RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 FBXO7Q9Y3I1 522 aa9.37□□□□□ -0.91
USP54-209ENST00000464635 TRAV1-1A0A0B4J248 108 aa9.36□□□□□ -0.91
USP54-209ENST00000464635 C17orf112F2Z3M2 114 aa9.36□□□□□ -0.91
USP54-209ENST00000464635 H3BP45 60 aa9.36□□□□□ -0.91
USP54-209ENST00000464635 CORTO00230 105 aa9.36□□□□□ -0.91
USP54-209ENST00000464635 NPFFO15130 113 aa9.36□□□□□ -0.91
USP54-209ENST00000464635 NBR2O15453 112 aa9.36□□□□□ -0.91
USP54-209ENST00000464635 SLC25A17O43808 307 aa9.36□□□□□ -0.91
USP54-209ENST00000464635 ACTL6BO94805 426 aa9.36□□□□□ -0.91
USP54-209ENST00000464635 IGHV4-59P01825 116 aa9.36□□□□□ -0.91
USP54-209ENST00000464635 SNCAP37840 140 aa9.36□□□□□ -0.91
USP54-209ENST00000464635 TMEM267Q0VDI3 215 aaPredicted RBP9.36□□□□□ -0.91
USP54-209ENST00000464635 KLRD1Q13241 179 aa9.36□□□□□ -0.91
USP54-209ENST00000464635 PMS2P11Q13670 270 aa9.36□□□□□ -0.91
USP54-209ENST00000464635 ZNF562Q6V9R5 426 aa9.36□□□□□ -0.91
USP54-209ENST00000464635 SLC7A5P1Q8MH63 180 aa9.36□□□□□ -0.91
USP54-209ENST00000464635 PIP4P2Q8N4L2 257 aa9.36□□□□□ -0.91
USP54-209ENST00000464635 LFNGQ8NES3 379 aa9.36□□□□□ -0.91
USP54-209ENST00000464635 MARC2Q969Z3 335 aa9.36□□□□□ -0.91
USP54-209ENST00000464635 EAF1Q96JC9 268 aaPredicted RBP9.36□□□□□ -0.91
USP54-209ENST00000464635 KCNIP2Q9NS61 270 aa9.36□□□□□ -0.91
USP54-209ENST00000464635 WDR83OSQ9Y284 106 aa9.36□□□□□ -0.91
USP54-209ENST00000464635 MFSD2BA6NFX1 497 aa9.35□□□□□ -0.91
USP54-209ENST00000464635 ZNF705EA8MWA4 302 aaPredicted RBP9.35□□□□□ -0.91
USP54-209ENST00000464635 TEX46H3BTG2 121 aa9.35□□□□□ -0.91
USP54-209ENST00000464635 NDUFS6O75380 124 aaKnown RBP9.35□□□□□ -0.91
USP54-209ENST00000464635 FBXO24O75426 580 aa9.35□□□□□ -0.91
USP54-209ENST00000464635 RNASE2P10153 161 aaKnown RBP9.35□□□□□ -0.91
USP54-209ENST00000464635 RPL27AP46776 148 aaKnown RBP9.35□□□□□ -0.91
USP54-209ENST00000464635 SSX2Q16385 188 aa9.35□□□□□ -0.91
USP54-209ENST00000464635 C5orf64Q2M2E5 130 aa9.35□□□□□ -0.91
USP54-209ENST00000464635 KLK9Q2XQG4 91 aa9.35□□□□□ -0.91
USP54-209ENST00000464635 ETFRF1Q6IPR1 90 aa9.35□□□□□ -0.91
USP54-209ENST00000464635 SLC25A24Q6NUK1 477 aa9.35□□□□□ -0.91
USP54-209ENST00000464635 BTNL8Q6UX41 500 aa9.35□□□□□ -0.91
USP54-209ENST00000464635 LHFPL4Q7Z7J7 247 aa9.35□□□□□ -0.91
USP54-209ENST00000464635 HSD17B11Q8NBQ5 300 aa9.35□□□□□ -0.91
USP54-209ENST00000464635 TMEM170AQ8WVE7 144 aa9.35□□□□□ -0.91
USP54-209ENST00000464635 WFDC12Q8WWY7 111 aa9.35□□□□□ -0.91
USP54-209ENST00000464635 TMEM68Q96MH6 324 aa9.35□□□□□ -0.91
USP54-209ENST00000464635 METTL1Q9UBP6 276 aaKnown RBP9.35□□□□□ -0.91
USP54-209ENST00000464635 KLK9Q9UKQ9 250 aa9.35□□□□□ -0.91
USP54-209ENST00000464635 A0A1B0GW64 132 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 A0A1W2PRD5 423 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 A0A1W2PRF3 423 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 A0A1W2PRM7 423 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 CGB1A6NKQ9 187 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 CA2P00918 260 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 IGKV1D-33P01593 117 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 IGKV1-33P01594 117 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 HBE1P02100 147 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 IFNA4P05014 189 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 SAA4P35542 130 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 RAB31Q13636 194 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 FAM74A1Q5RGS3 127 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 AKR1C8PQ5T2L2 129 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 PXDC1Q5TGL8 231 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 OR8G2PQ6IF36 304 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 TMEM144Q7Z5S9 345 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 OR1P1Q8NH06 330 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 MBD3L1Q8WWY6 194 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 RITA1Q96K30 269 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 PLA2G2EQ9NZK7 142 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 LSM4Q9Y4Z0 139 aaKnown RBP9.34□□□□□ -0.91
USP54-209ENST00000464635 HILPDAQ9Y5L2 63 aa9.34□□□□□ -0.91
USP54-209ENST00000464635 IGHV3-72A0A0B4J1Y9 119 aa9.33□□□□□ -0.92
USP54-209ENST00000464635 IGLC7A0M8Q6 106 aa9.33□□□□□ -0.92
USP54-209ENST00000464635 KRBOX1C9JBD0 128 aa9.33□□□□□ -0.92
USP54-209ENST00000464635 OPRK1P41145 380 aa9.33□□□□□ -0.92
USP54-209ENST00000464635 KRTAP10-3P60369 221 aa9.33□□□□□ -0.92
USP54-209ENST00000464635 RAB2AP61019 212 aa9.33□□□□□ -0.92
USP54-209ENST00000464635 CD69Q07108 199 aa9.33□□□□□ -0.92
USP54-209ENST00000464635 PJVKQ0ZLH3 352 aa9.33□□□□□ -0.92
USP54-209ENST00000464635 MMDQ15546 238 aa9.33□□□□□ -0.92
USP54-209ENST00000464635 TEPPQ6URK8 271 aa9.33□□□□□ -0.92
USP54-209ENST00000464635 TREML4Q6UXN2 200 aa9.33□□□□□ -0.92
USP54-209ENST00000464635 COMMD7Q86VX2 200 aa9.33□□□□□ -0.92
USP54-209ENST00000464635 TMEM86BQ8N661 226 aa9.33□□□□□ -0.92
USP54-209ENST00000464635 ZNF709Q8N972 641 aa9.33□□□□□ -0.92
USP54-209ENST00000464635 SSMEM1Q8WWF3 244 aa9.33□□□□□ -0.92
USP54-209ENST00000464635 FAM210AQ96ND0 272 aa9.33□□□□□ -0.92
USP54-209ENST00000464635 NDUFA7O95182 113 aa9.32□□□□□ -0.92
USP54-209ENST00000464635 HLA-DRB1P01911 266 aa9.32□□□□□ -0.92
USP54-209ENST00000464635 CRYGCP07315 174 aa9.32□□□□□ -0.92
USP54-209ENST00000464635 IER3P46695 156 aa9.32□□□□□ -0.92
USP54-209ENST00000464635 RPL29P47914 159 aaKnown RBP9.32□□□□□ -0.92
USP54-209ENST00000464635 WT1-ASQ06250 92 aa9.32□□□□□ -0.92
USP54-209ENST00000464635 C16orf82Q7Z2V1 217 aa9.32□□□□□ -0.92
USP54-209ENST00000464635 OR4F5Q8NH21 305 aa9.32□□□□□ -0.92
USP54-209ENST00000464635 NPCDR1Q9BY65 106 aa9.32□□□□□ -0.92
USP54-209ENST00000464635 TRRAPQ9Y4A5 3859 aa9.31□□□□□ -0.92
USP54-209ENST00000464635 VWFP04275 2813 aa9.31□□□□□ -0.92
USP54-209ENST00000464635 TEX22C9J3V5 150 aa9.31□□□□□ -0.92
USP54-209ENST00000464635 E7EUB6 86 aa9.31□□□□□ -0.92
USP54-209ENST00000464635 CYB5BO43169 146 aa9.31□□□□□ -0.92
USP54-209ENST00000464635 PRH1P02810 166 aa9.31□□□□□ -0.92
USP54-209ENST00000464635 CRYBA1P05813 215 aa9.31□□□□□ -0.92
USP54-209ENST00000464635 TMEM11P17152 192 aa9.31□□□□□ -0.92
USP54-209ENST00000464635 TAGLN2P37802 199 aaKnown RBP9.31□□□□□ -0.92
USP54-209ENST00000464635 CAMLGP49069 296 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms