RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 RNASE2P10153 161 aaKnown RBP11.59□□□□□ -0.55
LIMS3-206ENST00000631420 LYL1P12980 280 aa11.59□□□□□ -0.55
LIMS3-206ENST00000631420 CTRB1P17538 263 aa11.59□□□□□ -0.55
LIMS3-206ENST00000631420 CRIP2P52943 208 aaPredicted RBP11.59□□□□□ -0.55
LIMS3-206ENST00000631420 AKIRIN2Q53H80 203 aa11.59□□□□□ -0.55
LIMS3-206ENST00000631420 CTRB2Q6GPI1 263 aa11.59□□□□□ -0.55
LIMS3-206ENST00000631420 STPG2Q8N412 459 aa11.59□□□□□ -0.55
LIMS3-206ENST00000631420 TTC9CQ8N5M4 171 aa11.59□□□□□ -0.55
LIMS3-206ENST00000631420 DCUN1D4Q92564 292 aa11.59□□□□□ -0.55
LIMS3-206ENST00000631420 CIB3Q96Q77 187 aaPredicted RBP11.59□□□□□ -0.55
LIMS3-206ENST00000631420 WNT10AQ9GZT5 417 aa11.59□□□□□ -0.55
LIMS3-206ENST00000631420 DMRT1Q9Y5R6 373 aa11.59□□□□□ -0.55
LIMS3-206ENST00000631420 NF1P21359 2839 aa11.59□□□□□ -0.55
LIMS3-206ENST00000631420 FXYD6-FXYD2A0A087WZ82 144 aa11.58□□□□□ -0.55
LIMS3-206ENST00000631420 C15orf62A8K5M9 175 aa11.58□□□□□ -0.55
LIMS3-206ENST00000631420 SOX15O60248 233 aa11.58□□□□□ -0.55
LIMS3-206ENST00000631420 IFNA10P01566 189 aa11.58□□□□□ -0.55
LIMS3-206ENST00000631420 CRYGCP07315 174 aa11.58□□□□□ -0.55
LIMS3-206ENST00000631420 SLC25A4P12235 298 aa11.58□□□□□ -0.55
LIMS3-206ENST00000631420 PVALBP20472 110 aaPredicted RBP11.58□□□□□ -0.55
LIMS3-206ENST00000631420 SNCAP37840 140 aa11.58□□□□□ -0.55
LIMS3-206ENST00000631420 MFAP2P55001 183 aa11.58□□□□□ -0.55
LIMS3-206ENST00000631420 RPL15P61313 204 aaKnown RBP11.58□□□□□ -0.55
LIMS3-206ENST00000631420 TMEM267Q0VDI3 215 aaPredicted RBP11.58□□□□□ -0.55
LIMS3-206ENST00000631420 BSXQ3C1V8 233 aa11.58□□□□□ -0.55
LIMS3-206ENST00000631420 C10orf99Q6UWK7 81 aa11.58□□□□□ -0.55
LIMS3-206ENST00000631420 PAIP2BQ9ULR5 123 aaKnown RBP11.58□□□□□ -0.55
LIMS3-206ENST00000631420 U3KQ87 197 aa11.58□□□□□ -0.55
LIMS3-206ENST00000631420 NPIPB5A8MRT5 1133 aa11.58□□□□□ -0.56
LIMS3-206ENST00000631420 FBXO24O75426 580 aa11.58□□□□□ -0.56
LIMS3-206ENST00000631420 PET100P0DJ07 73 aa11.58□□□□□ -0.56
LIMS3-206ENST00000631420 PPIFP30405 207 aaKnown RBP11.58□□□□□ -0.56
LIMS3-206ENST00000631420 HTR2BP41595 481 aa11.58□□□□□ -0.56
LIMS3-206ENST00000631420 CAV2P51636 162 aa11.58□□□□□ -0.56
LIMS3-206ENST00000631420 TAS2R30P59541 319 aa11.58□□□□□ -0.56
LIMS3-206ENST00000631420 RPL23AP62750 156 aaKnown RBP11.58□□□□□ -0.56
LIMS3-206ENST00000631420 HSD17B13Q7Z5P4 300 aaPredicted RBP11.58□□□□□ -0.56
LIMS3-206ENST00000631420 ZNF329Q86UD4 541 aa11.58□□□□□ -0.56
LIMS3-206ENST00000631420 SLC24A4Q8NFF2 622 aa11.58□□□□□ -0.56
LIMS3-206ENST00000631420 OR2T6Q8NHC8 308 aa11.58□□□□□ -0.56
LIMS3-206ENST00000631420 FAM110DQ8TAY7 271 aaPredicted RBP11.58□□□□□ -0.56
LIMS3-206ENST00000631420 IGSF23A1L1A6 192 aa11.57□□□□□ -0.56
LIMS3-206ENST00000631420 TSC22D2O75157 780 aa11.57□□□□□ -0.56
LIMS3-206ENST00000631420 C1QBP02746 253 aa11.57□□□□□ -0.56
LIMS3-206ENST00000631420 P2RY1P47900 373 aa11.57□□□□□ -0.56
LIMS3-206ENST00000631420 CFHR3Q02985 330 aa11.57□□□□□ -0.56
LIMS3-206ENST00000631420 ZNF546Q86UE3 836 aa11.57□□□□□ -0.56
LIMS3-206ENST00000631420 TMEM252Q8N6L7 170 aa11.57□□□□□ -0.56
LIMS3-206ENST00000631420 LINC01006Q8NI28 216 aa11.57□□□□□ -0.56
LIMS3-206ENST00000631420 TMEM68Q96MH6 324 aa11.57□□□□□ -0.56
LIMS3-206ENST00000631420 C16orf95Q9H693 158 aa11.57□□□□□ -0.56
LIMS3-206ENST00000631420 LYRM2Q9NU23 88 aaPredicted RBP11.57□□□□□ -0.56
LIMS3-206ENST00000631420 STRAPQ9Y3F4 350 aaKnown RBP11.57□□□□□ -0.56
LIMS3-206ENST00000631420 F11RQ9Y624 299 aaKnown RBP11.57□□□□□ -0.56
LIMS3-206ENST00000631420 METTL15P1P0C7V9 234 aa11.56□□□□□ -0.56
LIMS3-206ENST00000631420 HKR1P10072 659 aa11.56□□□□□ -0.56
LIMS3-206ENST00000631420 DEFA4P12838 97 aa11.56□□□□□ -0.56
LIMS3-206ENST00000631420 NPY1RP25929 384 aa11.56□□□□□ -0.56
LIMS3-206ENST00000631420 ARL16Q0P5N6 197 aa11.56□□□□□ -0.56
LIMS3-206ENST00000631420 MLANAQ16655 118 aa11.56□□□□□ -0.56
LIMS3-206ENST00000631420 C2orf83Q53S99 150 aa11.56□□□□□ -0.56
LIMS3-206ENST00000631420 SLC25A24Q6NUK1 477 aa11.56□□□□□ -0.56
LIMS3-206ENST00000631420 TMEM14EPQ6UXP3 125 aa11.56□□□□□ -0.56
LIMS3-206ENST00000631420 PRIMA1Q86XR5 153 aa11.56□□□□□ -0.56
LIMS3-206ENST00000631420 MRPL41Q8IXM3 137 aaKnown RBP11.56□□□□□ -0.56
LIMS3-206ENST00000631420 ZNF114Q8NC26 417 aa11.56□□□□□ -0.56
LIMS3-206ENST00000631420 BSCL2Q96G97 398 aaPredicted RBP11.56□□□□□ -0.56
LIMS3-206ENST00000631420 MS4A10Q96PG2 267 aa11.56□□□□□ -0.56
LIMS3-206ENST00000631420 FANCD2OSQ96PS1 177 aa11.56□□□□□ -0.56
LIMS3-206ENST00000631420 ZNF355PQ9NSJ1 428 aa11.56□□□□□ -0.56
LIMS3-206ENST00000631420 PMS2P5A8MQ11 134 aa11.55□□□□□ -0.56
LIMS3-206ENST00000631420 CST7O76096 145 aa11.55□□□□□ -0.56
LIMS3-206ENST00000631420 LY86O95711 162 aa11.55□□□□□ -0.56
LIMS3-206ENST00000631420 DEFA5Q01523 94 aa11.55□□□□□ -0.56
LIMS3-206ENST00000631420 NHLH2Q02577 135 aa11.55□□□□□ -0.56
LIMS3-206ENST00000631420 HAPLN4Q86UW8 402 aa11.55□□□□□ -0.56
LIMS3-206ENST00000631420 OR1P1Q8NH06 330 aa11.55□□□□□ -0.56
LIMS3-206ENST00000631420 ZNF580Q9UK33 172 aa11.55□□□□□ -0.56
LIMS3-206ENST00000631420 TNFSF18Q9UNG2 199 aa11.55□□□□□ -0.56
LIMS3-206ENST00000631420 JMJD1CQ15652 2540 aa11.55□□□□□ -0.56
LIMS3-206ENST00000631420 RNF222A6NCQ9 220 aa11.54□□□□□ -0.56
LIMS3-206ENST00000631420 ARPC5O15511 151 aa11.54□□□□□ -0.56
LIMS3-206ENST00000631420 NDUFA7O95182 113 aa11.54□□□□□ -0.56
LIMS3-206ENST00000631420 IFNA4P05014 189 aa11.54□□□□□ -0.56
LIMS3-206ENST00000631420 OR8U8P0C7N1 319 aa11.54□□□□□ -0.56
LIMS3-206ENST00000631420 RPL12P30050 165 aaKnown RBP11.54□□□□□ -0.56
LIMS3-206ENST00000631420 SUB1P53999 127 aaKnown RBP eCLIP11.54□□□□□ -0.56
LIMS3-206ENST00000631420 RPP30P78346 268 aaKnown RBP11.54□□□□□ -0.56
LIMS3-206ENST00000631420 EWSR1Q01844 656 aaKnown RBP eCLIP11.54□□□□□ -0.56
LIMS3-206ENST00000631420 ZFP69Q49AA0 526 aa11.54□□□□□ -0.56
LIMS3-206ENST00000631420 PVRIGQ6DKI7 326 aa11.54□□□□□ -0.56
LIMS3-206ENST00000631420 TMEM65Q6PI78 240 aa11.54□□□□□ -0.56
LIMS3-206ENST00000631420 ETV3LQ6ZN32 361 aa11.54□□□□□ -0.56
LIMS3-206ENST00000631420 LCNL1Q6ZST4 164 aa11.54□□□□□ -0.56
LIMS3-206ENST00000631420 CENPVQ7Z7K6 275 aaPredicted RBP11.54□□□□□ -0.56
LIMS3-206ENST00000631420 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.54□□□□□ -0.56
LIMS3-206ENST00000631420 MISP3Q96FF7 219 aa11.54□□□□□ -0.56
LIMS3-206ENST00000631420 KLK15Q9H2R5 256 aa11.54□□□□□ -0.56
LIMS3-206ENST00000631420 IGLV11-55A0A075B6I3 123 aa11.54□□□□□ -0.56
LIMS3-206ENST00000631420 IGHV3-21A0A0B4J1V1 117 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms