RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 SPAG8Q99932 426 aaPredicted RBP10.24□□□□□ -0.77
CCDC40-216ENST00000576241 C5orf66Q9H5L9 145 aa10.24□□□□□ -0.77
CCDC40-216ENST00000576241 C21orf62Q9NYP8 219 aa10.24□□□□□ -0.77
CCDC40-216ENST00000576241 COMMD3Q9UBI1 195 aa10.24□□□□□ -0.77
CCDC40-216ENST00000576241 ALMS1Q8TCU4 4167 aa10.23□□□□□ -0.77
CCDC40-216ENST00000576241 IGHV3-21A0A0B4J1V1 117 aa10.23□□□□□ -0.77
CCDC40-216ENST00000576241 APOA1P02647 267 aa10.23□□□□□ -0.77
CCDC40-216ENST00000576241 Q56UQ5 140 aa10.23□□□□□ -0.77
CCDC40-216ENST00000576241 LAMTOR1Q6IAA8 161 aa10.23□□□□□ -0.77
CCDC40-216ENST00000576241 LYSMD2Q8IV50 215 aa10.23□□□□□ -0.77
CCDC40-216ENST00000576241 C20orf24Q9BUV8 137 aa10.23□□□□□ -0.77
CCDC40-216ENST00000576241 SCPEP1Q9HB40 452 aa10.23□□□□□ -0.77
CCDC40-216ENST00000576241 C15orf61A6NNL5 157 aa10.22□□□□□ -0.77
CCDC40-216ENST00000576241 NDUFA4O00483 81 aa10.22□□□□□ -0.77
CCDC40-216ENST00000576241 RCVRNP35243 200 aa10.22□□□□□ -0.77
CCDC40-216ENST00000576241 MFAP2P55001 183 aa10.22□□□□□ -0.77
CCDC40-216ENST00000576241 TBC1D26Q86UD7 250 aa10.22□□□□□ -0.77
CCDC40-216ENST00000576241 SNX29P2Q8IUI4 249 aa10.22□□□□□ -0.77
CCDC40-216ENST00000576241 GPX8Q8TED1 209 aa10.22□□□□□ -0.77
CCDC40-216ENST00000576241 SCARB1Q8WTV0 552 aa10.22□□□□□ -0.77
CCDC40-216ENST00000576241 CMTM3Q96MX0 182 aa10.22□□□□□ -0.77
CCDC40-216ENST00000576241 FAM212BQ9NTI7 297 aaPredicted RBP10.22□□□□□ -0.77
CCDC40-216ENST00000576241 TMEM14BQ9NUH8 114 aa10.22□□□□□ -0.77
CCDC40-216ENST00000576241 K7EIM0 57 aa10.21□□□□□ -0.77
CCDC40-216ENST00000576241 TSPAN4O14817 238 aa10.21□□□□□ -0.77
CCDC40-216ENST00000576241 APOC4P55056 127 aa10.21□□□□□ -0.77
CCDC40-216ENST00000576241 NCS1P62166 190 aa10.21□□□□□ -0.77
CCDC40-216ENST00000576241 RELQ04864 619 aaPredicted RBP10.21□□□□□ -0.77
CCDC40-216ENST00000576241 H2BFWTQ7Z2G1 175 aa10.21□□□□□ -0.77
CCDC40-216ENST00000576241 OR1P1Q8NH06 330 aa10.21□□□□□ -0.77
CCDC40-216ENST00000576241 OR4A16Q8NH70 328 aa10.21□□□□□ -0.77
CCDC40-216ENST00000576241 CHRDL1Q9BU40 450 aa10.21□□□□□ -0.77
CCDC40-216ENST00000576241 FUNDC2Q9BWH2 189 aa10.21□□□□□ -0.77
CCDC40-216ENST00000576241 OR4C46A6NHA9 309 aa10.2□□□□□ -0.78
CCDC40-216ENST00000576241 K7EMT4 169 aa10.2□□□□□ -0.78
CCDC40-216ENST00000576241 NUPL2O15504 423 aaKnown RBP10.2□□□□□ -0.78
CCDC40-216ENST00000576241 VBP1P61758 197 aa10.2□□□□□ -0.78
CCDC40-216ENST00000576241 MISP3Q96FF7 219 aa10.2□□□□□ -0.78
CCDC40-216ENST00000576241 OVOL2Q9BRP0 275 aa10.2□□□□□ -0.78
CCDC40-216ENST00000576241 UBQLN2Q9UHD9 624 aa10.2□□□□□ -0.78
CCDC40-216ENST00000576241 IGHV3OR16-8A0A075B7F1 116 aa10.19□□□□□ -0.78
CCDC40-216ENST00000576241 DBX1A6NMT0 343 aa10.19□□□□□ -0.78
CCDC40-216ENST00000576241 C15orf62A8K5M9 175 aa10.19□□□□□ -0.78
CCDC40-216ENST00000576241 F8W735 103 aaPredicted RBP10.19□□□□□ -0.78
CCDC40-216ENST00000576241 ZNF207O43670 478 aaKnown RBP10.19□□□□□ -0.78
CCDC40-216ENST00000576241 HPGDSO60760 199 aa10.19□□□□□ -0.78
CCDC40-216ENST00000576241 ELK1P19419 428 aa10.19□□□□□ -0.78
CCDC40-216ENST00000576241 ADMP35318 185 aa10.19□□□□□ -0.78
CCDC40-216ENST00000576241 RORCP51449 518 aa10.19□□□□□ -0.78
CCDC40-216ENST00000576241 MFAP4P55083 255 aa10.19□□□□□ -0.78
CCDC40-216ENST00000576241 UCP3P55916 312 aa10.19□□□□□ -0.78
CCDC40-216ENST00000576241 MZT2AQ6P582 158 aa10.19□□□□□ -0.78
CCDC40-216ENST00000576241 MRGPRFQ96AM1 343 aa10.19□□□□□ -0.78
CCDC40-216ENST00000576241 SEC22AQ96IW7 307 aa10.19□□□□□ -0.78
CCDC40-216ENST00000576241 FAM25AB3EWG3 89 aa10.18□□□□□ -0.78
CCDC40-216ENST00000576241 FAM25CB3EWG5 89 aa10.18□□□□□ -0.78
CCDC40-216ENST00000576241 FAM25GB3EWG6 89 aa10.18□□□□□ -0.78
CCDC40-216ENST00000576241 M0QYG6 137 aa10.18□□□□□ -0.78
CCDC40-216ENST00000576241 UBE2CO00762 179 aa10.18□□□□□ -0.78
CCDC40-216ENST00000576241 YIF1AO95070 293 aa10.18□□□□□ -0.78
CCDC40-216ENST00000576241 CTSGP08311 255 aa10.18□□□□□ -0.78
CCDC40-216ENST00000576241 PGAM2P15259 253 aa10.18□□□□□ -0.78
CCDC40-216ENST00000576241 Q6ZWC4 215 aa10.18□□□□□ -0.78
CCDC40-216ENST00000576241 AP3S1Q92572 193 aa10.18□□□□□ -0.78
CCDC40-216ENST00000576241 TXN2Q99757 166 aa10.18□□□□□ -0.78
CCDC40-216ENST00000576241 TP53TG1Q9Y2A0 90 aa10.18□□□□□ -0.78
CCDC40-216ENST00000576241 KIR2DL5BA0A0G2JN68 375 aa10.17□□□□□ -0.78
CCDC40-216ENST00000576241 KIR2DL5BA0A0G2JPC4 375 aa10.17□□□□□ -0.78
CCDC40-216ENST00000576241 I3L2K1 104 aa10.17□□□□□ -0.78
CCDC40-216ENST00000576241 SPRY2O43597 315 aa10.17□□□□□ -0.78
CCDC40-216ENST00000576241 IGKV1-39P01597 117 aa10.17□□□□□ -0.78
CCDC40-216ENST00000576241 IGKV1D-39P04432 117 aa10.17□□□□□ -0.78
CCDC40-216ENST00000576241 CTSDP07339 412 aaPredicted RBP10.17□□□□□ -0.78
CCDC40-216ENST00000576241 BMI1P35226 326 aa10.17□□□□□ -0.78
CCDC40-216ENST00000576241 HSPE1P61604 102 aaKnown RBP10.17□□□□□ -0.78
CCDC40-216ENST00000576241 ERHP84090 104 aaKnown RBP10.17□□□□□ -0.78
CCDC40-216ENST00000576241 PRCDQ00LT1 54 aa10.17□□□□□ -0.78
CCDC40-216ENST00000576241 ODF3L2Q3SX64 289 aa10.17□□□□□ -0.78
CCDC40-216ENST00000576241 RNASE10Q5GAN6 216 aaKnown RBP10.17□□□□□ -0.78
CCDC40-216ENST00000576241 KIR2DL5AQ8N109 375 aa10.17□□□□□ -0.78
CCDC40-216ENST00000576241 STPG3Q8N7X2 389 aa10.17□□□□□ -0.78
CCDC40-216ENST00000576241 ZNF114Q8NC26 417 aa10.17□□□□□ -0.78
CCDC40-216ENST00000576241 KIR2DL5BQ8NHK3 375 aa10.17□□□□□ -0.78
CCDC40-216ENST00000576241 PINX1Q96BK5 328 aaKnown RBP10.17□□□□□ -0.78
CCDC40-216ENST00000576241 C6orf62Q9GZU0 229 aaPredicted RBP10.17□□□□□ -0.78
CCDC40-216ENST00000576241 SMPXQ9UHP9 88 aa10.17□□□□□ -0.78
CCDC40-216ENST00000576241 HECTD4Q9Y4D8 3996 aa10.17□□□□□ -0.78
CCDC40-216ENST00000576241 IGHV7-4-1A0A0J9YVY3 117 aa10.16□□□□□ -0.78
CCDC40-216ENST00000576241 CXorf65A6NEN9 183 aa10.16□□□□□ -0.78
CCDC40-216ENST00000576241 GNG7O60262 68 aa10.16□□□□□ -0.78
CCDC40-216ENST00000576241 ATG12O94817 140 aa10.16□□□□□ -0.78
CCDC40-216ENST00000576241 MT-CO2P00403 227 aa10.16□□□□□ -0.78
CCDC40-216ENST00000576241 FCGR2BP31994 310 aaPredicted RBP10.16□□□□□ -0.78
CCDC40-216ENST00000576241 AKR1C2P52895 323 aa10.16□□□□□ -0.78
CCDC40-216ENST00000576241 RND3P61587 244 aa10.16□□□□□ -0.78
CCDC40-216ENST00000576241 DEFB135Q30KP9 77 aa10.16□□□□□ -0.78
CCDC40-216ENST00000576241 RNASE12Q5GAN4 147 aaKnown RBP10.16□□□□□ -0.78
CCDC40-216ENST00000576241 WFDC3Q8IUB2 231 aa10.16□□□□□ -0.78
CCDC40-216ENST00000576241 TMEM116Q8NCL8 245 aa10.16□□□□□ -0.78
CCDC40-216ENST00000576241 ZNF486Q96H40 463 aaPredicted RBP10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms