RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 CD3DP04234 171 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 CTSDP07339 412 aaPredicted RBP7.97□□□□□ -1.13
LIG3-212ENST00000590181 FOLR2P14207 255 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 PGAM2P15259 253 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 G6PCP35575 357 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 PIGPP57054 158 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 DHODHQ02127 395 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 DEFB114Q30KQ6 69 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 PHLDA2Q53GA4 152 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 SLC25A24Q6NUK1 477 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 PLET1Q6UQ28 207 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 CLEC19AQ6UXS0 136 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 Q8N1Y9 231 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 DYNLRB2Q8TF09 96 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 RRNAD1Q96FB5 475 aaKnown RBP7.97□□□□□ -1.13
LIG3-212ENST00000590181 NAA50Q9GZZ1 169 aaKnown RBP7.97□□□□□ -1.13
LIG3-212ENST00000590181 C19orf73Q9NVV2 129 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 SCP2D1Q9UJQ7 156 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 C14orf166Q9Y224 244 aaKnown RBP7.97□□□□□ -1.13
LIG3-212ENST00000590181 TRAV3A0A0B4J244 114 aa7.96□□□□□ -1.14
LIG3-212ENST00000590181 C3orf85A0A1B0GTC6 90 aa7.96□□□□□ -1.14
LIG3-212ENST00000590181 ZNF701M0R085 212 aaPredicted RBP7.96□□□□□ -1.14
LIG3-212ENST00000590181 NDUFA4O00483 81 aa7.96□□□□□ -1.14
LIG3-212ENST00000590181 OR2C1O95371 312 aa7.96□□□□□ -1.14
LIG3-212ENST00000590181 TRBV12-3P01733 135 aa7.96□□□□□ -1.14
LIG3-212ENST00000590181 FRMD6-AS1P0C7T7 363 aa7.96□□□□□ -1.14
LIG3-212ENST00000590181 AKAIN1P0CW23 69 aa7.96□□□□□ -1.14
LIG3-212ENST00000590181 C8orf88P0DMB2 117 aa7.96□□□□□ -1.14
LIG3-212ENST00000590181 CBLN1P23435 193 aa7.96□□□□□ -1.14
LIG3-212ENST00000590181 CMC4P56277 68 aaPredicted RBP7.96□□□□□ -1.14
LIG3-212ENST00000590181 AP3S2P59780 193 aa7.96□□□□□ -1.14
LIG3-212ENST00000590181 PRCDQ00LT1 54 aa7.96□□□□□ -1.14
LIG3-212ENST00000590181 RELQ04864 619 aaPredicted RBP7.96□□□□□ -1.14
LIG3-212ENST00000590181 WT1-ASQ06250 92 aa7.96□□□□□ -1.14
LIG3-212ENST00000590181 ZFAND6Q6FIF0 208 aa7.96□□□□□ -1.14
LIG3-212ENST00000590181 SLC16A13Q7RTY0 426 aa7.96□□□□□ -1.14
LIG3-212ENST00000590181 CCDC140Q96MF4 163 aa7.96□□□□□ -1.14
LIG3-212ENST00000590181 THAP7Q9BT49 309 aaPredicted RBP7.96□□□□□ -1.14
LIG3-212ENST00000590181 PDCD10Q9BUL8 212 aa7.96□□□□□ -1.14
LIG3-212ENST00000590181 ZNF436Q9C0F3 470 aaPredicted RBP7.96□□□□□ -1.14
LIG3-212ENST00000590181 TUBA4BQ9H853 241 aa7.96□□□□□ -1.14
LIG3-212ENST00000590181 KCNIP3Q9Y2W7 256 aa7.96□□□□□ -1.14
LIG3-212ENST00000590181 ZNF320A2RRD8 509 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 M0QYG6 137 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 CTDSP2O14595 271 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 TGOLN2O43493 480 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 IGHV4-30-4P0DP06 118 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 UCP1P25874 307 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 BMI1P35226 326 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 FAUP35544 74 aaKnown RBP7.95□□□□□ -1.14
LIG3-212ENST00000590181 SNCAP37840 140 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 IL18Q14116 193 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 SPCS2Q15005 226 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 AARDQ4LEZ3 155 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 ZNF57Q68EA5 555 aaPredicted RBP7.95□□□□□ -1.14
LIG3-212ENST00000590181 LAMTOR1Q6IAA8 161 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 NOXA1Q86UR1 476 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 OR2C3Q8N628 320 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 OR10W1Q8NGF6 305 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 OR52E5Q8NH55 327 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 FAM110AQ9BQ89 295 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 TM2D3Q9BRN9 247 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 NXF2Q9GZY0 626 aaKnown RBP7.95□□□□□ -1.14
LIG3-212ENST00000590181 TMEM222Q9H0R3 208 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 C5orf66Q9H5L9 145 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 DAZ1Q9NQZ3 744 aaKnown RBP7.95□□□□□ -1.14
LIG3-212ENST00000590181 C21orf62Q9NYP8 219 aa7.95□□□□□ -1.14
LIG3-212ENST00000590181 FABP12A6NFH5 140 aa7.94□□□□□ -1.14
LIG3-212ENST00000590181 C15orf62A8K5M9 175 aa7.94□□□□□ -1.14
LIG3-212ENST00000590181 PPP5D1E7EU14 171 aa7.94□□□□□ -1.14
LIG3-212ENST00000590181 NUPL2O15504 423 aaKnown RBP7.94□□□□□ -1.14
LIG3-212ENST00000590181 CDS2O95674 445 aa7.94□□□□□ -1.14
LIG3-212ENST00000590181 S100A5P33763 92 aa7.94□□□□□ -1.14
LIG3-212ENST00000590181 AKR1C2P52895 323 aa7.94□□□□□ -1.14
LIG3-212ENST00000590181 MFAP4P55083 255 aa7.94□□□□□ -1.14
LIG3-212ENST00000590181 ATP5IP56385 69 aaPredicted RBP7.94□□□□□ -1.14
LIG3-212ENST00000590181 SRPXP78539 464 aa7.94□□□□□ -1.14
LIG3-212ENST00000590181 CD300EQ496F6 205 aaPredicted RBP7.94□□□□□ -1.14
LIG3-212ENST00000590181 SCGB2B2Q4G0G5 96 aa7.94□□□□□ -1.14
LIG3-212ENST00000590181 SCARB1Q8WTV0 552 aa7.94□□□□□ -1.14
LIG3-212ENST00000590181 IL22RA2Q969J5 263 aa7.94□□□□□ -1.14
LIG3-212ENST00000590181 ISOC1Q96CN7 298 aa7.94□□□□□ -1.14
LIG3-212ENST00000590181 SOSTQ9BQB4 213 aa7.94□□□□□ -1.14
LIG3-212ENST00000590181 SPATA25Q9BR10 227 aa7.94□□□□□ -1.14
LIG3-212ENST00000590181 HINT2Q9BX68 163 aa7.94□□□□□ -1.14
LIG3-212ENST00000590181 MIXL1Q9H2W2 232 aa7.94□□□□□ -1.14
LIG3-212ENST00000590181 PLEKHA3Q9HB20 300 aa7.94□□□□□ -1.14
LIG3-212ENST00000590181 ENY2Q9NPA8 101 aa7.94□□□□□ -1.14
LIG3-212ENST00000590181 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.94□□□□□ -1.14
LIG3-212ENST00000590181 PLECQ15149 4684 aaKnown RBP7.94□□□□□ -1.14
LIG3-212ENST00000590181 TEX13DA0A0J9YY54 714 aaPredicted RBP7.93□□□□□ -1.14
LIG3-212ENST00000590181 ANKRD20A5PA0PJZ0 165 aa7.93□□□□□ -1.14
LIG3-212ENST00000590181 ZNF785A8K8V0 405 aa7.93□□□□□ -1.14
LIG3-212ENST00000590181 H3BMQ9 156 aa7.93□□□□□ -1.14
LIG3-212ENST00000590181 HLA-AP01891 365 aaKnown RBP7.93□□□□□ -1.14
LIG3-212ENST00000590181 REG1AP05451 166 aa7.93□□□□□ -1.14
LIG3-212ENST00000590181 P0C879 139 aa7.93□□□□□ -1.14
LIG3-212ENST00000590181 NPBWR1P48145 328 aa7.93□□□□□ -1.14
LIG3-212ENST00000590181 SPCS3P61009 180 aa7.93□□□□□ -1.14
LIG3-212ENST00000590181 TRIM16LQ309B1 348 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms