RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 IGKV1D-33P01593 117 aa5.65□□□□□ -1.5
SF3B1-201ENST00000335508 IGKV1-33P01594 117 aa5.65□□□□□ -1.5
SF3B1-201ENST00000335508 MSMBP08118 114 aa5.65□□□□□ -1.5
SF3B1-201ENST00000335508 HERPUD1Q15011 391 aa5.65□□□□□ -1.5
SF3B1-201ENST00000335508 ZNF562Q6V9R5 426 aa5.65□□□□□ -1.5
SF3B1-201ENST00000335508 TMEM208Q9BTX3 173 aa5.65□□□□□ -1.5
SF3B1-201ENST00000335508 CHEK1O14757 476 aa5.65□□□□□ -1.5
SF3B1-201ENST00000335508 CD5P06127 495 aa5.65□□□□□ -1.5
SF3B1-201ENST00000335508 KIAA0141Q14154 515 aaPredicted RBP5.65□□□□□ -1.5
SF3B1-201ENST00000335508 SAPCD1Q5SSQ6 148 aa5.65□□□□□ -1.5
SF3B1-201ENST00000335508 NECAP1Q8NC96 275 aa5.65□□□□□ -1.5
SF3B1-201ENST00000335508 RSG1Q9BU20 258 aa5.65□□□□□ -1.5
SF3B1-201ENST00000335508 COL4A3Q01955 1670 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 PAGE4O60829 102 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 HSBP1O75506 76 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 CCKARP32238 428 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 ERVFC1-1P60608 527 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 MIC13Q5XKP0 118 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 MOB4Q9Y3A3 225 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 ZNF503-AS2A6NEH8 195 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 COL8A1P27658 744 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 RPL29P47914 159 aaKnown RBP5.65□□□□□ -1.51
SF3B1-201ENST00000335508 SPINK9Q5DT21 86 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 TMEM200BQ69YZ2 307 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 SPNS3Q6ZMD2 512 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 FNDC10F2Z333 226 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 H0YIZ8 118 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 DLX6P56179 175 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 CX3CL1P78423 397 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 ZNF880Q6PDB4 577 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 KIR3DL3Q8N743 410 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 ZNF525Q8N782 197 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 OR1B1Q8NGR6 318 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 HIST1H2BAQ96A08 127 aa5.65□□□□□ -1.51
SF3B1-201ENST00000335508 RRHO14718 337 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 C1QL1O75973 258 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 OR4D5Q8NGN0 318 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 DOK5Q9P104 306 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 FBXL7Q9UJT9 491 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 SFTA3P0C7M3 94 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 KRTAP27-1Q3LI81 207 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 TMEM78Q5T7P6 136 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 SPSB3Q6PJ21 355 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 EIF4E3Q8N5X7 224 aaKnown RBP5.64□□□□□ -1.51
SF3B1-201ENST00000335508 CLRN3Q8NCR9 226 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 ITLN2Q8WWU7 325 aaPredicted RBP5.64□□□□□ -1.51
SF3B1-201ENST00000335508 C7orf77A4D0Y5 90 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 FGF16O43320 207 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 VENTXO95231 258 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 TRGV3P03979 118 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 TPTE2P1Q5T6R2 138 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 AP1S3Q96PC3 154 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 RABAC1Q9UI14 185 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 FUT9Q9Y231 359 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 IL4P05112 153 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 ATP5G2Q06055 141 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 FABP9Q0Z7S8 132 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 CYP2G1PQ6ZSU1 146 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 CLDND2Q8NHS1 167 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 RNF166Q96A37 237 aaPredicted RBP5.64□□□□□ -1.51
SF3B1-201ENST00000335508 A0A0C4DFX4 3053 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 TRAV40A0A0B4J280 105 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 A0A1W2PRE2 83 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 IGKV1-5P01602 117 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 NBEAP1P0C6P0 100 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 Q5BKY6 102 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 PRR27Q6MZM9 219 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 BAGE3Q86Y29 109 aa5.64□□□□□ -1.51
SF3B1-201ENST00000335508 IGKV1-6A0A0C4DH72 117 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 TSPOP30536 169 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 DYNLRB2Q8TF09 96 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 BEX4Q9NWD9 120 aaPredicted RBP5.63□□□□□ -1.51
SF3B1-201ENST00000335508 URGCP-MRPS24S4R325 110 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 IGHV1-3A0A0C4DH29 117 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 G3V3Q6 166 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 RPEL1Q2QD12 228 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 C16orf82Q7Z2V1 217 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 CENPVQ7Z7K6 275 aaPredicted RBP5.63□□□□□ -1.51
SF3B1-201ENST00000335508 FOXA2Q9Y261 457 aaPredicted RBP5.63□□□□□ -1.51
SF3B1-201ENST00000335508 OBSL1O75147 1896 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 TRAV1-1A0A0B4J248 108 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 CXorf65A6NEN9 183 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 COL8A2P25067 703 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 OR5I1Q13606 314 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 TPPP3Q9BW30 176 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 DSCAMO60469 2012 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 A4D1N5 150 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 HSBP1L1C9JCN9 74 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 PLAUP00749 431 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 WDR86Q86TI4 376 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 NPCDR1Q9BY65 106 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 SHISA9B4DS77 424 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 NPFFO15130 113 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 RANP62826 216 aaKnown RBP5.63□□□□□ -1.51
SF3B1-201ENST00000335508 RELBQ01201 579 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 RNF144BQ7Z419 303 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 LINC01356Q8N9X3 169 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 C18orf12Q96KH6 178 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 RNF126Q9BV68 326 aa5.63□□□□□ -1.51
SF3B1-201ENST00000335508 ZNF106Q9H2Y7 1883 aaKnown RBP5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms