RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 ANK2Q01484 3957 aa12.2□□□□□ -0.46
SS18-216ENST00000580751 TRAV3A0A0B4J244 114 aa12.19□□□□□ -0.46
SS18-216ENST00000580751 TRAV41A0A0B4J266 112 aa12.19□□□□□ -0.46
SS18-216ENST00000580751 A0A1W2PN81 502 aa12.19□□□□□ -0.46
SS18-216ENST00000580751 H0YIZ8 118 aa12.19□□□□□ -0.46
SS18-216ENST00000580751 L7N2F9 121 aa12.19□□□□□ -0.46
SS18-216ENST00000580751 CHRNA7P36544 502 aa12.19□□□□□ -0.46
SS18-216ENST00000580751 POLR2GP62487 172 aaKnown RBP eCLIP12.19□□□□□ -0.46
SS18-216ENST00000580751 RPL23AP62750 156 aaKnown RBP12.19□□□□□ -0.46
SS18-216ENST00000580751 VAMP2P63027 116 aa12.19□□□□□ -0.46
SS18-216ENST00000580751 RPP30P78346 268 aaKnown RBP12.19□□□□□ -0.46
SS18-216ENST00000580751 SSBP2P81877 361 aaPredicted RBP12.19□□□□□ -0.46
SS18-216ENST00000580751 OR2F1Q13607 317 aa12.19□□□□□ -0.46
SS18-216ENST00000580751 ZNF345Q14585 488 aa12.19□□□□□ -0.46
SS18-216ENST00000580751 MRGPRG-AS1Q2M3A8 158 aa12.19□□□□□ -0.46
SS18-216ENST00000580751 Q5BKY6 102 aa12.19□□□□□ -0.46
SS18-216ENST00000580751 COMMD1Q8N668 190 aa12.19□□□□□ -0.46
SS18-216ENST00000580751 OR5AU1Q8NGC0 362 aa12.19□□□□□ -0.46
SS18-216ENST00000580751 SGMS2Q8NHU3 365 aa12.19□□□□□ -0.46
SS18-216ENST00000580751 GRPEL2Q8TAA5 225 aa12.19□□□□□ -0.46
SS18-216ENST00000580751 CITED1Q99966 193 aa12.19□□□□□ -0.46
SS18-216ENST00000580751 HIPK2Q9H2X6 1198 aa12.19□□□□□ -0.46
SS18-216ENST00000580751 NDUFA4L2Q9NRX3 87 aa12.19□□□□□ -0.46
SS18-216ENST00000580751 TNFSF18Q9UNG2 199 aa12.19□□□□□ -0.46
SS18-216ENST00000580751 LSM5Q9Y4Y9 91 aaKnown RBP12.19□□□□□ -0.46
SS18-216ENST00000580751 TEX50A0A1B0GTY4 177 aa12.18□□□□□ -0.46
SS18-216ENST00000580751 FBXO24O75426 580 aa12.18□□□□□ -0.46
SS18-216ENST00000580751 OR2B8PP59922 312 aa12.18□□□□□ -0.46
SS18-216ENST00000580751 ECSCRQ19T08 205 aa12.18□□□□□ -0.46
SS18-216ENST00000580751 ACOT7LQ6ZUV0 252 aa12.18□□□□□ -0.46
SS18-216ENST00000580751 OR11H4Q8NGC9 324 aa12.18□□□□□ -0.46
SS18-216ENST00000580751 DTD1Q8TEA8 209 aa12.18□□□□□ -0.46
SS18-216ENST00000580751 SRSF12Q8WXF0 261 aaKnown RBP12.18□□□□□ -0.46
SS18-216ENST00000580751 AQP10Q96PS8 301 aa12.18□□□□□ -0.46
SS18-216ENST00000580751 FAM103A1Q9BTL3 118 aaKnown RBP12.18□□□□□ -0.46
SS18-216ENST00000580751 SLC25A31Q9H0C2 315 aa12.18□□□□□ -0.46
SS18-216ENST00000580751 RBKSQ9H477 322 aa12.18□□□□□ -0.46
SS18-216ENST00000580751 ENY2Q9NPA8 101 aa12.18□□□□□ -0.46
SS18-216ENST00000580751 LYRM2Q9NU23 88 aaPredicted RBP12.18□□□□□ -0.46
SS18-216ENST00000580751 FBXO7Q9Y3I1 522 aa12.18□□□□□ -0.46
SS18-216ENST00000580751 U3KQ87 197 aa12.18□□□□□ -0.46
SS18-216ENST00000580751 FXYD6-FXYD2A0A087WZ82 144 aa12.17□□□□□ -0.46
SS18-216ENST00000580751 A0A0D9SG52 128 aa12.17□□□□□ -0.46
SS18-216ENST00000580751 CEBPZOSA8MTT3 80 aa12.17□□□□□ -0.46
SS18-216ENST00000580751 SMLR1H3BR10 107 aa12.17□□□□□ -0.46
SS18-216ENST00000580751 EGR2P11161 476 aaPredicted RBP12.17□□□□□ -0.46
SS18-216ENST00000580751 EIF2B2P49770 351 aaKnown RBP12.17□□□□□ -0.46
SS18-216ENST00000580751 KRTAP10-3P60369 221 aa12.17□□□□□ -0.46
SS18-216ENST00000580751 CFHR3Q02985 330 aa12.17□□□□□ -0.46
SS18-216ENST00000580751 BAXQ07812 192 aa12.17□□□□□ -0.46
SS18-216ENST00000580751 AKIRIN2Q53H80 203 aa12.17□□□□□ -0.46
SS18-216ENST00000580751 TEX38Q6PEX7 206 aa12.17□□□□□ -0.46
SS18-216ENST00000580751 UNQ5815/PRO19632Q6UWF5 114 aa12.17□□□□□ -0.46
SS18-216ENST00000580751 ZNF329Q86UD4 541 aa12.17□□□□□ -0.46
SS18-216ENST00000580751 OR2C3Q8N628 320 aa12.17□□□□□ -0.46
SS18-216ENST00000580751 DCUN1D4Q92564 292 aa12.17□□□□□ -0.46
SS18-216ENST00000580751 TMEM68Q96MH6 324 aa12.17□□□□□ -0.46
SS18-216ENST00000580751 PLEKHA3Q9HB20 300 aa12.17□□□□□ -0.46
SS18-216ENST00000580751 OR5AC2Q9NZP5 309 aa12.17□□□□□ -0.46
SS18-216ENST00000580751 G3V318 75 aa12.16□□□□□ -0.46
SS18-216ENST00000580751 SSSCA1O60232 199 aa12.16□□□□□ -0.46
SS18-216ENST00000580751 IGHG4P01861 327 aa12.16□□□□□ -0.46
SS18-216ENST00000580751 RPL27AP46776 148 aaKnown RBP12.16□□□□□ -0.46
SS18-216ENST00000580751 ERHP84090 104 aaKnown RBP12.16□□□□□ -0.46
SS18-216ENST00000580751 C19orf54Q5BKX5 351 aa12.16□□□□□ -0.46
SS18-216ENST00000580751 LFNGQ8NES3 379 aa12.16□□□□□ -0.46
SS18-216ENST00000580751 MFFQ9GZY8 342 aa12.16□□□□□ -0.46
SS18-216ENST00000580751 MAGT1Q9H0U3 335 aa12.16□□□□□ -0.46
SS18-216ENST00000580751 DNHD1Q96M86 4753 aa12.16□□□□□ -0.46
SS18-216ENST00000580751 MSGN1A6NI15 193 aa12.15□□□□□ -0.46
SS18-216ENST00000580751 BOLA2-SMG1P6H3BVE0 249 aa12.15□□□□□ -0.46
SS18-216ENST00000580751 OPN1MWP04001 364 aa12.15□□□□□ -0.46
SS18-216ENST00000580751 ELANEP08246 267 aa12.15□□□□□ -0.46
SS18-216ENST00000580751 OPN1MW2P0DN77 364 aa12.15□□□□□ -0.46
SS18-216ENST00000580751 OPN1MW3P0DN78 364 aa12.15□□□□□ -0.46
SS18-216ENST00000580751 CD28P10747 220 aa12.15□□□□□ -0.46
SS18-216ENST00000580751 PPIFP30405 207 aaKnown RBP12.15□□□□□ -0.46
SS18-216ENST00000580751 HTR2BP41595 481 aa12.15□□□□□ -0.46
SS18-216ENST00000580751 HOXA1P49639 335 aaPredicted RBP12.15□□□□□ -0.46
SS18-216ENST00000580751 PAX9P55771 341 aa12.15□□□□□ -0.46
SS18-216ENST00000580751 FOXE3Q13461 319 aa12.15□□□□□ -0.46
SS18-216ENST00000580751 C10orf55Q5SWW7 151 aa12.15□□□□□ -0.46
SS18-216ENST00000580751 C10orf99Q6UWK7 81 aa12.15□□□□□ -0.46
SS18-216ENST00000580751 C11orf44Q8N8P7 122 aa12.15□□□□□ -0.46
SS18-216ENST00000580751 HEYLQ9NQ87 328 aaPredicted RBP12.15□□□□□ -0.46
SS18-216ENST00000580751 PSENENQ9NZ42 101 aa12.15□□□□□ -0.46
SS18-216ENST00000580751 TAAR5O14804 337 aa12.14□□□□□ -0.47
SS18-216ENST00000580751 ARPC5O15511 151 aa12.14□□□□□ -0.47
SS18-216ENST00000580751 RPL12P30050 165 aaKnown RBP12.14□□□□□ -0.47
SS18-216ENST00000580751 SUB1P53999 127 aaKnown RBP eCLIP12.14□□□□□ -0.47
SS18-216ENST00000580751 STX12Q86Y82 276 aa12.14□□□□□ -0.47
SS18-216ENST00000580751 C9orf62Q8N4C0 152 aa12.14□□□□□ -0.47
SS18-216ENST00000580751 KCNRGQ8N5I3 272 aa12.14□□□□□ -0.47
SS18-216ENST00000580751 OR1L6Q8NGR2 347 aa12.14□□□□□ -0.47
SS18-216ENST00000580751 STRAPQ9Y3F4 350 aaKnown RBP12.14□□□□□ -0.47
SS18-216ENST00000580751 TCRBV4S1A1TA0A5B7 111 aa12.13□□□□□ -0.47
SS18-216ENST00000580751 RNF222A6NCQ9 220 aa12.13□□□□□ -0.47
SS18-216ENST00000580751 TMEM50AO95807 157 aa12.13□□□□□ -0.47
SS18-216ENST00000580751 IGLV1-40P01703 118 aa12.13□□□□□ -0.47
SS18-216ENST00000580751 PSMB8P28062 276 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms