RNA–Protein interactions for RNA: ENST00000515420.1

CLCN3-210, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 735 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-210ENST00000515420 I3L2K1 104 aa9.68□□□□□ -0.86
CLCN3-210ENST00000515420 CORTO00230 105 aa9.68□□□□□ -0.86
CLCN3-210ENST00000515420 NDUFA4O00483 81 aa9.68□□□□□ -0.86
CLCN3-210ENST00000515420 ANXA3P12429 323 aa9.68□□□□□ -0.86
CLCN3-210ENST00000515420 CBLN1P23435 193 aa9.68□□□□□ -0.86
CLCN3-210ENST00000515420 SNCAP37840 140 aa9.68□□□□□ -0.86
CLCN3-210ENST00000515420 SUB1P53999 127 aaKnown RBP eCLIP9.68□□□□□ -0.86
CLCN3-210ENST00000515420 SPCS3P61009 180 aa9.68□□□□□ -0.86
CLCN3-210ENST00000515420 TMEM128Q5BJH2 165 aa9.68□□□□□ -0.86
CLCN3-210ENST00000515420 TMEM268Q5VZI3 342 aa9.68□□□□□ -0.86
CLCN3-210ENST00000515420 PVRIGQ6DKI7 326 aa9.68□□□□□ -0.86
CLCN3-210ENST00000515420 GTSCR1Q86UQ5 136 aa9.68□□□□□ -0.86
CLCN3-210ENST00000515420 DYNLRB2Q8TF09 96 aa9.68□□□□□ -0.86
CLCN3-210ENST00000515420 ENY2Q9NPA8 101 aa9.68□□□□□ -0.86
CLCN3-210ENST00000515420 UFC1Q9Y3C8 167 aa9.68□□□□□ -0.86
CLCN3-210ENST00000515420 A0A0B4J2A0 478 aa9.67□□□□□ -0.86
CLCN3-210ENST00000515420 ZNF320A2RRD8 509 aa9.67□□□□□ -0.86
CLCN3-210ENST00000515420 OR2T8A6NH00 312 aa9.67□□□□□ -0.86
CLCN3-210ENST00000515420 C8orf88P0DMB2 117 aa9.67□□□□□ -0.86
CLCN3-210ENST00000515420 HOXA1P49639 335 aaPredicted RBP9.67□□□□□ -0.86
CLCN3-210ENST00000515420 MFAP4P55083 255 aa9.67□□□□□ -0.86
CLCN3-210ENST00000515420 SUPT4H1P63272 117 aaKnown RBP9.67□□□□□ -0.86
CLCN3-210ENST00000515420 DEFB114Q30KQ6 69 aa9.67□□□□□ -0.86
CLCN3-210ENST00000515420 BSXQ3C1V8 233 aa9.67□□□□□ -0.86
CLCN3-210ENST00000515420 CD300EQ496F6 205 aaPredicted RBP9.67□□□□□ -0.86
CLCN3-210ENST00000515420 Q6ZRM9 215 aa9.67□□□□□ -0.86
CLCN3-210ENST00000515420 Q8N1Y9 231 aa9.67□□□□□ -0.86
CLCN3-210ENST00000515420 TMEM190Q8WZ59 177 aa9.67□□□□□ -0.86
CLCN3-210ENST00000515420 MISP3Q96FF7 219 aa9.67□□□□□ -0.86
CLCN3-210ENST00000515420 DAZ1Q9NQZ3 744 aaKnown RBP9.67□□□□□ -0.86
CLCN3-210ENST00000515420 MRPL27Q9P0M9 148 aaKnown RBP9.67□□□□□ -0.86
CLCN3-210ENST00000515420 SHPKQ9UHJ6 478 aa9.67□□□□□ -0.86
CLCN3-210ENST00000515420 DUXBA0A1W2PPF3 345 aa9.66□□□□□ -0.86
CLCN3-210ENST00000515420 NAP1L6A6NFF2 107 aa9.66□□□□□ -0.86
CLCN3-210ENST00000515420 MT-CO2P00403 227 aa9.66□□□□□ -0.86
CLCN3-210ENST00000515420 AKR1C4P17516 323 aa9.66□□□□□ -0.86
CLCN3-210ENST00000515420 ADMP35318 185 aa9.66□□□□□ -0.86
CLCN3-210ENST00000515420 RELQ04864 619 aaPredicted RBP9.66□□□□□ -0.86
CLCN3-210ENST00000515420 RBMS2Q15434 407 aaKnown RBP9.66□□□□□ -0.86
CLCN3-210ENST00000515420 Q56UQ5 140 aa9.66□□□□□ -0.86
CLCN3-210ENST00000515420 UNQ9165/PRO28630Q6UXU0 137 aa9.66□□□□□ -0.86
CLCN3-210ENST00000515420 LGI3Q8N145 548 aa9.66□□□□□ -0.86
CLCN3-210ENST00000515420 GPR146Q96CH1 333 aa9.66□□□□□ -0.86
CLCN3-210ENST00000515420 CACNG5Q9UF02 275 aa9.66□□□□□ -0.86
CLCN3-210ENST00000515420 IGHV3-21A0A0B4J1V1 117 aa9.65□□□□□ -0.86
CLCN3-210ENST00000515420 TRAV25A0A0B4J276 109 aa9.65□□□□□ -0.86
CLCN3-210ENST00000515420 IZUMO1RA6ND01 250 aa9.65□□□□□ -0.86
CLCN3-210ENST00000515420 K7EMT4 169 aa9.65□□□□□ -0.86
CLCN3-210ENST00000515420 NUPL2O15504 423 aaKnown RBP9.65□□□□□ -0.86
CLCN3-210ENST00000515420 CTSGP08311 255 aa9.65□□□□□ -0.86
CLCN3-210ENST00000515420 FRMD6-AS1P0C7T7 363 aa9.65□□□□□ -0.86
CLCN3-210ENST00000515420 SULT1A3P0DMM9 295 aa9.65□□□□□ -0.86
CLCN3-210ENST00000515420 SULT1A4P0DMN0 295 aa9.65□□□□□ -0.86
CLCN3-210ENST00000515420 IGHV4-30-4P0DP06 118 aa9.65□□□□□ -0.86
CLCN3-210ENST00000515420 RNASE2P10153 161 aaKnown RBP9.65□□□□□ -0.86
CLCN3-210ENST00000515420 HTR2BP41595 481 aa9.65□□□□□ -0.86
CLCN3-210ENST00000515420 NPBWR1P48145 328 aa9.65□□□□□ -0.86
CLCN3-210ENST00000515420 INPP1P49441 399 aa9.65□□□□□ -0.86
CLCN3-210ENST00000515420 CCR6P51684 374 aa9.65□□□□□ -0.86
CLCN3-210ENST00000515420 SPINK9Q5DT21 86 aa9.65□□□□□ -0.86
CLCN3-210ENST00000515420 NMSQ5H8A3 153 aa9.65□□□□□ -0.86
CLCN3-210ENST00000515420 TRIQKQ629K1 86 aa9.65□□□□□ -0.86
CLCN3-210ENST00000515420 ZNF57Q68EA5 555 aaPredicted RBP9.65□□□□□ -0.86
CLCN3-210ENST00000515420 UBAC2Q8NBM4 344 aa9.65□□□□□ -0.86
CLCN3-210ENST00000515420 UXS1Q8NBZ7 420 aa9.65□□□□□ -0.86
CLCN3-210ENST00000515420 CHRDL1Q9BU40 450 aa9.65□□□□□ -0.86
CLCN3-210ENST00000515420 C19orf73Q9NVV2 129 aa9.65□□□□□ -0.86
CLCN3-210ENST00000515420 C15orf62A8K5M9 175 aa9.64□□□□□ -0.87
CLCN3-210ENST00000515420 ZNF785A8K8V0 405 aa9.64□□□□□ -0.87
CLCN3-210ENST00000515420 UBE2MP61081 183 aaKnown RBP9.64□□□□□ -0.87
CLCN3-210ENST00000515420 BAK1Q16611 211 aa9.64□□□□□ -0.87
CLCN3-210ENST00000515420 TM4SF20Q53R12 229 aa9.64□□□□□ -0.87
CLCN3-210ENST00000515420 LINC00299Q6ZSB3 139 aa9.64□□□□□ -0.87
CLCN3-210ENST00000515420 LRTM2Q8N967 370 aa9.64□□□□□ -0.87
CLCN3-210ENST00000515420 DUSP18Q8NEJ0 188 aa9.64□□□□□ -0.87
CLCN3-210ENST00000515420 CACNG8Q8WXS5 425 aa9.64□□□□□ -0.87
CLCN3-210ENST00000515420 PINX1Q96BK5 328 aaKnown RBP9.64□□□□□ -0.87
CLCN3-210ENST00000515420 C7orf50Q9BRJ6 194 aaKnown RBP9.64□□□□□ -0.87
CLCN3-210ENST00000515420 MLXQ9UH92 298 aa9.64□□□□□ -0.87
CLCN3-210ENST00000515420 DNAH9Q9NYC9 4486 aa9.64□□□□□ -0.87
CLCN3-210ENST00000515420 IGHV3-35A0A0C4DH35 117 aa9.63□□□□□ -0.87
CLCN3-210ENST00000515420 A0A1B0GU03 582 aa9.63□□□□□ -0.87
CLCN3-210ENST00000515420 GNG7O60262 68 aa9.63□□□□□ -0.87
CLCN3-210ENST00000515420 SLC25A6P12236 298 aa9.63□□□□□ -0.87
CLCN3-210ENST00000515420 EDN2P20800 178 aa9.63□□□□□ -0.87
CLCN3-210ENST00000515420 SMCO1Q147U7 214 aa9.63□□□□□ -0.87
CLCN3-210ENST00000515420 C2orf83Q53S99 150 aa9.63□□□□□ -0.87
CLCN3-210ENST00000515420 C11orf87Q6NUJ2 197 aa9.63□□□□□ -0.87
CLCN3-210ENST00000515420 TMED4Q7Z7H5 227 aa9.63□□□□□ -0.87
CLCN3-210ENST00000515420 NOXA1Q86UR1 476 aa9.63□□□□□ -0.87
CLCN3-210ENST00000515420 TMEM61Q8N0U2 210 aa9.63□□□□□ -0.87
CLCN3-210ENST00000515420 CENPSQ8N2Z9 138 aa9.63□□□□□ -0.87
CLCN3-210ENST00000515420 OR10C1Q96KK4 312 aa9.63□□□□□ -0.87
CLCN3-210ENST00000515420 SDHCQ99643 169 aaPredicted RBP9.63□□□□□ -0.87
CLCN3-210ENST00000515420 HSPB7Q9UBY9 170 aa9.63□□□□□ -0.87
CLCN3-210ENST00000515420 U3KQK5 164 aa9.63□□□□□ -0.87
CLCN3-210ENST00000515420 RPS10-NUDT3A0A1W2PQS6 291 aa9.62□□□□□ -0.87
CLCN3-210ENST00000515420 CENPXA8MT69 81 aa9.62□□□□□ -0.87
CLCN3-210ENST00000515420 CEBPZOSA8MTT3 80 aa9.62□□□□□ -0.87
CLCN3-210ENST00000515420 SCGB2A1O75556 95 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms