RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 FBXO7Q9Y3I1 522 aa7.93□□□□□ -1.14
CD44-207ENST00000425428 ANK3Q12955 4377 aaKnown RBP7.93□□□□□ -1.14
CD44-207ENST00000425428 JMJD1CQ15652 2540 aa7.93□□□□□ -1.14
CD44-207ENST00000425428 BRI3O95415 125 aa7.92□□□□□ -1.14
CD44-207ENST00000425428 RNASE2P10153 161 aaKnown RBP7.92□□□□□ -1.14
CD44-207ENST00000425428 RPL12P30050 165 aaKnown RBP7.92□□□□□ -1.14
CD44-207ENST00000425428 SULT1A1P50225 295 aa7.92□□□□□ -1.14
CD44-207ENST00000425428 SSBP2P81877 361 aaPredicted RBP7.92□□□□□ -1.14
CD44-207ENST00000425428 ATP6V1FQ16864 119 aa7.92□□□□□ -1.14
CD44-207ENST00000425428 OR1S2Q8NGQ3 325 aa7.92□□□□□ -1.14
CD44-207ENST00000425428 CACNG8Q8WXS5 425 aa7.92□□□□□ -1.14
CD44-207ENST00000425428 NIPBLQ6KC79 2804 aaeCLIP7.92□□□□□ -1.14
CD44-207ENST00000425428 TRBV7-1A0A0A6YYK4 115 aa7.92□□□□□ -1.14
CD44-207ENST00000425428 TCRBV4S1A1TA0A5B7 111 aa7.92□□□□□ -1.14
CD44-207ENST00000425428 SMCO3A2RU48 225 aa7.92□□□□□ -1.14
CD44-207ENST00000425428 CGB1A6NKQ9 187 aa7.92□□□□□ -1.14
CD44-207ENST00000425428 OR2J3O76001 311 aa7.92□□□□□ -1.14
CD44-207ENST00000425428 FABP1P07148 127 aa7.92□□□□□ -1.14
CD44-207ENST00000425428 METTL15P1P0C7V9 234 aa7.92□□□□□ -1.14
CD44-207ENST00000425428 MDKP21741 143 aaPredicted RBP7.92□□□□□ -1.14
CD44-207ENST00000425428 GPX4P36969 197 aaPredicted RBP7.92□□□□□ -1.14
CD44-207ENST00000425428 NPBWR1P48145 328 aa7.92□□□□□ -1.14
CD44-207ENST00000425428 RAB9AP51151 201 aa7.92□□□□□ -1.14
CD44-207ENST00000425428 RHOGP84095 191 aa7.92□□□□□ -1.14
CD44-207ENST00000425428 RAB31Q13636 194 aa7.92□□□□□ -1.14
CD44-207ENST00000425428 ACSM6Q6P461 480 aa7.92□□□□□ -1.14
CD44-207ENST00000425428 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.92□□□□□ -1.14
CD44-207ENST00000425428 OR5AC2Q9NZP5 309 aa7.92□□□□□ -1.14
CD44-207ENST00000425428 ZFHX3Q15911 3703 aa7.91□□□□□ -1.14
CD44-207ENST00000425428 FAM24AA6NFZ4 105 aa7.91□□□□□ -1.14
CD44-207ENST00000425428 NUDT19A8MXV4 375 aa7.91□□□□□ -1.14
CD44-207ENST00000425428 ARPC5O15511 151 aa7.91□□□□□ -1.14
CD44-207ENST00000425428 DFFBO76075 338 aa7.91□□□□□ -1.14
CD44-207ENST00000425428 PPIFP30405 207 aaKnown RBP7.91□□□□□ -1.14
CD44-207ENST00000425428 MFAP4P55083 255 aa7.91□□□□□ -1.14
CD44-207ENST00000425428 SRSF2Q01130 221 aaKnown RBP7.91□□□□□ -1.14
CD44-207ENST00000425428 AKR1C1Q04828 323 aa7.91□□□□□ -1.14
CD44-207ENST00000425428 C15orf32Q32M92 178 aa7.91□□□□□ -1.14
CD44-207ENST00000425428 Q56UQ5 140 aa7.91□□□□□ -1.14
CD44-207ENST00000425428 ASPHD1Q5U4P2 390 aa7.91□□□□□ -1.14
CD44-207ENST00000425428 C12orf54Q6X4T0 127 aa7.91□□□□□ -1.14
CD44-207ENST00000425428 ACOT7LQ6ZUV0 252 aa7.91□□□□□ -1.14
CD44-207ENST00000425428 TMEM252Q8N6L7 170 aa7.91□□□□□ -1.14
CD44-207ENST00000425428 VN1R17PQ8TDU5 208 aa7.91□□□□□ -1.14
CD44-207ENST00000425428 GGACTQ9BVM4 153 aa7.91□□□□□ -1.14
CD44-207ENST00000425428 IGLV11-55A0A075B6I3 123 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 TRAV30A0A087WSZ9 112 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 A0A0D9SG52 128 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 A0A1B0GW64 132 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 C15orf62A8K5M9 175 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 HMSDA8MTL9 139 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 GNG7O60262 68 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 CST7O76096 145 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 MT-CO2P00403 227 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 IFNA5P01569 189 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 IGLV1-40P01703 118 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 C1QBP02746 253 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 PRH1P02810 166 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 LYL1P12980 280 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 PSMB8P28062 276 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 SLC38A11Q08AI6 406 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 OR2F1Q13607 317 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 BSXQ3C1V8 233 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 TMEM14EPQ6UXP3 125 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 TMEM217Q8N7C4 229 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 UBAC2Q8NBM4 344 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 ST6GAL2Q96JF0 529 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 TXN2Q99757 166 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 RNF126Q9BV68 326 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 MFFQ9GZY8 342 aa7.9□□□□□ -1.14
CD44-207ENST00000425428 TSSC4Q9Y5U2 329 aaPredicted RBP7.9□□□□□ -1.14
CD44-207ENST00000425428 C2CD3Q4AC94 2353 aa7.9□□□□□ -1.15
CD44-207ENST00000425428 BORCS7-ASMTA0A0B4J1R7 106 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 KANTRA0A1W2PQU2 76 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 TAAR5O14804 337 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 PAX9P55771 341 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 RIPPLY3P57055 190 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 DLK1P80370 383 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 EWSR1Q01844 656 aaKnown RBP eCLIP7.89□□□□□ -1.15
CD44-207ENST00000425428 CFHR3Q02985 330 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 CD69Q07108 199 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 ZNF266Q14584 549 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 C19orf54Q5BKX5 351 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 SLC16A13Q7RTY0 426 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 LURAP1LQ8IV03 231 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 C3orf56Q8N813 242 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 SCGB1C1Q8TD33 95 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 WFDC12Q8WWY7 111 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 UBE2E2Q96LR5 201 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 OR4C12Q96R67 309 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 ATP6V0BQ99437 205 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 C19orf24Q9BVV8 132 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 NPVFQ9HCQ7 196 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 C21orf62Q9NYP8 219 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 HSPB11Q9Y547 144 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 TRAV14DV4A0A0A6YYC5 116 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 TRBV9A0A0B4J1U6 114 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 FNDC10F2Z333 226 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 SMLR1H3BR10 107 aa7.89□□□□□ -1.15
CD44-207ENST00000425428 NUPL2O15504 423 aaKnown RBP7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms