RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 CTF1Q16619 201 aa10.33□□□□□ -0.76
CLN3-249ENST00000636685 Q5VSD8 79 aa10.33□□□□□ -0.76
CLN3-249ENST00000636685 H1FOOQ8IZA3 346 aaPredicted RBP10.33□□□□□ -0.76
CLN3-249ENST00000636685 ZNF485Q8NCK3 441 aa10.33□□□□□ -0.76
CLN3-249ENST00000636685 OR4S2Q8NH73 311 aa10.33□□□□□ -0.76
CLN3-249ENST00000636685 S100ZQ8WXG8 99 aa10.33□□□□□ -0.76
CLN3-249ENST00000636685 RNF167Q9H6Y7 350 aa10.33□□□□□ -0.76
CLN3-249ENST00000636685 C21orf62Q9NYP8 219 aa10.33□□□□□ -0.76
CLN3-249ENST00000636685 KNCNA6PVL3 124 aa10.32□□□□□ -0.76
CLN3-249ENST00000636685 YIF1AO95070 293 aa10.32□□□□□ -0.76
CLN3-249ENST00000636685 FCGR3AP08637 254 aa10.32□□□□□ -0.76
CLN3-249ENST00000636685 MYL12AP19105 171 aa10.32□□□□□ -0.76
CLN3-249ENST00000636685 SLC25A24Q6NUK1 477 aa10.32□□□□□ -0.76
CLN3-249ENST00000636685 LILRB2Q8N423 598 aa10.32□□□□□ -0.76
CLN3-249ENST00000636685 OR10W1Q8NGF6 305 aa10.32□□□□□ -0.76
CLN3-249ENST00000636685 TMEM80Q96HE8 168 aa10.32□□□□□ -0.76
CLN3-249ENST00000636685 RBMX2Q9Y388 322 aaKnown RBP10.32□□□□□ -0.76
CLN3-249ENST00000636685 TRAV14DV4A0A0A6YYC5 116 aa10.31□□□□□ -0.76
CLN3-249ENST00000636685 DIRAS3O95661 229 aa10.31□□□□□ -0.76
CLN3-249ENST00000636685 ZNF846Q147U1 533 aa10.31□□□□□ -0.76
CLN3-249ENST00000636685 SPCS2Q15005 226 aa10.31□□□□□ -0.76
CLN3-249ENST00000636685 TIMM50Q3ZCQ8 353 aa10.31□□□□□ -0.76
CLN3-249ENST00000636685 Q56UQ5 140 aa10.31□□□□□ -0.76
CLN3-249ENST00000636685 SCARB1Q8WTV0 552 aa10.31□□□□□ -0.76
CLN3-249ENST00000636685 TCTEX1D2Q8WW35 142 aa10.31□□□□□ -0.76
CLN3-249ENST00000636685 DIMT1Q9UNQ2 313 aaKnown RBP10.31□□□□□ -0.76
CLN3-249ENST00000636685 KCNK7Q9Y2U2 307 aa10.31□□□□□ -0.76
CLN3-249ENST00000636685 TRAV3A0A0B4J244 114 aa10.3□□□□□ -0.76
CLN3-249ENST00000636685 IGLV2-14P01704 120 aa10.3□□□□□ -0.76
CLN3-249ENST00000636685 CTSGP08311 255 aa10.3□□□□□ -0.76
CLN3-249ENST00000636685 HTN3P15516 51 aa10.3□□□□□ -0.76
CLN3-249ENST00000636685 MAPK3P27361 379 aaPredicted RBP10.3□□□□□ -0.76
CLN3-249ENST00000636685 EMP1P54849 157 aa10.3□□□□□ -0.76
CLN3-249ENST00000636685 TAS2R43P59537 309 aa10.3□□□□□ -0.76
CLN3-249ENST00000636685 MRPS15P82914 257 aaKnown RBP10.3□□□□□ -0.76
CLN3-249ENST00000636685 LYPD1Q8N2G4 141 aa10.3□□□□□ -0.76
CLN3-249ENST00000636685 GDPD1Q8N9F7 314 aa10.3□□□□□ -0.76
CLN3-249ENST00000636685 ST8SIA2Q92186 375 aa10.3□□□□□ -0.76
CLN3-249ENST00000636685 OR10C1Q96KK4 312 aa10.3□□□□□ -0.76
CLN3-249ENST00000636685 HRASLSQ9HDD0 168 aa10.3□□□□□ -0.76
CLN3-249ENST00000636685 TMED3Q9Y3Q3 217 aa10.3□□□□□ -0.76
CLN3-249ENST00000636685 IGHV3-66A0A0C4DH42 116 aa10.29□□□□□ -0.76
CLN3-249ENST00000636685 ST8SIA3O43173 380 aa10.29□□□□□ -0.76
CLN3-249ENST00000636685 HRASP01112 189 aa10.29□□□□□ -0.76
CLN3-249ENST00000636685 APOHP02749 345 aaPredicted RBP10.29□□□□□ -0.76
CLN3-249ENST00000636685 SPART-AS1P0CW21 52 aa10.29□□□□□ -0.76
CLN3-249ENST00000636685 FAM3BP58499 235 aaPredicted RBP10.29□□□□□ -0.76
CLN3-249ENST00000636685 RPL11P62913 178 aaKnown RBP10.29□□□□□ -0.76
CLN3-249ENST00000636685 TMEM88Q6PEY1 159 aa10.29□□□□□ -0.76
CLN3-249ENST00000636685 ZNF66Q6ZN08 573 aa10.29□□□□□ -0.76
CLN3-249ENST00000636685 DYNC2LI1Q8TCX1 351 aa10.29□□□□□ -0.76
CLN3-249ENST00000636685 GPHA2Q96T91 129 aa10.29□□□□□ -0.76
CLN3-249ENST00000636685 ATP6V0BQ99437 205 aa10.29□□□□□ -0.76
CLN3-249ENST00000636685 WDR12Q9GZL7 423 aaKnown RBP10.29□□□□□ -0.76
CLN3-249ENST00000636685 BET1LQ9NYM9 111 aa10.29□□□□□ -0.76
CLN3-249ENST00000636685 RABAC1Q9UI14 185 aa10.29□□□□□ -0.76
CLN3-249ENST00000636685 SPATA2Q9UM82 520 aa10.29□□□□□ -0.76
CLN3-249ENST00000636685 IGKV1D-8A0A087WSZ0 117 aa10.28□□□□□ -0.76
CLN3-249ENST00000636685 TRAV2A0A0B4J234 112 aa10.28□□□□□ -0.76
CLN3-249ENST00000636685 J3QL48 77 aa10.28□□□□□ -0.76
CLN3-249ENST00000636685 K7EIM0 57 aa10.28□□□□□ -0.76
CLN3-249ENST00000636685 CYB5BO43169 146 aa10.28□□□□□ -0.76
CLN3-249ENST00000636685 OR13C7P0DN81 318 aa10.28□□□□□ -0.76
CLN3-249ENST00000636685 CD37P11049 281 aa10.28□□□□□ -0.76
CLN3-249ENST00000636685 RELQ04864 619 aaPredicted RBP10.28□□□□□ -0.76
CLN3-249ENST00000636685 EIF4EBP1Q13541 118 aaPredicted RBP10.28□□□□□ -0.76
CLN3-249ENST00000636685 ACSM3Q53FZ2 586 aa10.28□□□□□ -0.76
CLN3-249ENST00000636685 ACTL10Q5JWF8 245 aa10.28□□□□□ -0.76
CLN3-249ENST00000636685 MFSD4AQ8N468 514 aa10.28□□□□□ -0.76
CLN3-249ENST00000636685 NANOGP1Q8N7R0 232 aa10.28□□□□□ -0.76
CLN3-249ENST00000636685 MGLLQ99685 303 aa10.28□□□□□ -0.76
CLN3-249ENST00000636685 SRSF8Q9BRL6 282 aaKnown RBP10.28□□□□□ -0.76
CLN3-249ENST00000636685 MND1Q9BWT6 205 aa10.28□□□□□ -0.76
CLN3-249ENST00000636685 IGKV1D-13A0A0B4J2D9 117 aa10.27□□□□□ -0.77
CLN3-249ENST00000636685 CD1AP06126 327 aa10.27□□□□□ -0.77
CLN3-249ENST00000636685 EIF4EP06730 217 aaKnown RBP10.27□□□□□ -0.77
CLN3-249ENST00000636685 SERPINE2P07093 398 aa10.27□□□□□ -0.77
CLN3-249ENST00000636685 IGKV1-13P0DP09 117 aa10.27□□□□□ -0.77
CLN3-249ENST00000636685 XGP55808 180 aa10.27□□□□□ -0.77
CLN3-249ENST00000636685 VBP1P61758 197 aa10.27□□□□□ -0.77
CLN3-249ENST00000636685 WT1-ASQ06250 92 aa10.27□□□□□ -0.77
CLN3-249ENST00000636685 DUSP18Q8NEJ0 188 aa10.27□□□□□ -0.77
CLN3-249ENST00000636685 OR56B1Q8NGI3 324 aa10.27□□□□□ -0.77
CLN3-249ENST00000636685 ZNRF2Q8NHG8 242 aa10.27□□□□□ -0.77
CLN3-249ENST00000636685 PHYHIPQ92561 330 aa10.27□□□□□ -0.77
CLN3-249ENST00000636685 FRZBQ92765 325 aa10.27□□□□□ -0.77
CLN3-249ENST00000636685 HSD17B10Q99714 261 aaKnown RBP10.27□□□□□ -0.77
CLN3-249ENST00000636685 ATG101Q9BSB4 218 aa10.27□□□□□ -0.77
CLN3-249ENST00000636685 QTRT1Q9BXR0 403 aaKnown RBP10.27□□□□□ -0.77
CLN3-249ENST00000636685 COMMD5Q9GZQ3 224 aa10.27□□□□□ -0.77
CLN3-249ENST00000636685 VSIRQ9H7M9 311 aa10.27□□□□□ -0.77
CLN3-249ENST00000636685 TAS2R8Q9NYW2 309 aa10.27□□□□□ -0.77
CLN3-249ENST00000636685 UPK2O00526 184 aa10.26□□□□□ -0.77
CLN3-249ENST00000636685 HLA-DQB1P01920 261 aa10.26□□□□□ -0.77
CLN3-249ENST00000636685 CD5P06127 495 aa10.26□□□□□ -0.77
CLN3-249ENST00000636685 ZNF688P0C7X2 276 aa10.26□□□□□ -0.77
CLN3-249ENST00000636685 NFYAP23511 347 aaPredicted RBP10.26□□□□□ -0.77
CLN3-249ENST00000636685 GADD45AP24522 165 aa10.26□□□□□ -0.77
CLN3-249ENST00000636685 LSM3P62310 102 aaKnown RBP10.26□□□□□ -0.77
CLN3-249ENST00000636685 PPP1R14BQ96C90 147 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms