RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 RELQ04864 619 aaPredicted RBP4.66□□□□□ -1.66
CUX1-220ENST00000607092 INSL4Q14641 139 aa4.66□□□□□ -1.66
CUX1-220ENST00000607092 C10orf55Q5SWW7 151 aa4.66□□□□□ -1.66
CUX1-220ENST00000607092 C22orf42Q6IC83 251 aa4.66□□□□□ -1.66
CUX1-220ENST00000607092 TMEM91Q6ZNR0 172 aa4.66□□□□□ -1.66
CUX1-220ENST00000607092 GDPD1Q8N9F7 314 aa4.66□□□□□ -1.66
CUX1-220ENST00000607092 QTRT1Q9BXR0 403 aaKnown RBP4.66□□□□□ -1.66
CUX1-220ENST00000607092 HRH4Q9H3N8 390 aa4.66□□□□□ -1.66
CUX1-220ENST00000607092 KCNK15Q9H427 330 aa4.66□□□□□ -1.66
CUX1-220ENST00000607092 RNF167Q9H6Y7 350 aa4.66□□□□□ -1.66
CUX1-220ENST00000607092 HRASLSQ9HDD0 168 aa4.66□□□□□ -1.66
CUX1-220ENST00000607092 IFITM5A6NNB3 132 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 J3QRK9 145 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 NUPL2O15504 423 aaKnown RBP4.65□□□□□ -1.67
CUX1-220ENST00000607092 SCGB2A1O75556 95 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 UPK1BO75841 260 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 DFFBO76075 338 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 EIF4EP06730 217 aaKnown RBP4.65□□□□□ -1.67
CUX1-220ENST00000607092 MED14OSP0DP75 135 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 AREGP15514 252 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 GNB3P16520 340 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 TGFBR1P36897 503 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 CLDN12P56749 244 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 DEFA1P59665 94 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 DEFA3P59666 94 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 GNG2P59768 71 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 OR2B8PP59922 312 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 ERVK-16P61578 105 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 TMEM187Q14656 261 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 OXA1LQ15070 435 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 POU2AF1Q16633 256 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 ODF3L2Q3SX64 289 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 OR2B11Q5JQS5 317 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 HACD4Q5VWC8 232 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 UNQ9165/PRO28630Q6UXU0 137 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 SPAG16Q8N0X2 631 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 CADM3Q8N126 398 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 OR1L8Q8NGR8 309 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 LSM10Q969L4 123 aaKnown RBP4.65□□□□□ -1.67
CUX1-220ENST00000607092 C5orf30Q96GV9 206 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 CYYR1Q96J86 154 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 TMEM56Q96MV1 263 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 SOSTQ9BQB4 213 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 GINS3Q9BRX5 216 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 TMEM231Q9H6L2 316 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 FKBP11Q9NYL4 201 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 C21orf62Q9NYP8 219 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 COMMD9Q9P000 198 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 SPATA2Q9UM82 520 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 KCNK7Q9Y2U2 307 aa4.65□□□□□ -1.67
CUX1-220ENST00000607092 TRAV2A0A0B4J234 112 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 IGLC7A0M8Q6 106 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 FABP12A6NFH5 140 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 MFSD2BA6NFX1 497 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 NOTOA8MTQ0 251 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 RGS5O15539 181 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 DEDDO75618 318 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 IGHV3-23P01764 117 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 APOA1P02647 267 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 TRAPPC2P0DI81 140 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 TRAPPC2BP0DI82 140 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 RPL35AP18077 110 aaKnown RBP4.64□□□□□ -1.67
CUX1-220ENST00000607092 RAB3BP20337 219 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 NFYAP23511 347 aaPredicted RBP4.64□□□□□ -1.67
CUX1-220ENST00000607092 SCAND1P57086 179 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 RPL30P62888 115 aaKnown RBP4.64□□□□□ -1.67
CUX1-220ENST00000607092 MXD1Q05195 221 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 TRIM16LQ309B1 348 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 CDNFQ49AH0 187 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 HES5Q5TA89 166 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 SSX9Q7RTT3 188 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 LYSMD2Q8IV50 215 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 VKORC1L1Q8N0U8 176 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 GVQW1Q8N7I0 195 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 OR11H2Q8NH07 326 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 DIRAS2Q96HU8 199 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 GFI1Q99684 422 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 TXN2Q99757 166 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 C20orf24Q9BUV8 137 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 ATG5Q9H1Y0 275 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 CDIP1Q9H305 208 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 PLEKHA2Q9HB19 425 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 TAS2R8Q9NYW2 309 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 FBXL17Q9UF56 701 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 UBQLN2Q9UHD9 624 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 SMPXQ9UHP9 88 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 ANXA10Q9UJ72 324 aa4.64□□□□□ -1.67
CUX1-220ENST00000607092 A0A0A6YYH2 397 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 TRAV10A0A0B4J240 114 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 IGHV7-4-1A0A0J9YVY3 117 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 OR2T8A6NH00 312 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 A6NJ64 397 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 UPK2O00526 184 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 SNAPC5O75971 98 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 YIF1AO95070 293 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 PTTG1O95997 202 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 CA1P00915 261 aaPredicted RBP4.63□□□□□ -1.67
CUX1-220ENST00000607092 SERPINE2P07093 398 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 CTSDP07339 412 aaPredicted RBP4.63□□□□□ -1.67
CUX1-220ENST00000607092 CLEC2LP0C7M8 214 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms