RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 KMT2AQ03164 3969 aa9.74□□□□□ -0.85
VCL-205ENST00000478896 DNASE2O00115 360 aaPredicted RBP9.73□□□□□ -0.85
VCL-205ENST00000478896 ST8SIA3O43173 380 aa9.73□□□□□ -0.85
VCL-205ENST00000478896 NAT1P18440 290 aa9.73□□□□□ -0.85
VCL-205ENST00000478896 RPL11P62913 178 aaKnown RBP9.73□□□□□ -0.85
VCL-205ENST00000478896 ERHP84090 104 aaKnown RBP9.73□□□□□ -0.85
VCL-205ENST00000478896 PRCDQ00LT1 54 aa9.73□□□□□ -0.85
VCL-205ENST00000478896 ZNF114Q8NC26 417 aa9.73□□□□□ -0.85
VCL-205ENST00000478896 MRGPRFQ96AM1 343 aa9.73□□□□□ -0.85
VCL-205ENST00000478896 DEFB4AO15263 64 aa9.72□□□□□ -0.85
VCL-205ENST00000478896 CD5P06127 495 aa9.72□□□□□ -0.85
VCL-205ENST00000478896 LSM3P62310 102 aaKnown RBP9.72□□□□□ -0.85
VCL-205ENST00000478896 TMEM187Q14656 261 aa9.72□□□□□ -0.85
VCL-205ENST00000478896 SPINK9Q5DT21 86 aa9.72□□□□□ -0.85
VCL-205ENST00000478896 LEMD1Q68G75 181 aa9.72□□□□□ -0.85
VCL-205ENST00000478896 ST8SIA2Q92186 375 aa9.72□□□□□ -0.85
VCL-205ENST00000478896 ZNF414Q96IQ9 312 aa9.72□□□□□ -0.85
VCL-205ENST00000478896 SEC22AQ96IW7 307 aa9.72□□□□□ -0.85
VCL-205ENST00000478896 FAM212BQ9NTI7 297 aaPredicted RBP9.72□□□□□ -0.85
VCL-205ENST00000478896 IGHV3-66A0A0C4DH42 116 aa9.71□□□□□ -0.86
VCL-205ENST00000478896 RPS19P39019 145 aaKnown RBP9.71□□□□□ -0.86
VCL-205ENST00000478896 NPBWR1P48145 328 aa9.71□□□□□ -0.86
VCL-205ENST00000478896 DEFB131AP59861 70 aa9.71□□□□□ -0.86
VCL-205ENST00000478896 FAM90A2PQ658T7 463 aa9.71□□□□□ -0.86
VCL-205ENST00000478896 STHQ8IWL8 128 aa9.71□□□□□ -0.86
VCL-205ENST00000478896 SLC35G3Q8N808 338 aa9.71□□□□□ -0.86
VCL-205ENST00000478896 DUSP18Q8NEJ0 188 aa9.71□□□□□ -0.86
VCL-205ENST00000478896 C2CD4CQ8TF44 421 aa9.71□□□□□ -0.86
VCL-205ENST00000478896 MS4A6AQ9H2W1 248 aa9.71□□□□□ -0.86
VCL-205ENST00000478896 TMEM231Q9H6L2 316 aa9.71□□□□□ -0.86
VCL-205ENST00000478896 RABAC1Q9UI14 185 aa9.71□□□□□ -0.86
VCL-205ENST00000478896 PUS1Q9Y606 427 aaKnown RBP eCLIP9.71□□□□□ -0.86
VCL-205ENST00000478896 SMIM31A0A1B0GVY4 71 aa9.7□□□□□ -0.86
VCL-205ENST00000478896 DFFBO76075 338 aa9.7□□□□□ -0.86
VCL-205ENST00000478896 IGKV1-39P01597 117 aa9.7□□□□□ -0.86
VCL-205ENST00000478896 IGKV1D-39P04432 117 aa9.7□□□□□ -0.86
VCL-205ENST00000478896 SNCAP37840 140 aa9.7□□□□□ -0.86
VCL-205ENST00000478896 AKR1C2P52895 323 aa9.7□□□□□ -0.86
VCL-205ENST00000478896 HSPE1P61604 102 aaKnown RBP9.7□□□□□ -0.86
VCL-205ENST00000478896 KCTD21Q4G0X4 260 aa9.7□□□□□ -0.86
VCL-205ENST00000478896 TOMM20LQ6UXN7 152 aa9.7□□□□□ -0.86
VCL-205ENST00000478896 ZNF600Q6ZNG1 722 aa9.7□□□□□ -0.86
VCL-205ENST00000478896 SNX29P2Q8IUI4 249 aa9.7□□□□□ -0.86
VCL-205ENST00000478896 LYSMD2Q8IV50 215 aa9.7□□□□□ -0.86
VCL-205ENST00000478896 PDCD10Q9BUL8 212 aa9.7□□□□□ -0.86
VCL-205ENST00000478896 FRAS1Q86XX4 4008 aa9.7□□□□□ -0.86
VCL-205ENST00000478896 SCGB2A1O75556 95 aa9.69□□□□□ -0.86
VCL-205ENST00000478896 APOHP02749 345 aaPredicted RBP9.69□□□□□ -0.86
VCL-205ENST00000478896 PGAM2P15259 253 aa9.69□□□□□ -0.86
VCL-205ENST00000478896 RCVRNP35243 200 aa9.69□□□□□ -0.86
VCL-205ENST00000478896 HOXA1P49639 335 aaPredicted RBP9.69□□□□□ -0.86
VCL-205ENST00000478896 GPX8Q8TED1 209 aa9.69□□□□□ -0.86
VCL-205ENST00000478896 VSIRQ9H7M9 311 aa9.69□□□□□ -0.86
VCL-205ENST00000478896 VCX3AQ9NNX9 186 aa9.69□□□□□ -0.86
VCL-205ENST00000478896 COMMD3Q9UBI1 195 aa9.69□□□□□ -0.86
VCL-205ENST00000478896 IGLL5B9A064 214 aa9.68□□□□□ -0.86
VCL-205ENST00000478896 CORTO00230 105 aa9.68□□□□□ -0.86
VCL-205ENST00000478896 IFNA17P01571 189 aa9.68□□□□□ -0.86
VCL-205ENST00000478896 OPRK1P41145 380 aa9.68□□□□□ -0.86
VCL-205ENST00000478896 UCP3P55916 312 aa9.68□□□□□ -0.86
VCL-205ENST00000478896 TCTAP57738 103 aa9.68□□□□□ -0.86
VCL-205ENST00000478896 IZUMO4Q1ZYL8 232 aa9.68□□□□□ -0.86
VCL-205ENST00000478896 FAM24BQ8N5W8 94 aa9.68□□□□□ -0.86
VCL-205ENST00000478896 STXBP6Q8NFX7 210 aa9.68□□□□□ -0.86
VCL-205ENST00000478896 ZFAND3Q9H8U3 227 aa9.68□□□□□ -0.86
VCL-205ENST00000478896 SCPEP1Q9HB40 452 aa9.68□□□□□ -0.86
VCL-205ENST00000478896 ENY2Q9NPA8 101 aa9.68□□□□□ -0.86
VCL-205ENST00000478896 TRAV2A0A0B4J234 112 aa9.67□□□□□ -0.86
VCL-205ENST00000478896 A0A1W2PS18 150 aa9.67□□□□□ -0.86
VCL-205ENST00000478896 C11orf94C9JXX5 98 aa9.67□□□□□ -0.86
VCL-205ENST00000478896 NPPCP23582 126 aa9.67□□□□□ -0.86
VCL-205ENST00000478896 SUB1P53999 127 aaKnown RBP eCLIP9.67□□□□□ -0.86
VCL-205ENST00000478896 RNASE12Q5GAN4 147 aaKnown RBP9.67□□□□□ -0.86
VCL-205ENST00000478896 CENPSQ8N2Z9 138 aa9.67□□□□□ -0.86
VCL-205ENST00000478896 LILRB2Q8N423 598 aa9.67□□□□□ -0.86
VCL-205ENST00000478896 RNASE11Q8TAA1 199 aaKnown RBP9.67□□□□□ -0.86
VCL-205ENST00000478896 NARS2Q96I59 477 aaKnown RBP9.67□□□□□ -0.86
VCL-205ENST00000478896 METTL26Q96S19 204 aa9.67□□□□□ -0.86
VCL-205ENST00000478896 KRTAP17-1Q9BYP8 105 aa9.67□□□□□ -0.86
VCL-205ENST00000478896 M0QYG6 137 aa9.66□□□□□ -0.86
VCL-205ENST00000478896 ATG12O94817 140 aa9.66□□□□□ -0.86
VCL-205ENST00000478896 TMEM50AO95807 157 aa9.66□□□□□ -0.86
VCL-205ENST00000478896 APOA1P02647 267 aa9.66□□□□□ -0.86
VCL-205ENST00000478896 PI3P19957 117 aa9.66□□□□□ -0.86
VCL-205ENST00000478896 PIGPP57054 158 aa9.66□□□□□ -0.86
VCL-205ENST00000478896 PRR20EP86478 221 aa9.66□□□□□ -0.86
VCL-205ENST00000478896 PRR20CP86479 221 aa9.66□□□□□ -0.86
VCL-205ENST00000478896 PRR20DP86480 221 aa9.66□□□□□ -0.86
VCL-205ENST00000478896 PRR20BP86481 221 aa9.66□□□□□ -0.86
VCL-205ENST00000478896 PRR20AP86496 221 aa9.66□□□□□ -0.86
VCL-205ENST00000478896 TRIM16LQ309B1 348 aa9.66□□□□□ -0.86
VCL-205ENST00000478896 Q8NAQ8 132 aa9.66□□□□□ -0.86
VCL-205ENST00000478896 TMEM230Q96A57 120 aa9.66□□□□□ -0.86
VCL-205ENST00000478896 YIPF6Q96EC8 236 aa9.66□□□□□ -0.86
VCL-205ENST00000478896 ZNF486Q96H40 463 aaPredicted RBP9.66□□□□□ -0.86
VCL-205ENST00000478896 IGHV4-28A0A0C4DH34 117 aa9.65□□□□□ -0.86
VCL-205ENST00000478896 A0A1B0GU03 582 aa9.65□□□□□ -0.86
VCL-205ENST00000478896 FAM25AB3EWG3 89 aa9.65□□□□□ -0.86
VCL-205ENST00000478896 FAM25CB3EWG5 89 aa9.65□□□□□ -0.86
VCL-205ENST00000478896 FAM25GB3EWG6 89 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms