RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 AHRRA9YTQ3 701 aa13.31□□□□□ -0.28
PCDH1-203ENST00000394536 SRRM5B3KS81 715 aa13.31□□□□□ -0.28
PCDH1-203ENST00000394536 TMEM11P17152 192 aa13.31□□□□□ -0.28
PCDH1-203ENST00000394536 ZNF134P52741 427 aa13.31□□□□□ -0.28
PCDH1-203ENST00000394536 TCTAP57738 103 aa13.31□□□□□ -0.28
PCDH1-203ENST00000394536 ARSJQ5FYB0 599 aaPredicted RBP13.31□□□□□ -0.28
PCDH1-203ENST00000394536 COL5A1-AS1Q5SY13 56 aa13.31□□□□□ -0.28
PCDH1-203ENST00000394536 GNB4Q9HAV0 340 aa13.31□□□□□ -0.28
PCDH1-203ENST00000394536 HLA-DQA1P01909 254 aa13.3□□□□□ -0.28
PCDH1-203ENST00000394536 SNRNP40Q96DI7 357 aaKnown RBP13.3□□□□□ -0.28
PCDH1-203ENST00000394536 ZNF71Q9NQZ8 489 aaPredicted RBP13.3□□□□□ -0.28
PCDH1-203ENST00000394536 POLR3KQ9Y2Y1 108 aaPredicted RBP13.3□□□□□ -0.28
PCDH1-203ENST00000394536 NOTCH3Q9UM47 2321 aa13.3□□□□□ -0.28
PCDH1-203ENST00000394536 SPTBN5Q9NRC6 3674 aaKnown RBP13.3□□□□□ -0.28
PCDH1-203ENST00000394536 SIAH2O43255 324 aa13.3□□□□□ -0.28
PCDH1-203ENST00000394536 NUTF2P61970 127 aaKnown RBP13.3□□□□□ -0.28
PCDH1-203ENST00000394536 DUX4L9Q6RFH8 374 aaPredicted RBP13.3□□□□□ -0.28
PCDH1-203ENST00000394536 C5orf30Q96GV9 206 aa13.3□□□□□ -0.28
PCDH1-203ENST00000394536 PARD6GQ9BYG4 376 aaPredicted RBP13.3□□□□□ -0.28
PCDH1-203ENST00000394536 DPRXA6NFQ7 191 aa13.3□□□□□ -0.28
PCDH1-203ENST00000394536 IGKV1-16P04430 117 aa13.3□□□□□ -0.28
PCDH1-203ENST00000394536 LMO1P25800 156 aa13.3□□□□□ -0.28
PCDH1-203ENST00000394536 COL8A1P27658 744 aa13.3□□□□□ -0.28
PCDH1-203ENST00000394536 C2orf88Q9BSF0 95 aa13.3□□□□□ -0.28
PCDH1-203ENST00000394536 SAA1P0DJI8 122 aaPredicted RBP13.29□□□□□ -0.28
PCDH1-203ENST00000394536 GLRXP35754 106 aa13.29□□□□□ -0.28
PCDH1-203ENST00000394536 C1orf194Q5T5A4 169 aa13.29□□□□□ -0.28
PCDH1-203ENST00000394536 DMRTA1Q5VZB9 504 aa13.29□□□□□ -0.28
PCDH1-203ENST00000394536 ST6GALNAC3Q8NDV1 305 aa13.29□□□□□ -0.28
PCDH1-203ENST00000394536 P01737 135 aa13.29□□□□□ -0.28
PCDH1-203ENST00000394536 CDKN1AP38936 164 aa13.29□□□□□ -0.28
PCDH1-203ENST00000394536 TMEM144Q7Z5S9 345 aa13.29□□□□□ -0.28
PCDH1-203ENST00000394536 MRPL20Q9BYC9 149 aaKnown RBP13.29□□□□□ -0.28
PCDH1-203ENST00000394536 COL8A2P25067 703 aa13.29□□□□□ -0.28
PCDH1-203ENST00000394536 OR4B1Q8NGF8 309 aa13.29□□□□□ -0.28
PCDH1-203ENST00000394536 VSTM2AQ8TAG5 236 aa13.29□□□□□ -0.28
PCDH1-203ENST00000394536 RNASEH2CQ8TDP1 164 aaKnown RBP13.29□□□□□ -0.28
PCDH1-203ENST00000394536 CHRDL1Q9BU40 450 aa13.29□□□□□ -0.28
PCDH1-203ENST00000394536 GNG5P63218 68 aa13.28□□□□□ -0.28
PCDH1-203ENST00000394536 ST6GALNAC6Q969X2 333 aa13.28□□□□□ -0.28
PCDH1-203ENST00000394536 ZNF714Q96N38 554 aa13.28□□□□□ -0.28
PCDH1-203ENST00000394536 IFI27L2Q9H2X8 130 aa13.28□□□□□ -0.28
PCDH1-203ENST00000394536 ASCL3Q9NQ33 180 aa13.28□□□□□ -0.28
PCDH1-203ENST00000394536 A0A1W2PN81 502 aa13.28□□□□□ -0.28
PCDH1-203ENST00000394536 HIST1H1EP10412 219 aaKnown RBP13.28□□□□□ -0.28
PCDH1-203ENST00000394536 HTR1DP28221 377 aa13.28□□□□□ -0.28
PCDH1-203ENST00000394536 PGLYRP4Q96LB8 373 aa13.28□□□□□ -0.28
PCDH1-203ENST00000394536 TNFRSF19Q9NS68 423 aa13.28□□□□□ -0.28
PCDH1-203ENST00000394536 BET1LQ9NYM9 111 aa13.28□□□□□ -0.28
PCDH1-203ENST00000394536 AMY1AP04745 511 aa13.28□□□□□ -0.28
PCDH1-203ENST00000394536 MMDQ15546 238 aa13.28□□□□□ -0.28
PCDH1-203ENST00000394536 FAM90A1Q86YD7 464 aa13.28□□□□□ -0.28
PCDH1-203ENST00000394536 C11orf53Q8IXP5 236 aa13.28□□□□□ -0.28
PCDH1-203ENST00000394536 MIEN1Q9BRT3 115 aa13.28□□□□□ -0.28
PCDH1-203ENST00000394536 TRBV20OR9-2A0A075B6H5 130 aa13.27□□□□□ -0.28
PCDH1-203ENST00000394536 TMSB15BA0A087X1C1 80 aa13.27□□□□□ -0.28
PCDH1-203ENST00000394536 F2Z2F3 143 aa13.27□□□□□ -0.28
PCDH1-203ENST00000394536 FTH1P19P0C7X4 201 aa13.27□□□□□ -0.28
PCDH1-203ENST00000394536 COX19Q49B96 90 aa13.27□□□□□ -0.28
PCDH1-203ENST00000394536 LCN12Q6JVE5 192 aa13.27□□□□□ -0.28
PCDH1-203ENST00000394536 BEND2Q8NDZ0 799 aa13.27□□□□□ -0.28
PCDH1-203ENST00000394536 PRR7Q8TB68 274 aa13.27□□□□□ -0.28
PCDH1-203ENST00000394536 ERASQ7Z444 233 aa13.27□□□□□ -0.29
PCDH1-203ENST00000394536 RNF2Q99496 336 aa13.27□□□□□ -0.29
PCDH1-203ENST00000394536 PYGO2Q9BRQ0 406 aa13.27□□□□□ -0.29
PCDH1-203ENST00000394536 DLL1O00548 723 aa13.27□□□□□ -0.29
PCDH1-203ENST00000394536 TDRG1Q3Y452 100 aa13.27□□□□□ -0.29
PCDH1-203ENST00000394536 LEMD1Q68G75 181 aa13.27□□□□□ -0.29
PCDH1-203ENST00000394536 RAB1CQ92928 201 aa13.27□□□□□ -0.29
PCDH1-203ENST00000394536 PPIAL4AQ9Y536 164 aa13.27□□□□□ -0.29
PCDH1-203ENST00000394536 PPIAL4EA0A075B759 164 aa13.26□□□□□ -0.29
PCDH1-203ENST00000394536 PPIAL4DF5H284 164 aa13.26□□□□□ -0.29
PCDH1-203ENST00000394536 IGKV3-15P01624 115 aa13.26□□□□□ -0.29
PCDH1-203ENST00000394536 PPIAL4FP0DN26 164 aa13.26□□□□□ -0.29
PCDH1-203ENST00000394536 LINC00305Q7Z4B0 112 aa13.26□□□□□ -0.29
PCDH1-203ENST00000394536 UQCR10Q9UDW1 63 aa13.26□□□□□ -0.29
PCDH1-203ENST00000394536 FRMD6-AS1P0C7T7 363 aa13.26□□□□□ -0.29
PCDH1-203ENST00000394536 ZNF883P0CG24 379 aa13.26□□□□□ -0.29
PCDH1-203ENST00000394536 CEP192Q8TEP8 1941 aa13.26□□□□□ -0.29
PCDH1-203ENST00000394536 ZNF430Q9H8G1 570 aaPredicted RBP13.26□□□□□ -0.29
PCDH1-203ENST00000394536 MKRN2OSH3BPM6 223 aa13.26□□□□□ -0.29
PCDH1-203ENST00000394536 UPK2O00526 184 aa13.26□□□□□ -0.29
PCDH1-203ENST00000394536 CT45A10P0DMU9 189 aa13.26□□□□□ -0.29
PCDH1-203ENST00000394536 INSIG2Q9Y5U4 225 aa13.26□□□□□ -0.29
PCDH1-203ENST00000394536 TLN1Q9Y490 2541 aaKnown RBP13.26□□□□□ -0.29
PCDH1-203ENST00000394536 A0A1W2PNU3 283 aaPredicted RBP13.25□□□□□ -0.29
PCDH1-203ENST00000394536 PMS2P5A8MQ11 134 aa13.25□□□□□ -0.29
PCDH1-203ENST00000394536 PCP4P48539 62 aa13.25□□□□□ -0.29
PCDH1-203ENST00000394536 PRNTQ86SH4 94 aa13.25□□□□□ -0.29
PCDH1-203ENST00000394536 OR4C5Q8NGB2 326 aa13.25□□□□□ -0.29
PCDH1-203ENST00000394536 OR8B2Q96RD0 313 aa13.25□□□□□ -0.29
PCDH1-203ENST00000394536 NGBQ9NPG2 151 aa13.25□□□□□ -0.29
PCDH1-203ENST00000394536 BRWD1-AS2P59051 145 aa13.25□□□□□ -0.29
PCDH1-203ENST00000394536 GFRALQ6UXV0 394 aa13.25□□□□□ -0.29
PCDH1-203ENST00000394536 Q6ZWC4 215 aa13.25□□□□□ -0.29
PCDH1-203ENST00000394536 CENPVQ7Z7K6 275 aaPredicted RBP13.25□□□□□ -0.29
PCDH1-203ENST00000394536 RPEQ96AT9 228 aa13.25□□□□□ -0.29
PCDH1-203ENST00000394536 OTOGLQ3ZCN5 2332 aa13.25□□□□□ -0.29
PCDH1-203ENST00000394536 FRYQ5TBA9 3013 aa13.25□□□□□ -0.29
PCDH1-203ENST00000394536 TYMSP04818 313 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms