RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 KRTAP1-3Q8IUG1 177 aa12.32□□□□□ -0.44
LIMS1-202ENST00000338045 FAM213BQ8TBF2 198 aa12.32□□□□□ -0.44
LIMS1-202ENST00000338045 SRSF12Q8WXF0 261 aaKnown RBP12.32□□□□□ -0.44
LIMS1-202ENST00000338045 P2RX4Q99571 388 aa12.32□□□□□ -0.44
LIMS1-202ENST00000338045 NPVFQ9HCQ7 196 aa12.32□□□□□ -0.44
LIMS1-202ENST00000338045 APCP25054 2843 aa12.32□□□□□ -0.44
LIMS1-202ENST00000338045 I3L521 148 aa12.31□□□□□ -0.44
LIMS1-202ENST00000338045 SUB1P53999 127 aaKnown RBP eCLIP12.31□□□□□ -0.445e-7■■■■■ 33
LIMS1-202ENST00000338045 ZNF616Q08AN1 781 aa12.31□□□□□ -0.44
LIMS1-202ENST00000338045 RUSC1-AS1Q66K80 236 aa12.31□□□□□ -0.44
LIMS1-202ENST00000338045 RNASEH2CQ8TDP1 164 aaKnown RBP12.31□□□□□ -0.44
LIMS1-202ENST00000338045 GPR61Q9BZJ8 451 aa12.31□□□□□ -0.44
LIMS1-202ENST00000338045 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.31□□□□□ -0.44
LIMS1-202ENST00000338045 GNB1P62873 340 aa12.31□□□□□ -0.44
LIMS1-202ENST00000338045 CACNG8Q8WXS5 425 aa12.31□□□□□ -0.44
LIMS1-202ENST00000338045 RPRMQ9NS64 109 aa12.31□□□□□ -0.44
LIMS1-202ENST00000338045 SMCO3A2RU48 225 aa12.3□□□□□ -0.44
LIMS1-202ENST00000338045 RNF223E7ERA6 249 aa12.3□□□□□ -0.44
LIMS1-202ENST00000338045 IGHV4-38-2P0DP08 117 aa12.3□□□□□ -0.44
LIMS1-202ENST00000338045 AREGP15514 252 aa12.3□□□□□ -0.44
LIMS1-202ENST00000338045 CD69Q07108 199 aa12.3□□□□□ -0.44
LIMS1-202ENST00000338045 FAM120AOSQ5T036 256 aa12.3□□□□□ -0.44
LIMS1-202ENST00000338045 UQCC3Q6UW78 93 aa12.3□□□□□ -0.44
LIMS1-202ENST00000338045 MEGF9Q9H1U4 602 aa12.3□□□□□ -0.44
LIMS1-202ENST00000338045 VSIRQ9H7M9 311 aa12.3□□□□□ -0.44
LIMS1-202ENST00000338045 GSN-AS1Q9NRJ2 163 aa12.3□□□□□ -0.44
LIMS1-202ENST00000338045 SVEP1Q4LDE5 3571 aa12.3□□□□□ -0.44
LIMS1-202ENST00000338045 IGHV3OR16-10A0A075B7F0 116 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 C17orf112F2Z3M2 114 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 J3QLI3 93 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 SOX15O60248 233 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 AVPP01185 164 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 GPX4P36969 197 aaPredicted RBP12.29□□□□□ -0.44
LIMS1-202ENST00000338045 TMEM41BQ5BJD5 291 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 ACSM6Q6P461 480 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 ZNF562Q6V9R5 426 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 ZNF709Q8N972 641 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 NAV3Q8IVL0 2385 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 TSPAN15O95858 294 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 RPL35P42766 123 aaKnown RBP12.29□□□□□ -0.44
LIMS1-202ENST00000338045 AKR1D1P51857 326 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 KLF17Q5JT82 389 aaPredicted RBP12.29□□□□□ -0.44
LIMS1-202ENST00000338045 SPSB3Q6PJ21 355 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 TEPPQ6URK8 271 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 BRD3OSQ6XYD6 125 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 TMEM144Q7Z5S9 345 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 COMMD1Q8N668 190 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 Q8N9W7 124 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 MGST2Q99735 147 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 GGTLC1Q9BX51 225 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 C1RLQ9NZP8 487 aa12.29□□□□□ -0.44
LIMS1-202ENST00000338045 NCBP2LA6PVI3 153 aaKnown RBP12.28□□□□□ -0.44
LIMS1-202ENST00000338045 MBP02144 154 aa12.28□□□□□ -0.44
LIMS1-202ENST00000338045 REG1AP05451 166 aa12.28□□□□□ -0.44
LIMS1-202ENST00000338045 H2AFB1P0C5Y9 115 aa12.28□□□□□ -0.44
LIMS1-202ENST00000338045 ZP3P21754 424 aa12.28□□□□□ -0.44
LIMS1-202ENST00000338045 OPRK1P41145 380 aa12.28□□□□□ -0.44
LIMS1-202ENST00000338045 GAMTQ14353 236 aa12.28□□□□□ -0.44
LIMS1-202ENST00000338045 FXYD3Q14802 87 aa12.28□□□□□ -0.44
LIMS1-202ENST00000338045 CLRN3Q8NCR9 226 aa12.28□□□□□ -0.44
LIMS1-202ENST00000338045 OR1P1Q8NH06 330 aa12.28□□□□□ -0.44
LIMS1-202ENST00000338045 Q96MF0 132 aa12.28□□□□□ -0.44
LIMS1-202ENST00000338045 OR51M1Q9H341 326 aa12.28□□□□□ -0.44
LIMS1-202ENST00000338045 TRAV1-1A0A0B4J248 108 aa12.27□□□□□ -0.44
LIMS1-202ENST00000338045 A0A0U1RQK1 487 aa12.27□□□□□ -0.44
LIMS1-202ENST00000338045 CNIH1O95406 144 aa12.27□□□□□ -0.44
LIMS1-202ENST00000338045 IGHV4-31P0DP07 118 aa12.27□□□□□ -0.44
LIMS1-202ENST00000338045 MFAP2P55001 183 aa12.27□□□□□ -0.44
LIMS1-202ENST00000338045 ELLP55199 621 aaPredicted RBP12.27□□□□□ -0.44
LIMS1-202ENST00000338045 AKR1C1Q04828 323 aa12.27□□□□□ -0.44
LIMS1-202ENST00000338045 ZNF726P1Q15940 193 aa12.27□□□□□ -0.44
LIMS1-202ENST00000338045 MLANAQ16655 118 aa12.27□□□□□ -0.44
LIMS1-202ENST00000338045 SLC16A13Q7RTY0 426 aa12.27□□□□□ -0.44
LIMS1-202ENST00000338045 LFNGQ8NES3 379 aa12.27□□□□□ -0.44
LIMS1-202ENST00000338045 SSMEM1Q8WWF3 244 aa12.27□□□□□ -0.44
LIMS1-202ENST00000338045 MBD3L1Q8WWY6 194 aa12.27□□□□□ -0.44
LIMS1-202ENST00000338045 FNDC4Q9H6D8 234 aaPredicted RBP12.27□□□□□ -0.44
LIMS1-202ENST00000338045 F11RQ9Y624 299 aaKnown RBP12.27□□□□□ -0.44
LIMS1-202ENST00000338045 BTBD17A6NE02 478 aa12.27□□□□□ -0.45
LIMS1-202ENST00000338045 CX3CL1P78423 397 aa12.27□□□□□ -0.45
LIMS1-202ENST00000338045 TMEM249Q2WGJ8 235 aa12.27□□□□□ -0.45
LIMS1-202ENST00000338045 FFAR4Q5NUL3 377 aa12.27□□□□□ -0.45
LIMS1-202ENST00000338045 SAPCD1Q5SSQ6 148 aa12.27□□□□□ -0.45
LIMS1-202ENST00000338045 RPP25LQ8N5L8 163 aaKnown RBP12.27□□□□□ -0.45
LIMS1-202ENST00000338045 MAPK1IP1LQ8NDC0 245 aa12.27□□□□□ -0.45
LIMS1-202ENST00000338045 PIFOQ8TCI5 191 aa12.27□□□□□ -0.45
LIMS1-202ENST00000338045 RCC1LQ96I51 464 aaKnown RBP12.27□□□□□ -0.45
LIMS1-202ENST00000338045 MAP1AP78559 2803 aaPredicted RBP12.27□□□□□ -0.45
LIMS1-202ENST00000338045 NBPF19A0A087WUL8 3843 aa12.26□□□□□ -0.45
LIMS1-202ENST00000338045 CR1P17927 2039 aa12.26□□□□□ -0.45
LIMS1-202ENST00000338045 AGPAT2O15120 278 aa12.26□□□□□ -0.45
LIMS1-202ENST00000338045 TGFAP01135 160 aa12.26□□□□□ -0.45
LIMS1-202ENST00000338045 HLA-DRB1P01911 266 aa12.26□□□□□ -0.45
LIMS1-202ENST00000338045 CRYGCP07315 174 aa12.26□□□□□ -0.45
LIMS1-202ENST00000338045 RAB2AP61019 212 aa12.26□□□□□ -0.45
LIMS1-202ENST00000338045 SCRT1Q9BWW7 348 aa12.26□□□□□ -0.45
LIMS1-202ENST00000338045 KCNIP2Q9NS61 270 aa12.26□□□□□ -0.45
LIMS1-202ENST00000338045 IGKV1OR2-108A0A075B7D4 117 aa12.25□□□□□ -0.45
LIMS1-202ENST00000338045 KRBOX1C9JBD0 128 aa12.25□□□□□ -0.45
LIMS1-202ENST00000338045 CORTO00230 105 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms