RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 RNASEH2CQ8TDP1 164 aaKnown RBP10.6□□□□□ -0.71
VPS13A-204ENST00000376634 TRBV5-5A0A0J9YX44 114 aa10.6□□□□□ -0.71
VPS13A-204ENST00000376634 VDAC2P45880 294 aaPredicted RBP10.6□□□□□ -0.71
VPS13A-204ENST00000376634 TBR1Q16650 682 aa10.6□□□□□ -0.71
VPS13A-204ENST00000376634 LINC00518Q8N0U6 118 aa10.6□□□□□ -0.71
VPS13A-204ENST00000376634 ZNF501Q96CX3 271 aaPredicted RBP10.6□□□□□ -0.71
VPS13A-204ENST00000376634 SRSF6Q13247 344 aaKnown RBP10.6□□□□□ -0.71
VPS13A-204ENST00000376634 ZFAND6Q6FIF0 208 aa10.6□□□□□ -0.71
VPS13A-204ENST00000376634 SLC22A18ASQ8N1D0 253 aa10.6□□□□□ -0.71
VPS13A-204ENST00000376634 MYOD1P15172 320 aa10.6□□□□□ -0.71
VPS13A-204ENST00000376634 GPR183P32249 361 aa10.6□□□□□ -0.71
VPS13A-204ENST00000376634 SRSF4Q08170 494 aaKnown RBP10.6□□□□□ -0.71
VPS13A-204ENST00000376634 BHLHA9Q7RTU4 235 aa10.6□□□□□ -0.71
VPS13A-204ENST00000376634 FOXD3Q9UJU5 478 aaPredicted RBP10.6□□□□□ -0.71
VPS13A-204ENST00000376634 A0A1W2PRX2 142 aa10.6□□□□□ -0.71
VPS13A-204ENST00000376634 SLC25A15Q9Y619 301 aa10.6□□□□□ -0.71
VPS13A-204ENST00000376634 IGKV1D-33P01593 117 aa10.6□□□□□ -0.71
VPS13A-204ENST00000376634 IGKV1-33P01594 117 aa10.6□□□□□ -0.71
VPS13A-204ENST00000376634 KCNK17Q96T54 332 aa10.6□□□□□ -0.71
VPS13A-204ENST00000376634 YAE1D1Q9NRH1 226 aa10.6□□□□□ -0.71
VPS13A-204ENST00000376634 FOXS1O43638 330 aa10.6□□□□□ -0.71
VPS13A-204ENST00000376634 RPL39P5Q59GN2 51 aa10.6□□□□□ -0.71
VPS13A-204ENST00000376634 C1orf162Q8NEQ5 155 aaPredicted RBP10.59□□□□□ -0.71
VPS13A-204ENST00000376634 C5orf67F2Z3F1 127 aa10.59□□□□□ -0.71
VPS13A-204ENST00000376634 IFI27P40305 119 aaPredicted RBP10.59□□□□□ -0.71
VPS13A-204ENST00000376634 TMEM249Q2WGJ8 235 aa10.59□□□□□ -0.71
VPS13A-204ENST00000376634 ZNF562Q6V9R5 426 aa10.59□□□□□ -0.71
VPS13A-204ENST00000376634 NPIPB3Q92617 1050 aa10.59□□□□□ -0.71
VPS13A-204ENST00000376634 MS4A6AQ9H2W1 248 aa10.59□□□□□ -0.71
VPS13A-204ENST00000376634 BSPH1Q075Z2 132 aa10.59□□□□□ -0.71
VPS13A-204ENST00000376634 SLC25A47Q6Q0C1 308 aa10.59□□□□□ -0.71
VPS13A-204ENST00000376634 ST6GALNAC6Q969X2 333 aa10.59□□□□□ -0.71
VPS13A-204ENST00000376634 SIGMAR1Q99720 223 aa10.59□□□□□ -0.71
VPS13A-204ENST00000376634 FBXL7Q9UJT9 491 aa10.59□□□□□ -0.71
VPS13A-204ENST00000376634 FAM89BQ8N5H3 189 aa10.59□□□□□ -0.71
VPS13A-204ENST00000376634 TEX45Q8NA69 505 aa10.59□□□□□ -0.71
VPS13A-204ENST00000376634 TMEM167AQ8TBQ9 72 aa10.59□□□□□ -0.71
VPS13A-204ENST00000376634 TMEM86BQ8N661 226 aa10.59□□□□□ -0.71
VPS13A-204ENST00000376634 MRPS18AQ9NVS2 196 aaKnown RBP10.59□□□□□ -0.71
VPS13A-204ENST00000376634 HIGD1CA8MV81 97 aa10.59□□□□□ -0.71
VPS13A-204ENST00000376634 LIMS1P48059 325 aa10.59□□□□□ -0.71
VPS13A-204ENST00000376634 STHQ8IWL8 128 aa10.59□□□□□ -0.71
VPS13A-204ENST00000376634 MGST2Q99735 147 aa10.59□□□□□ -0.71
VPS13A-204ENST00000376634 RPRMQ9NS64 109 aa10.59□□□□□ -0.71
VPS13A-204ENST00000376634 IGHMP01871 453 aa10.58□□□□□ -0.72
VPS13A-204ENST00000376634 GATAD1Q8WUU5 269 aa10.58□□□□□ -0.72
VPS13A-204ENST00000376634 OR5P3Q8WZ94 311 aa10.58□□□□□ -0.72
VPS13A-204ENST00000376634 C2orf68Q2NKX9 166 aa10.58□□□□□ -0.72
VPS13A-204ENST00000376634 LDLRAD2Q5SZI1 272 aa10.58□□□□□ -0.72
VPS13A-204ENST00000376634 Q6ZT83 130 aa10.58□□□□□ -0.72
VPS13A-204ENST00000376634 FAM57AQ8TBR7 257 aa10.58□□□□□ -0.72
VPS13A-204ENST00000376634 SEPSECSQ9HD40 501 aaKnown RBP10.58□□□□□ -0.72
VPS13A-204ENST00000376634 ACACBO00763 2458 aa10.58□□□□□ -0.72
VPS13A-204ENST00000376634 MEGF9Q9H1U4 602 aa10.58□□□□□ -0.72
VPS13A-204ENST00000376634 CYSLTR1Q9Y271 337 aa10.58□□□□□ -0.72
VPS13A-204ENST00000376634 ACP7Q6ZNF0 438 aa10.58□□□□□ -0.72
VPS13A-204ENST00000376634 SNAI2O43623 268 aa10.58□□□□□ -0.72
VPS13A-204ENST00000376634 FHITP49789 147 aa10.58□□□□□ -0.72
VPS13A-204ENST00000376634 ZNF585BQ52M93 769 aa10.58□□□□□ -0.72
VPS13A-204ENST00000376634 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.58□□□□□ -0.72
VPS13A-204ENST00000376634 CACNA1AO00555 2505 aa10.58□□□□□ -0.72
VPS13A-204ENST00000376634 PQLC2LA1A4F0 135 aa10.58□□□□□ -0.72
VPS13A-204ENST00000376634 SRXN1Q9BYN0 137 aa10.58□□□□□ -0.72
VPS13A-204ENST00000376634 CD7P09564 240 aa10.58□□□□□ -0.72
VPS13A-204ENST00000376634 C21orf62Q9NYP8 219 aa10.58□□□□□ -0.72
VPS13A-204ENST00000376634 NOTCH4Q99466 2003 aa10.58□□□□□ -0.72
VPS13A-204ENST00000376634 RCC1LQ96I51 464 aaKnown RBP10.58□□□□□ -0.72
VPS13A-204ENST00000376634 PRR32B1ATL7 298 aa10.57□□□□□ -0.72
VPS13A-204ENST00000376634 NBEAP1P0C6P0 100 aa10.57□□□□□ -0.72
VPS13A-204ENST00000376634 APOBEC3AP31941 199 aaPredicted RBP10.57□□□□□ -0.72
VPS13A-204ENST00000376634 FUT5Q11128 374 aa10.57□□□□□ -0.72
VPS13A-204ENST00000376634 C5orf30Q96GV9 206 aa10.57□□□□□ -0.72
VPS13A-204ENST00000376634 IGKV3D-20A0A0C4DH25 116 aa10.57□□□□□ -0.72
VPS13A-204ENST00000376634 IL6RP08887 468 aaPredicted RBP10.57□□□□□ -0.72
VPS13A-204ENST00000376634 FER1L6-AS1Q8NA97 138 aa10.57□□□□□ -0.72
VPS13A-204ENST00000376634 ALPK3Q96L96 1907 aa10.57□□□□□ -0.72
VPS13A-204ENST00000376634 CENPVL1A0A0U1RR11 272 aa10.57□□□□□ -0.72
VPS13A-204ENST00000376634 FOXA3P55318 350 aaPredicted RBP10.57□□□□□ -0.72
VPS13A-204ENST00000376634 C1QTNF12Q5T7M4 302 aa10.57□□□□□ -0.72
VPS13A-204ENST00000376634 PPP1R27Q86WC6 154 aa10.57□□□□□ -0.72
VPS13A-204ENST00000376634 TMEM52Q8NDY8 209 aa10.57□□□□□ -0.72
VPS13A-204ENST00000376634 HOXA3O43365 443 aaPredicted RBP10.57□□□□□ -0.72
VPS13A-204ENST00000376634 S100A7L2Q5SY68 101 aa10.57□□□□□ -0.72
VPS13A-204ENST00000376634 NUP210LQ5VU65 1888 aa10.57□□□□□ -0.72
VPS13A-204ENST00000376634 PROB1E7EW31 1015 aa10.57□□□□□ -0.72
VPS13A-204ENST00000376634 COX6A1P12074 109 aa10.57□□□□□ -0.72
VPS13A-204ENST00000376634 TRBV5-3A0A0A0MS03 114 aa10.57□□□□□ -0.72
VPS13A-204ENST00000376634 IGKV1-8A0A0C4DH67 115 aa10.57□□□□□ -0.72
VPS13A-204ENST00000376634 DRAM1Q8N682 238 aa10.57□□□□□ -0.72
VPS13A-204ENST00000376634 FNDC4Q9H6D8 234 aaPredicted RBP10.57□□□□□ -0.72
VPS13A-204ENST00000376634 ZIC3O60481 467 aa10.56□□□□□ -0.72
VPS13A-204ENST00000376634 RIPPLY3P57055 190 aa10.56□□□□□ -0.72
VPS13A-204ENST00000376634 DTX1Q86Y01 620 aa10.56□□□□□ -0.72
VPS13A-204ENST00000376634 APCDD1LQ8NCL9 501 aa10.56□□□□□ -0.72
VPS13A-204ENST00000376634 GPR132Q9UNW8 380 aa10.56□□□□□ -0.72
VPS13A-204ENST00000376634 Q9H3A6 140 aa10.56□□□□□ -0.72
VPS13A-204ENST00000376634 MPTX1A8MV57 137 aa10.56□□□□□ -0.72
VPS13A-204ENST00000376634 CST9LQ9H4G1 147 aa10.56□□□□□ -0.72
VPS13A-204ENST00000376634 ZNRF1Q8ND25 227 aa10.56□□□□□ -0.72
VPS13A-204ENST00000376634 COX5BP10606 129 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms