RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 FAM74A1Q5RGS3 127 aa12.68□□□□□ -0.38
NUP54-214ENST00000514307 PRDM13Q9H4Q3 707 aa12.68□□□□□ -0.38
NUP54-214ENST00000514307 MED9Q9NWA0 146 aa12.68□□□□□ -0.38
NUP54-214ENST00000514307 MED13LQ71F56 2210 aa12.68□□□□□ -0.38
NUP54-214ENST00000514307 REG1AP05451 166 aa12.67□□□□□ -0.38
NUP54-214ENST00000514307 CTRB1P17538 263 aa12.67□□□□□ -0.38
NUP54-214ENST00000514307 OPRK1P41145 380 aa12.67□□□□□ -0.38
NUP54-214ENST00000514307 IER3P46695 156 aa12.67□□□□□ -0.38
NUP54-214ENST00000514307 RAB2AP61019 212 aa12.67□□□□□ -0.38
NUP54-214ENST00000514307 SSBP2P81877 361 aaPredicted RBP12.67□□□□□ -0.38
NUP54-214ENST00000514307 GAMTQ14353 236 aa12.67□□□□□ -0.38
NUP54-214ENST00000514307 LY6EQ16553 131 aa12.67□□□□□ -0.38
NUP54-214ENST00000514307 AKIRIN2Q53H80 203 aa12.67□□□□□ -0.38
NUP54-214ENST00000514307 CTRB2Q6GPI1 263 aa12.67□□□□□ -0.38
NUP54-214ENST00000514307 TREML4Q6UXN2 200 aa12.67□□□□□ -0.38
NUP54-214ENST00000514307 Q6YL49 198 aa12.67□□□□□ -0.38
NUP54-214ENST00000514307 SPNS3Q6ZMD2 512 aa12.67□□□□□ -0.38
NUP54-214ENST00000514307 TMEM182Q6ZP80 229 aaPredicted RBP12.67□□□□□ -0.38
NUP54-214ENST00000514307 BCL6BQ8N143 479 aaPredicted RBP12.67□□□□□ -0.38
NUP54-214ENST00000514307 SGMS2Q8NHU3 365 aa12.67□□□□□ -0.38
NUP54-214ENST00000514307 MISP3Q96FF7 219 aa12.67□□□□□ -0.38
NUP54-214ENST00000514307 SH3BGRL3Q9H299 93 aa12.67□□□□□ -0.38
NUP54-214ENST00000514307 PARP11Q9NR21 331 aa12.67□□□□□ -0.38
NUP54-214ENST00000514307 YAE1D1Q9NRH1 226 aa12.67□□□□□ -0.38
NUP54-214ENST00000514307 SOX21Q9Y651 276 aaPredicted RBP12.67□□□□□ -0.38
NUP54-214ENST00000514307 ANKRD17O75179 2603 aaKnown RBP12.67□□□□□ -0.38
NUP54-214ENST00000514307 CREBBPQ92793 2442 aa12.66□□□□□ -0.38
NUP54-214ENST00000514307 RUNX1Q01196 453 aa12.66□□□□□ -0.38
NUP54-214ENST00000514307 ARSJQ5FYB0 599 aaPredicted RBP12.66□□□□□ -0.38
NUP54-214ENST00000514307 RBMS3Q6XE24 437 aaKnown RBP12.66□□□□□ -0.38
NUP54-214ENST00000514307 SLC16A13Q7RTY0 426 aa12.66□□□□□ -0.38
NUP54-214ENST00000514307 TMEM219Q86XT9 240 aa12.66□□□□□ -0.38
NUP54-214ENST00000514307 TMUB1Q9BVT8 246 aa12.66□□□□□ -0.38
NUP54-214ENST00000514307 NPCDR1Q9BY65 106 aa12.66□□□□□ -0.38
NUP54-214ENST00000514307 APELAP0DMC3 54 aa12.65□□□□□ -0.38
NUP54-214ENST00000514307 EGR2P11161 476 aaPredicted RBP12.65□□□□□ -0.38
NUP54-214ENST00000514307 ACOT6Q3I5F7 207 aaPredicted RBP12.65□□□□□ -0.38
NUP54-214ENST00000514307 FBLN7Q53RD9 439 aa12.65□□□□□ -0.38
NUP54-214ENST00000514307 UNQ5815/PRO19632Q6UWF5 114 aa12.65□□□□□ -0.38
NUP54-214ENST00000514307 LFNGQ8NES3 379 aa12.65□□□□□ -0.38
NUP54-214ENST00000514307 RSG1Q9BU20 258 aa12.65□□□□□ -0.38
NUP54-214ENST00000514307 LSM4Q9Y4Z0 139 aaKnown RBP12.65□□□□□ -0.38
NUP54-214ENST00000514307 MYO9AB2RTY4 2548 aa12.65□□□□□ -0.38
NUP54-214ENST00000514307 RPL29P47914 159 aaKnown RBP12.64□□□□□ -0.39
NUP54-214ENST00000514307 SELENOTP62341 195 aa12.64□□□□□ -0.39
NUP54-214ENST00000514307 MLANAQ16655 118 aa12.64□□□□□ -0.39
NUP54-214ENST00000514307 TMEM41BQ5BJD5 291 aa12.64□□□□□ -0.39
NUP54-214ENST00000514307 C9orf152Q5JTZ5 239 aa12.64□□□□□ -0.39
NUP54-214ENST00000514307 SLC7A5P1Q8MH63 180 aa12.64□□□□□ -0.39
NUP54-214ENST00000514307 OR5T1Q8NG75 326 aa12.64□□□□□ -0.39
NUP54-214ENST00000514307 OR2T6Q8NHC8 308 aa12.64□□□□□ -0.39
NUP54-214ENST00000514307 FAM213BQ8TBF2 198 aa12.64□□□□□ -0.39
NUP54-214ENST00000514307 ACY3Q96HD9 319 aa12.64□□□□□ -0.39
NUP54-214ENST00000514307 FAM103A1Q9BTL3 118 aaKnown RBP12.64□□□□□ -0.39
NUP54-214ENST00000514307 AGPAT2O15120 278 aa12.63□□□□□ -0.39
NUP54-214ENST00000514307 TSPAN15O95858 294 aa12.63□□□□□ -0.39
NUP54-214ENST00000514307 MT-CO2P00403 227 aa12.63□□□□□ -0.39
NUP54-214ENST00000514307 IGHV4-59P01825 116 aa12.63□□□□□ -0.39
NUP54-214ENST00000514307 HBE1P02100 147 aa12.63□□□□□ -0.39
NUP54-214ENST00000514307 FABP1P07148 127 aa12.63□□□□□ -0.39
NUP54-214ENST00000514307 H2AFB1P0C5Y9 115 aa12.63□□□□□ -0.39
NUP54-214ENST00000514307 FFAR4Q5NUL3 377 aa12.63□□□□□ -0.39
NUP54-214ENST00000514307 SLC35E3Q7Z769 313 aa12.63□□□□□ -0.39
NUP54-214ENST00000514307 TMEM86BQ8N661 226 aa12.63□□□□□ -0.39
NUP54-214ENST00000514307 COMMD1Q8N668 190 aa12.63□□□□□ -0.39
NUP54-214ENST00000514307 FAM110DQ8TAY7 271 aaPredicted RBP12.63□□□□□ -0.39
NUP54-214ENST00000514307 PCNPQ8WW12 178 aaKnown RBP12.63□□□□□ -0.39
NUP54-214ENST00000514307 NPIPB3Q92617 1050 aa12.63□□□□□ -0.39
NUP54-214ENST00000514307 MARC2Q969Z3 335 aa12.63□□□□□ -0.39
NUP54-214ENST00000514307 C19orf24Q9BVV8 132 aa12.63□□□□□ -0.39
NUP54-214ENST00000514307 TMEM160Q9NX00 188 aa12.63□□□□□ -0.39
NUP54-214ENST00000514307 PLA2G2EQ9NZK7 142 aa12.63□□□□□ -0.39
NUP54-214ENST00000514307 PDZD2O15018 2839 aa12.63□□□□□ -0.39
NUP54-214ENST00000514307 WNK2Q9Y3S1 2297 aa12.63□□□□□ -0.39
NUP54-214ENST00000514307 TRAV30A0A087WSZ9 112 aa12.62□□□□□ -0.39
NUP54-214ENST00000514307 SCGB2A1O75556 95 aa12.62□□□□□ -0.39
NUP54-214ENST00000514307 IGHG2P01859 326 aa12.62□□□□□ -0.39
NUP54-214ENST00000514307 M6PRP20645 277 aa12.62□□□□□ -0.39
NUP54-214ENST00000514307 MFAP2P55001 183 aa12.62□□□□□ -0.39
NUP54-214ENST00000514307 ZNF616Q08AN1 781 aa12.62□□□□□ -0.39
NUP54-214ENST00000514307 PXDC1Q5TGL8 231 aa12.62□□□□□ -0.39
NUP54-214ENST00000514307 Q6ZRG5 221 aa12.62□□□□□ -0.39
NUP54-214ENST00000514307 TMEM116Q8NCL8 245 aa12.62□□□□□ -0.39
NUP54-214ENST00000514307 MGST2Q99735 147 aa12.62□□□□□ -0.39
NUP54-214ENST00000514307 HSPB9Q9BQS6 159 aa12.62□□□□□ -0.39
NUP54-214ENST00000514307 ACTR3CQ9C0K3 210 aaPredicted RBP12.62□□□□□ -0.39
NUP54-214ENST00000514307 HRH4Q9H3N8 390 aa12.62□□□□□ -0.39
NUP54-214ENST00000514307 SLC39A9Q9NUM3 307 aa12.62□□□□□ -0.39
NUP54-214ENST00000514307 VPREB3Q9UKI3 123 aa12.62□□□□□ -0.39
NUP54-214ENST00000514307 SLC45A2Q9UMX9 530 aa12.62□□□□□ -0.39
NUP54-214ENST00000514307 CCDC168Q8NDH2 2452 aa12.62□□□□□ -0.39
NUP54-214ENST00000514307 PRRC2AP48634 2157 aaKnown RBP12.62□□□□□ -0.39
NUP54-214ENST00000514307 TRAV41A0A0B4J266 112 aa12.61□□□□□ -0.39
NUP54-214ENST00000514307 MDFIC2A0A1B0GVS7 189 aa12.61□□□□□ -0.39
NUP54-214ENST00000514307 ZFP92A6NM28 416 aa12.61□□□□□ -0.39
NUP54-214ENST00000514307 I3L2K1 104 aa12.61□□□□□ -0.39
NUP54-214ENST00000514307 ATP6V0E1O15342 81 aa12.61□□□□□ -0.39
NUP54-214ENST00000514307 AMY1AP04745 511 aa12.61□□□□□ -0.39
NUP54-214ENST00000514307 IGF1P05019 195 aa12.61□□□□□ -0.39
NUP54-214ENST00000514307 NPBWR1P48145 328 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms