RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 STAG3L2P0CL84 134 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 STAG3L3P0CL85 134 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 CSN1S1P47710 185 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 SELENOTP62341 195 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 TMEM144Q7Z5S9 345 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 KLHDC1Q8N7A1 406 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 STXBP6Q8NFX7 210 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 OSR1Q8TAX0 266 aaPredicted RBP7.18□□□□□ -1.26
LIG4-204ENST00000611712 MGST2Q99735 147 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 MRPL20Q9BYC9 149 aaKnown RBP7.18□□□□□ -1.26
LIG4-204ENST00000611712 IL36BQ9NZH7 164 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 INTS1Q8N201 2190 aaKnown RBP7.18□□□□□ -1.26
LIG4-204ENST00000611712 MED12LQ86YW9 2145 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 A0A1W2PNU3 283 aaPredicted RBP7.18□□□□□ -1.26
LIG4-204ENST00000611712 FAM90A9PA6NNJ1 464 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 UPK2O00526 184 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 TM4SF5O14894 197 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 PPIHO43447 177 aaKnown RBP7.18□□□□□ -1.26
LIG4-204ENST00000611712 SAA1P0DJI8 122 aaPredicted RBP7.18□□□□□ -1.26
LIG4-204ENST00000611712 MYOD1P15172 320 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 MC5RP33032 325 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 RELBQ01201 579 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 TMEM30BQ3MIR4 351 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 OR2D3Q8NGH3 330 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 SEPSECSQ9HD40 501 aaKnown RBP7.18□□□□□ -1.26
LIG4-204ENST00000611712 TNFRSF19Q9NS68 423 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 CEP192Q8TEP8 1941 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 A0A1B0GV90 55 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 IGHV1-46P01743 117 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 SPATA31B1PQ5VZV4 182 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 C19orf24Q9BVV8 132 aa7.18□□□□□ -1.26
LIG4-204ENST00000611712 SSBP3Q9BWW4 388 aaPredicted RBP7.18□□□□□ -1.26
LIG4-204ENST00000611712 PGPA6NDG6 321 aa7.17□□□□□ -1.26
LIG4-204ENST00000611712 NCBP2LA6PVI3 153 aaKnown RBP7.17□□□□□ -1.26
LIG4-204ENST00000611712 TCAPO15273 167 aa7.17□□□□□ -1.26
LIG4-204ENST00000611712 HYPMO75409 117 aa7.17□□□□□ -1.26
LIG4-204ENST00000611712 HIST1H1EP10412 219 aaKnown RBP7.17□□□□□ -1.26
LIG4-204ENST00000611712 CD99P14209 185 aa7.17□□□□□ -1.26
LIG4-204ENST00000611712 HNRNPA3P51991 378 aaKnown RBP7.17□□□□□ -1.26
LIG4-204ENST00000611712 JOSD1Q15040 202 aaPredicted RBP7.17□□□□□ -1.26
LIG4-204ENST00000611712 AP1S3Q96PC3 154 aa7.17□□□□□ -1.26
LIG4-204ENST00000611712 MED13LQ71F56 2210 aa7.17□□□□□ -1.26
LIG4-204ENST00000611712 DIRC3C9JPN6 131 aa7.17□□□□□ -1.26
LIG4-204ENST00000611712 P01737 135 aa7.17□□□□□ -1.26
LIG4-204ENST00000611712 PFN1P07737 140 aaKnown RBP7.17□□□□□ -1.26
LIG4-204ENST00000611712 ATP5IP56385 69 aaPredicted RBP7.17□□□□□ -1.26
LIG4-204ENST00000611712 FAM162BQ5T6X4 162 aa7.17□□□□□ -1.26
LIG4-204ENST00000611712 TEX38Q6PEX7 206 aa7.17□□□□□ -1.26
LIG4-204ENST00000611712 OR4F17Q8NGA8 305 aa7.17□□□□□ -1.26
LIG4-204ENST00000611712 TMEM186Q96B77 213 aa7.17□□□□□ -1.26
LIG4-204ENST00000611712 SPRY4Q9C004 299 aa7.17□□□□□ -1.26
LIG4-204ENST00000611712 C11orf1Q9H5F2 150 aa7.17□□□□□ -1.26
LIG4-204ENST00000611712 CBLN4Q9NTU7 201 aa7.17□□□□□ -1.26
LIG4-204ENST00000611712 ARL2-SNX15V9GYD0 113 aa7.17□□□□□ -1.26
LIG4-204ENST00000611712 OR9G1Q8NH87 305 aa7.17□□□□□ -1.26
LIG4-204ENST00000611712 LINC00312Q9Y6C7 94 aa7.17□□□□□ -1.26
LIG4-204ENST00000611712 SERTM2A0A1B0GWG4 89 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 COL6A6A6NMZ7 2263 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 H3BTX0 84 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 M0R2Z0 102 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 HLA-DQA1P01909 254 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 COL8A1P27658 744 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 SRIP30626 198 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 AKAP6Q13023 2319 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 RASL11BQ9BPW5 248 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 YLPM1P49750 1951 aaKnown RBP7.16□□□□□ -1.26
LIG4-204ENST00000611712 C17orf100A8MU93 164 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 BSPH1Q075Z2 132 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 PLA2G2CQ5R387 149 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 ZNF474Q6S9Z5 364 aaPredicted RBP7.16□□□□□ -1.26
LIG4-204ENST00000611712 OR10W1Q8NGF6 305 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 OR2T6Q8NHC8 308 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 TMEM106BQ9NUM4 274 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 RPUSD1Q9UJJ7 312 aaKnown RBP7.16□□□□□ -1.26
LIG4-204ENST00000611712 MOSP00540 346 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 PRCDQ00LT1 54 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 MMDQ15546 238 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 FAM57AQ8TBR7 257 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 EAF1Q96JC9 268 aaPredicted RBP7.16□□□□□ -1.26
LIG4-204ENST00000611712 MRPL32Q9BYC8 188 aaKnown RBP7.16□□□□□ -1.26
LIG4-204ENST00000611712 RNASE7Q9H1E1 156 aaKnown RBP7.16□□□□□ -1.26
LIG4-204ENST00000611712 FOXH1O75593 365 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 ADMP35318 185 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 TIMP3P35625 211 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 C11orf53Q8IXP5 236 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 RAB1CQ92928 201 aa7.16□□□□□ -1.26
LIG4-204ENST00000611712 ARHGAP21Q5T5U3 1957 aa7.15□□□□□ -1.26
LIG4-204ENST00000611712 TRANK1O15050 2925 aa7.15□□□□□ -1.26
LIG4-204ENST00000611712 ZNF137PP52743 207 aa7.15□□□□□ -1.26
LIG4-204ENST00000611712 Q56UQ5 140 aa7.15□□□□□ -1.26
LIG4-204ENST00000611712 Q6ZN92 141 aa7.15□□□□□ -1.26
LIG4-204ENST00000611712 OR5R1Q8NH85 324 aa7.15□□□□□ -1.26
LIG4-204ENST00000611712 SCRT1Q9BWW7 348 aa7.15□□□□□ -1.26
LIG4-204ENST00000611712 FOXA2Q9Y261 457 aaPredicted RBP7.15□□□□□ -1.26
LIG4-204ENST00000611712 MBD3L4A6NDZ8 208 aaPredicted RBP7.15□□□□□ -1.26
LIG4-204ENST00000611712 MBD3L3A6NE82 208 aaPredicted RBP7.15□□□□□ -1.26
LIG4-204ENST00000611712 MBD3L5A6NJ08 208 aaPredicted RBP7.15□□□□□ -1.26
LIG4-204ENST00000611712 GGCTO75223 188 aaKnown RBP7.15□□□□□ -1.26
LIG4-204ENST00000611712 CSN3P07498 182 aa7.15□□□□□ -1.26
LIG4-204ENST00000611712 HTR1DP28221 377 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms