RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 Q8N6K4 173 aa8.4□□□□□ -1.06
SS18-217ENST00000580958 NPBQ8NG41 125 aa8.4□□□□□ -1.06
SS18-217ENST00000580958 TAF15Q92804 592 aaKnown RBP eCLIP8.4□□□□□ -1.06
SS18-217ENST00000580958 SAT2Q96F10 170 aaPredicted RBP8.4□□□□□ -1.06
SS18-217ENST00000580958 CITED4Q96RK1 184 aa8.4□□□□□ -1.06
SS18-217ENST00000580958 RSG1Q9BU20 258 aa8.4□□□□□ -1.06
SS18-217ENST00000580958 REG4Q9BYZ8 158 aa8.4□□□□□ -1.06
SS18-217ENST00000580958 C7orf69Q9H7B7 122 aa8.4□□□□□ -1.06
SS18-217ENST00000580958 HIF1ANQ9NWT6 349 aa8.4□□□□□ -1.06
SS18-217ENST00000580958 KIAA1456Q9P272 454 aa8.4□□□□□ -1.06
SS18-217ENST00000580958 GCN1Q92616 2671 aaKnown RBP8.4□□□□□ -1.07
SS18-217ENST00000580958 CSPG4Q6UVK1 2322 aa8.4□□□□□ -1.07
SS18-217ENST00000580958 SMCO3A2RU48 225 aa8.39□□□□□ -1.07
SS18-217ENST00000580958 INS-IGF2F8WCM5 200 aa8.39□□□□□ -1.07
SS18-217ENST00000580958 NDUFA3O95167 84 aa8.39□□□□□ -1.07
SS18-217ENST00000580958 PRH1P02810 166 aa8.39□□□□□ -1.07
SS18-217ENST00000580958 OR13C7P0DN81 318 aa8.39□□□□□ -1.07
SS18-217ENST00000580958 TMEM11P17152 192 aa8.39□□□□□ -1.07
SS18-217ENST00000580958 BRS3P32247 399 aa8.39□□□□□ -1.07
SS18-217ENST00000580958 SNCAP37840 140 aa8.39□□□□□ -1.07
SS18-217ENST00000580958 CAMLGP49069 296 aa8.39□□□□□ -1.07
SS18-217ENST00000580958 COMPP49747 757 aaPredicted RBP8.39□□□□□ -1.07
SS18-217ENST00000580958 BLOC1S1P78537 153 aa8.39□□□□□ -1.07
SS18-217ENST00000580958 SSBP2P81877 361 aaPredicted RBP8.39□□□□□ -1.07
SS18-217ENST00000580958 WT1-ASQ06250 92 aa8.39□□□□□ -1.07
SS18-217ENST00000580958 BSXQ3C1V8 233 aa8.39□□□□□ -1.07
SS18-217ENST00000580958 BRD3OSQ6XYD6 125 aa8.39□□□□□ -1.07
SS18-217ENST00000580958 KRTAP1-3Q8IUG1 177 aa8.39□□□□□ -1.07
SS18-217ENST00000580958 Q96MF0 132 aa8.39□□□□□ -1.07
SS18-217ENST00000580958 PSMG3Q9BT73 122 aaPredicted RBP8.39□□□□□ -1.07
SS18-217ENST00000580958 FBXO7Q9Y3I1 522 aa8.39□□□□□ -1.07
SS18-217ENST00000580958 LOC100996750A0A140TA64 210 aa8.38□□□□□ -1.07
SS18-217ENST00000580958 IGLC7A0M8Q6 106 aa8.38□□□□□ -1.07
SS18-217ENST00000580958 REG1AP05451 166 aa8.38□□□□□ -1.07
SS18-217ENST00000580958 S100A1P23297 94 aa8.38□□□□□ -1.07
SS18-217ENST00000580958 GATA3P23771 443 aa8.38□□□□□ -1.07
SS18-217ENST00000580958 FHITP49789 147 aa8.38□□□□□ -1.07
SS18-217ENST00000580958 RAB5CP51148 216 aa8.38□□□□□ -1.07
SS18-217ENST00000580958 ATP5IP56385 69 aaPredicted RBP8.38□□□□□ -1.07
SS18-217ENST00000580958 AANATQ16613 207 aa8.38□□□□□ -1.07
SS18-217ENST00000580958 C5orf64Q2M2E5 130 aa8.38□□□□□ -1.07
SS18-217ENST00000580958 AKR1C8PQ5T2L2 129 aa8.38□□□□□ -1.07
SS18-217ENST00000580958 PXDC1Q5TGL8 231 aa8.38□□□□□ -1.07
SS18-217ENST00000580958 MRPL41Q8IXM3 137 aaKnown RBP8.38□□□□□ -1.07
SS18-217ENST00000580958 FAM213BQ8TBF2 198 aa8.38□□□□□ -1.07
SS18-217ENST00000580958 GGACTQ9BVM4 153 aa8.38□□□□□ -1.07
SS18-217ENST00000580958 KRTAP4-6Q9BYQ5 205 aa8.38□□□□□ -1.07
SS18-217ENST00000580958 PARP11Q9NR21 331 aa8.38□□□□□ -1.07
SS18-217ENST00000580958 WDR83OSQ9Y284 106 aa8.38□□□□□ -1.07
SS18-217ENST00000580958 TIMM9Q9Y5J7 89 aa8.38□□□□□ -1.07
SS18-217ENST00000580958 A0A0U1RQK1 487 aa8.37□□□□□ -1.07
SS18-217ENST00000580958 MFSD2BA6NFX1 497 aa8.37□□□□□ -1.07
SS18-217ENST00000580958 NCBP2LA6PVI3 153 aaKnown RBP8.37□□□□□ -1.07
SS18-217ENST00000580958 TEX22C9J3V5 150 aa8.37□□□□□ -1.07
SS18-217ENST00000580958 UMAD1C9J7I0 102 aa8.37□□□□□ -1.07
SS18-217ENST00000580958 TRIM77I1YAP6 450 aa8.37□□□□□ -1.07
SS18-217ENST00000580958 CNIH1O95406 144 aa8.37□□□□□ -1.07
SS18-217ENST00000580958 FAM106CPP0CH98 169 aa8.37□□□□□ -1.07
SS18-217ENST00000580958 APELAP0DMC3 54 aa8.37□□□□□ -1.07
SS18-217ENST00000580958 IGHV4-31P0DP07 118 aa8.37□□□□□ -1.07
SS18-217ENST00000580958 AREGP15514 252 aa8.37□□□□□ -1.07
SS18-217ENST00000580958 MDKP21741 143 aaPredicted RBP8.37□□□□□ -1.07
SS18-217ENST00000580958 ELLP55199 621 aaPredicted RBP8.37□□□□□ -1.07
SS18-217ENST00000580958 ARSJQ5FYB0 599 aaPredicted RBP8.37□□□□□ -1.07
SS18-217ENST00000580958 KLF17Q5JT82 389 aaPredicted RBP8.37□□□□□ -1.07
SS18-217ENST00000580958 PRSS57Q6UWY2 283 aa8.37□□□□□ -1.07
SS18-217ENST00000580958 BTNL8Q6UX41 500 aa8.37□□□□□ -1.07
SS18-217ENST00000580958 ABHD5Q8WTS1 349 aa8.37□□□□□ -1.07
SS18-217ENST00000580958 SRSF12Q8WXF0 261 aaKnown RBP8.37□□□□□ -1.07
SS18-217ENST00000580958 P2RX4Q99571 388 aa8.37□□□□□ -1.07
SS18-217ENST00000580958 NPCDR1Q9BY65 106 aa8.37□□□□□ -1.07
SS18-217ENST00000580958 HRH4Q9H3N8 390 aa8.37□□□□□ -1.07
SS18-217ENST00000580958 SOX21Q9Y651 276 aaPredicted RBP8.37□□□□□ -1.07
SS18-217ENST00000580958 ANKRD34BA5PLL1 514 aa8.36□□□□□ -1.07
SS18-217ENST00000580958 J3QLI3 93 aa8.36□□□□□ -1.07
SS18-217ENST00000580958 TGFAP01135 160 aa8.36□□□□□ -1.07
SS18-217ENST00000580958 SUB1P53999 127 aaKnown RBP eCLIP8.36□□□□□ -1.07
SS18-217ENST00000580958 AKR1C1Q04828 323 aa8.36□□□□□ -1.07
SS18-217ENST00000580958 ZNF616Q08AN1 781 aa8.36□□□□□ -1.07
SS18-217ENST00000580958 TMEM249Q2WGJ8 235 aa8.36□□□□□ -1.07
SS18-217ENST00000580958 ACSM6Q6P461 480 aa8.36□□□□□ -1.07
SS18-217ENST00000580958 C19orf35Q6ZS72 473 aa8.36□□□□□ -1.07
SS18-217ENST00000580958 HSD17B13Q7Z5P4 300 aaPredicted RBP8.36□□□□□ -1.07
SS18-217ENST00000580958 CENPVQ7Z7K6 275 aaPredicted RBP8.36□□□□□ -1.07
SS18-217ENST00000580958 ZNF709Q8N972 641 aa8.36□□□□□ -1.07
SS18-217ENST00000580958 SSMEM1Q8WWF3 244 aa8.36□□□□□ -1.07
SS18-217ENST00000580958 MARC2Q969Z3 335 aa8.36□□□□□ -1.07
SS18-217ENST00000580958 VSIRQ9H7M9 311 aa8.36□□□□□ -1.07
SS18-217ENST00000580958 CREBBPQ92793 2442 aa8.35□□□□□ -1.07
SS18-217ENST00000580958 ITPR3Q14573 2671 aa8.35□□□□□ -1.07
SS18-217ENST00000580958 A0A1B0GV50 99 aa8.35□□□□□ -1.07
SS18-217ENST00000580958 FNDC10F2Z333 226 aa8.35□□□□□ -1.07
SS18-217ENST00000580958 C17orf112F2Z3M2 114 aa8.35□□□□□ -1.07
SS18-217ENST00000580958 GPX4P36969 197 aaPredicted RBP8.35□□□□□ -1.07
SS18-217ENST00000580958 MFAP2P55001 183 aa8.35□□□□□ -1.07
SS18-217ENST00000580958 SERF2P84101 59 aa8.35□□□□□ -1.07
SS18-217ENST00000580958 CD69Q07108 199 aa8.35□□□□□ -1.07
SS18-217ENST00000580958 FXYD3Q14802 87 aa8.35□□□□□ -1.07
SS18-217ENST00000580958 MLANAQ16655 118 aa8.35□□□□□ -1.07
SS18-217ENST00000580958 TMEM41BQ5BJD5 291 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms