RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 WT1-ASQ06250 92 aa6.33□□□□□ -1.4
CPNE3-209ENST00000620393 TMEM267Q0VDI3 215 aaPredicted RBP6.33□□□□□ -1.4
CPNE3-209ENST00000620393 ZFP69Q49AA0 526 aa6.33□□□□□ -1.4
CPNE3-209ENST00000620393 C9orf152Q5JTZ5 239 aa6.33□□□□□ -1.4
CPNE3-209ENST00000620393 Q6ZS46 218 aa6.33□□□□□ -1.4
CPNE3-209ENST00000620393 NOXA1Q86UR1 476 aa6.33□□□□□ -1.4
CPNE3-209ENST00000620393 TMEM252Q8N6L7 170 aa6.33□□□□□ -1.4
CPNE3-209ENST00000620393 SGMS2Q8NHU3 365 aa6.33□□□□□ -1.4
CPNE3-209ENST00000620393 GRPEL2Q8TAA5 225 aa6.33□□□□□ -1.4
CPNE3-209ENST00000620393 DCUN1D4Q92564 292 aa6.33□□□□□ -1.4
CPNE3-209ENST00000620393 FAM103A1Q9BTL3 118 aaKnown RBP6.33□□□□□ -1.4
CPNE3-209ENST00000620393 PRSS22Q9GZN4 317 aa6.33□□□□□ -1.4
CPNE3-209ENST00000620393 NPFFR1Q9GZQ6 430 aa6.33□□□□□ -1.4
CPNE3-209ENST00000620393 FXYD6-FXYD2A0A087WZ82 144 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 ADARB2-AS1A8MUL3 147 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 TRIM77I1YAP6 450 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 IFNA10P01566 189 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 IGF1P05019 195 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 CRYGCP07315 174 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 RNASE1P07998 156 aaKnown RBP6.32□□□□□ -1.4
CPNE3-209ENST00000620393 HKR1P10072 659 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 AREGP15514 252 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 RPL12P30050 165 aaKnown RBP6.32□□□□□ -1.4
CPNE3-209ENST00000620393 NUP62P37198 522 aaPredicted RBP6.32□□□□□ -1.4
CPNE3-209ENST00000620393 SNCAP37840 140 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 HTR2BP41595 481 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 CRIP2P52943 208 aaPredicted RBP6.32□□□□□ -1.4
CPNE3-209ENST00000620393 SUB1P53999 127 aaKnown RBP eCLIP6.32□□□□□ -1.4
CPNE3-209ENST00000620393 RPL15P61313 204 aaKnown RBP6.32□□□□□ -1.4
CPNE3-209ENST00000620393 UBA52P62987 128 aaKnown RBP6.32□□□□□ -1.4
CPNE3-209ENST00000620393 BSXQ3C1V8 233 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 AKIRIN2Q53H80 203 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 SPANXN5Q5MJ07 72 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 ASPHD1Q5U4P2 390 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 TMEM14EPQ6UXP3 125 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 ACOT7LQ6ZUV0 252 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 SLC35E3Q7Z769 313 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 Q8N2B8 174 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 TTC9CQ8N5M4 171 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 INO80EQ8NBZ0 244 aaPredicted RBP6.32□□□□□ -1.4
CPNE3-209ENST00000620393 LFNGQ8NES3 379 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 ABHD5Q8WTS1 349 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 WNT10AQ9GZT5 417 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 SLC25A31Q9H0C2 315 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 PARP11Q9NR21 331 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 LYRM2Q9NU23 88 aaPredicted RBP6.32□□□□□ -1.4
CPNE3-209ENST00000620393 ZNF580Q9UK33 172 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 TNFSF18Q9UNG2 199 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 STRAPQ9Y3F4 350 aaKnown RBP6.32□□□□□ -1.4
CPNE3-209ENST00000620393 FBXO7Q9Y3I1 522 aa6.32□□□□□ -1.4
CPNE3-209ENST00000620393 F8P00451 2351 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 C15orf62A8K5M9 175 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 PMS2P5A8MQ11 134 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 NPIPB5A8MRT5 1133 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 H3BP45 60 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 AP4M1O00189 453 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 ATP6V0E1O15342 81 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 TCF21O43680 179 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 TSPAN9O75954 239 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 HNRNPCP07910 306 aaKnown RBP eCLIP6.31□□□□□ -1.4
CPNE3-209ENST00000620393 APELAP0DMC3 54 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 RNASE2P10153 161 aaKnown RBP6.31□□□□□ -1.4
CPNE3-209ENST00000620393 CTRB1P17538 263 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 CAV2P51636 162 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 RAB11AP62491 216 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 OR2F1Q13607 317 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 LGALSLQ3ZCW2 172 aaPredicted RBP6.31□□□□□ -1.4
CPNE3-209ENST00000620393 C2orf83Q53S99 150 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 PVRIGQ6DKI7 326 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 CTRB2Q6GPI1 263 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 UNQ5815/PRO19632Q6UWF5 114 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 ZNF114Q8NC26 417 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 SLC24A4Q8NFF2 622 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 OR5T1Q8NG75 326 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 OR1P1Q8NH06 330 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 TMEM170AQ8WVE7 144 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 AQP10Q96PS8 301 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 OR4C12Q96R67 309 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 P2RX4Q99571 388 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 MFFQ9GZY8 342 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 ZNF702PQ9H963 129 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 F11RQ9Y624 299 aaKnown RBP6.31□□□□□ -1.4
CPNE3-209ENST00000620393 TNCP24821 2201 aa6.31□□□□□ -1.4
CPNE3-209ENST00000620393 MXRA5Q9NR99 2828 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 TRAV41A0A0B4J266 112 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 A0A0D9SG52 128 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 IGSF23A1L1A6 192 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 RNF222A6NCQ9 220 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 G3V318 75 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 BOLA2-SMG1P6H3BVE0 249 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 ARPC5O15511 151 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 FBXO24O75426 580 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 IFNA4P05014 189 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 REG1AP05451 166 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 CRYBA1P05813 215 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 METTL15P1P0C7V9 234 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 CXCL2P19875 107 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 NPY1RP25929 384 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 PPIFP30405 207 aaKnown RBP6.3□□□□□ -1.4
CPNE3-209ENST00000620393 SULT1A1P50225 295 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms