RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 ERVK11-1P61568 191 aa8.89□□□□□ -0.99
LIMCH1-205ENST00000503057 C3orf36Q3SXR2 165 aa8.89□□□□□ -0.99
LIMCH1-205ENST00000503057 REC114Q7Z4M0 266 aa8.89□□□□□ -0.99
LIMCH1-205ENST00000503057 GAFA1Q96PS6 74 aa8.89□□□□□ -0.99
LIMCH1-205ENST00000503057 MGST2Q99735 147 aa8.89□□□□□ -0.99
LIMCH1-205ENST00000503057 CLEC5AQ9NY25 188 aa8.89□□□□□ -0.99
LIMCH1-205ENST00000503057 ZDBF2Q9HCK1 2354 aa8.89□□□□□ -0.99
LIMCH1-205ENST00000503057 IZUMO1RA6ND01 250 aa8.89□□□□□ -0.99
LIMCH1-205ENST00000503057 GFRA3O60609 400 aa8.89□□□□□ -0.99
LIMCH1-205ENST00000503057 KIAA1644Q3SXP7 199 aa8.89□□□□□ -0.99
LIMCH1-205ENST00000503057 TMEM78Q5T7P6 136 aa8.89□□□□□ -0.99
LIMCH1-205ENST00000503057 PRSS1P07477 247 aa8.89□□□□□ -0.99
LIMCH1-205ENST00000503057 CLEC2AQ6UVW9 174 aa8.89□□□□□ -0.99
LIMCH1-205ENST00000503057 Q6ZS92 163 aa8.89□□□□□ -0.99
LIMCH1-205ENST00000503057 SRSF12Q8WXF0 261 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-205ENST00000503057 H3BTX0 84 aa8.89□□□□□ -0.99
LIMCH1-205ENST00000503057 SRSF6Q13247 344 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-205ENST00000503057 PIMREGQ9BSJ6 248 aa8.89□□□□□ -0.99
LIMCH1-205ENST00000503057 IGKV1D-33P01593 117 aa8.88□□□□□ -0.99
LIMCH1-205ENST00000503057 IGKV1-33P01594 117 aa8.88□□□□□ -0.99
LIMCH1-205ENST00000503057 SELLP14151 372 aa8.88□□□□□ -0.99
LIMCH1-205ENST00000503057 WFIKKN1Q96NZ8 548 aa8.88□□□□□ -0.99
LIMCH1-205ENST00000503057 OSTCQ9NRP0 149 aa8.88□□□□□ -0.99
LIMCH1-205ENST00000503057 RNF151Q2KHN1 245 aa8.88□□□□□ -0.99
LIMCH1-205ENST00000503057 WDR86Q86TI4 376 aa8.88□□□□□ -0.99
LIMCH1-205ENST00000503057 TMEM116Q8NCL8 245 aa8.88□□□□□ -0.99
LIMCH1-205ENST00000503057 OR8A1Q8NGG7 326 aa8.88□□□□□ -0.99
LIMCH1-205ENST00000503057 UQCR10Q9UDW1 63 aa8.88□□□□□ -0.99
LIMCH1-205ENST00000503057 C15orf62A8K5M9 175 aa8.88□□□□□ -0.99
LIMCH1-205ENST00000503057 LEPROTL1O95214 131 aa8.88□□□□□ -0.99
LIMCH1-205ENST00000503057 COL5A1-AS1Q5SY13 56 aa8.88□□□□□ -0.99
LIMCH1-205ENST00000503057 SGK494Q96LW2 274 aa8.88□□□□□ -0.99
LIMCH1-205ENST00000503057 ID1P41134 155 aa8.88□□□□□ -0.99
LIMCH1-205ENST00000503057 PAX9P55771 341 aa8.88□□□□□ -0.99
LIMCH1-205ENST00000503057 VPS25Q9BRG1 176 aa8.88□□□□□ -0.99
LIMCH1-205ENST00000503057 ELOVL1Q9BW60 279 aa8.88□□□□□ -0.99
LIMCH1-205ENST00000503057 PTPRSQ13332 1948 aa8.88□□□□□ -0.99
LIMCH1-205ENST00000503057 C9JQL5 133 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 TMEM178BH3BS89 294 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 FOXH1O75593 365 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 TMEM200BQ69YZ2 307 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 TEX38Q6PEX7 206 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 ZNF474Q6S9Z5 364 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 OCC1Q8TAD7 63 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 RPP21Q9H633 154 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 TRAV3A0A0B4J244 114 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 A0A1W2PS18 150 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 F5H697 171 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 SAPCD1Q5SSQ6 148 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 SPACA3Q8IXA5 215 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 ZCCHC24Q8N2G6 241 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 C11orf42Q8N5U0 333 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 EEF1AKMT3Q96AZ1 226 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 KCNS1Q96KK3 526 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 ZFP30Q9Y2G7 519 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 FNDC10F2Z333 226 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 LOXL3P58215 753 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 RELQ04864 619 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 SLC25A48Q6ZT89 311 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 SLC25A33Q9BSK2 321 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 PDLIM4P50479 330 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 PPP1R27Q86WC6 154 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 ARPC1AQ92747 370 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 WNT10AQ9GZT5 417 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 Q9H3A6 140 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 OTORQ9NRC9 128 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 FAM186AA6NE01 2351 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 C9JCJ5 164 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 NBR2O15453 112 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 ADMP35318 185 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 ATP5G2Q06055 141 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 FOXL1Q12952 345 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 SPANXN1Q5VSR9 72 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 C16orf92Q96LL3 132 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 CRIM1Q9NZV1 1036 aa8.87□□□□□ -0.99
LIMCH1-205ENST00000503057 LOC389332A0A1B0GUA5 103 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 IFITM10A6NMD0 228 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 ZNF25P17030 456 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 FAM90A2PQ658T7 463 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 HIST3H2BBQ8N257 126 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 NCOR1P1Q9H4R4 102 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 CBLN4Q9NTU7 201 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 A0A0G2JNJ9 132 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 BTF3P20290 206 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 FAM71F2Q6NXP2 309 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 ATG101Q9BSB4 218 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 Q9UFV3 132 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 HLA-DRB1P01911 266 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 CKS2P33552 79 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 LINC01551Q86U37 167 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 OR10J6PQ8NGY7 276 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 MYOZ3Q8TDC0 251 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 TMEM190Q8WZ59 177 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 GPR82Q96P67 336 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 PVRIGQ6DKI7 326 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 DTX1Q86Y01 620 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 OR10W1Q8NGF6 305 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 GNB1LQ9BYB4 327 aa8.86□□□□□ -0.99
LIMCH1-205ENST00000503057 RNASE7Q9H1E1 156 aaKnown RBP8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms