa11.3□□□□□ -0.6
MRPS28-209ENST00000522987 S100GP29377 79 aa11.29□□□□□ -0.6
MRPS28-209ENST00000522987 PRR20EP86478 221 aa11.29□□□□□ -0.6
MRPS28-209ENST00000522987 PRR20CP86479 221 aa11.29□□□□□ -0.6
MRPS28-209ENST00000522987 PRR20DP86480 221 aa11.29□□□□□ -0.6
MRPS28-209ENST00000522987 PRR20BP86481 221 aa11.29□□□□□ -0.6
MRPS28-209ENST00000522987 PRR20AP86496 221 aa11.29□□□□□ -0.6
MRPS28-209ENST00000522987 KCTD21Q4G0X4 260 aa11.29□□□□□ -0.6
MRPS28-209ENST00000522987 CROCCP3Q8IVE0 287 aa11.29□□□□□ -0.6
MRPS28-209ENST00000522987 GPX8Q8TED1 209 aa11.29□□□□□ -0.6
MRPS28-209ENST00000522987 YIPF6Q96EC8 236 aa11.29□□□□□ -0.6
MRPS28-209ENST00000522987 MS4A6AQ9H2W1 248 aa11.29□□□□□ -0.6
MRPS28-209ENST00000522987 RABAC1Q9UI14 185 aa11.29□□□□□ -0.6
MRPS28-209ENST00000522987 PUS1Q9Y606 427 aaKnown RBP eCLIP11.29□□□□□ -0.6
MRPS28-209ENST00000522987 PGAM2P15259 253 aa11.28□□□□□ -0.6
MRPS28-209ENST00000522987 ATF4P18848 351 aaPredicted RBP11.28□□□□□ -0.6
MRPS28-209ENST00000522987 HSPE1P61604 102 aaKnown RBP11.28□□□□□ -0.6
MRPS28-209ENST00000522987 NCS1P62166 190 aa11.28□□□□□ -0.6
MRPS28-209ENST00000522987 PAFAH1B2P68402 229 aa11.28□□□□□ -0.6
MRPS28-209ENST00000522987 ERHP84090 104 aaKnown RBP11.28□□□□□ -0.6
MRPS28-209ENST00000522987 GATAD1Q8WUU5 269 aa11.28□□□□□ -0.6
MRPS28-209ENST00000522987 TXN2Q99757 166 aa11.28□□□□□ -0.6
MRPS28-209ENST00000522987 GINS3Q9BRX5 216 aa11.28□□□□□ -0.6
MRPS28-209ENST00000522987 DNAH10Q8IVF4 4471 aa11.27□□□□□ -0.6
MRPS28-209ENST00000522987 A0A1B0GU03 582 aa11.27□□□□□ -0.61
MRPS28-209ENST00000522987 HPGDSO60760 199 aa11.27□□□□□ -0.61
MRPS28-209ENST00000522987 IGKV1-5P01602 117 aa11.27□□□□□ -0.61
MRPS28-209ENST00000522987 IFNA4P05014 189 aa11.27□□□□□ -0.61
MRPS28-209ENST00000522987 PPP5CP53041 499 aa11.27□□□□□ -0.61
MRPS28-209ENST00000522987 MLANAQ16655 118 aa11.27□□□□□ -0.61
MRPS28-209ENST00000522987 LGALS9CQ6DKI2 356 aa11.27□□□□□ -0.61
MRPS28-209ENST00000522987 LPCAT3Q6P1A2 487 aa11.27□□□□□ -0.61
MRPS28-209ENST00000522987 CADM3Q8N126 398 aa11.27□□□□□ -0.61
MRPS28-209ENST00000522987 SLC35G3Q8N808 338 aa11.27□□□□□ -0.61
MRPS28-209ENST00000522987 ZNF114Q8NC26 417 aa11.27□□□□□ -0.61
MRPS28-209ENST00000522987 ZFAND3Q9H8U3 227 aa11.27□□□□□ -0.61
MRPS28-209ENST00000522987 MRPL36Q9P0J6 103 aaKnown RBP11.27□□□□□ -0.61
MRPS28-209ENST00000522987 SMIM31A0A1B0GVY4 71 aa11.26□□□□□ -0.61
MRPS28-209ENST00000522987 IFNA17P01571 189 aa11.26□□□□□ -0.61
MRPS28-209ENST00000522987 ELK1P19419 428 aa11.26□□□□□ -0.61
MRPS28-209ENST00000522987 RCVRNP35243 200 aa11.26□□□□□ -0.61
MRPS28-209ENST00000522987 SNCAP37840 140 aa11.26□□□□□ -0.61
MRPS28-209ENST00000522987 ETV6P41212 452 aa11.26□□□□□ -0.61
MRPS28-209ENST00000522987 AKR1C2P52895 323 aa11.26□□□□□ -0.61
MRPS28-209ENST00000522987 CMC4P56277 68 aaPredicted RBP11.26□□□□□ -0.61
MRPS28-209ENST00000522987 VBP1P61758 197 aa11.26□□□□□ -0.61
MRPS28-209ENST00000522987 TMEM187Q14656 261 aa11.26□□□□□ -0.61
MRPS28-209ENST00000522987 ZNF600Q6ZNG1 722 aa11.26□□□□□ -0.61
MRPS28-209ENST00000522987 DUSP18Q8NEJ0 188 aa11.26□□□□□ -0.61
MRPS28-209ENST00000522987 STXBP6Q8NFX7 210 aa11.26□□□□□ -0.61
MRPS28-209ENST00000522987 TP53RKQ96S44 253 aa11.26□□□□□ -0.61
MRPS28-209ENST00000522987 KNCNA6PVL3 124 aa11.25□□□□□ -0.61
MRPS28-209ENST00000522987 IGLL5B9A064 214 aa11.25□□□□□ -0.61
MRPS28-209ENST00000522987 TMEM127O75204 238 aa11.25□□□□□ -0.61
MRPS28-209ENST00000522987 TMEM50AO95807 157 aa11.25□□□□□ -0.61
MRPS28-209ENST00000522987 NPBWR1P48145 328 aa11.25□□□□□ -0.61
MRPS28-209ENST00000522987 HOXA1P49639 335 aaPredicted RBP11.25□□□□□ -0.61
MRPS28-209ENST00000522987 SP6Q3SY56 376 aa11.25□□□□□ -0.61
MRPS28-209ENST00000522987 STHQ8IWL8 128 aa11.25□□□□□ -0.61
MRPS28-209ENST00000522987 MFFQ9GZY8 342 aa11.25□□□□□ -0.61
MRPS28-209ENST00000522987 C11orf68Q9H3H3 251 aaKnown RBP11.25□□□□□ -0.61
MRPS28-209ENST00000522987 VSIRQ9H7M9 311 aa11.25□□□□□ -0.61
MRPS28-209ENST00000522987 A0A0B4J293 547 aa11.24□□□□□ -0.61
MRPS28-209ENST00000522987 FAM25AB3EWG3 89 aa11.24□□□□□ -0.61
MRPS28-209ENST00000522987 FAM25CB3EWG5 89 aa11.24□□□□□ -0.61
MRPS28-209ENST00000522987 FAM25GB3EWG6 89 aa11.24□□□□□ -0.61
MRPS28-209ENST00000522987 ZNF688P0C7X2 276 aa11.24□□□□□ -0.61
MRPS28-209ENST00000522987 RNASE2P10153 161 aaKnown RBP11.24□□□□□ -0.61
MRPS28-209ENST00000522987 UCP3P55916 312 aa11.24□□□□□ -0.61
MRPS28-209ENST00000522987 PIGPP57054 158 aa11.24□□□□□ -0.61
MRPS28-209ENST00000522987 C2CD4CQ8TF44 421 aa11.24□□□□□ -0.61
MRPS28-209ENST00000522987 FNDC4Q9H6D8 234 aaPredicted RBP11.24□□□□□ -0.61
MRPS28-209ENST00000522987 FAM212BQ9NTI7 297 aaPredicted RBP11.24□□□□□ -0.61
MRPS28-209ENST00000522987 CLEC5AQ9NY25 188 aa11.24□□□□□ -0.61
MRPS28-209ENST00000522987 IGHV4-28A0A0C4DH34 117 aa11.23□□□□□ -0.61
MRPS28-209ENST00000522987 A0A0G2JRQ6 117 aa11.23□□□□□ -0.61
MRPS28-209ENST00000522987 APOA1P02647 267 aa11.23□□□□□ -0.61
MRPS28-209ENST00000522987 RBMY1A1P0DJD3 496 aaKnown RBP11.23□□□□□ -0.61
MRPS28-209ENST00000522987 RBMY1CP0DJD4 496 aa11.23□□□□□ -0.61
MRPS28-209ENST00000522987 RBMY1FQ15415 496 aaKnown RBP11.23□□□□□ -0.61
MRPS28-209ENST00000522987 TRIM16LQ309B1 348 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms