RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 SOCS1O15524 211 aa11.01□□□□□ -0.65
VPS53-218ENST00000575207 WT1-ASQ06250 92 aa11.01□□□□□ -0.65
VPS53-218ENST00000575207 RCN1Q15293 331 aa11.01□□□□□ -0.65
VPS53-218ENST00000575207 RRN3P1Q2M238 152 aa11.01□□□□□ -0.65
VPS53-218ENST00000575207 NTN5Q8WTR8 489 aaPredicted RBP11.01□□□□□ -0.65
VPS53-218ENST00000575207 SMIM19Q96E16 107 aa11.01□□□□□ -0.65
VPS53-218ENST00000575207 SLC29A1Q99808 456 aa11.01□□□□□ -0.65
VPS53-218ENST00000575207 GINS4Q9BRT9 223 aa11.01□□□□□ -0.65
VPS53-218ENST00000575207 F11RQ9Y624 299 aaKnown RBP11.01□□□□□ -0.65
VPS53-218ENST00000575207 G3V2T6 193 aa11□□□□□ -0.65
VPS53-218ENST00000575207 ATP5G1P05496 136 aa11□□□□□ -0.65
VPS53-218ENST00000575207 DEFB130BP0DP73 79 aa11□□□□□ -0.65
VPS53-218ENST00000575207 DEFB130AP0DP74 79 aa11□□□□□ -0.65
VPS53-218ENST00000575207 CD36P16671 472 aa11□□□□□ -0.65
VPS53-218ENST00000575207 ATP5G3P48201 142 aa11□□□□□ -0.65
VPS53-218ENST00000575207 FXYD7P58549 80 aa11□□□□□ -0.65
VPS53-218ENST00000575207 UNC119Q13432 240 aa11□□□□□ -0.65
VPS53-218ENST00000575207 TIMM50Q3ZCQ8 353 aa11□□□□□ -0.65
VPS53-218ENST00000575207 HSD17B13Q7Z5P4 300 aaPredicted RBP11□□□□□ -0.65
VPS53-218ENST00000575207 GABARAPL3Q9BY60 117 aa11□□□□□ -0.65
VPS53-218ENST00000575207 GOLT1BQ9Y3E0 138 aa11□□□□□ -0.65
VPS53-218ENST00000575207 A0A1W2PS18 150 aa10.99□□□□□ -0.65
VPS53-218ENST00000575207 RS1O15537 224 aa10.99□□□□□ -0.65
VPS53-218ENST00000575207 HOXA1P49639 335 aaPredicted RBP10.99□□□□□ -0.65
VPS53-218ENST00000575207 RPS11P62280 158 aaKnown RBP eCLIP10.99□□□□□ -0.65
VPS53-218ENST00000575207 DHRS2Q13268 280 aa10.99□□□□□ -0.65
VPS53-218ENST00000575207 TTC23Q5W5X9 447 aa10.99□□□□□ -0.65
VPS53-218ENST00000575207 THOC7Q6I9Y2 204 aaKnown RBP10.99□□□□□ -0.65
VPS53-218ENST00000575207 TCTEX1D2Q8WW35 142 aa10.99□□□□□ -0.65
VPS53-218ENST00000575207 Q96MT0 163 aa10.99□□□□□ -0.65
VPS53-218ENST00000575207 KCNK15Q9H427 330 aa10.99□□□□□ -0.65
VPS53-218ENST00000575207 FSIP2Q5CZC0 6907 aa10.99□□□□□ -0.65
VPS53-218ENST00000575207 HLA-DRB4P13762 266 aa10.98□□□□□ -0.65
VPS53-218ENST00000575207 MFAP4P55083 255 aa10.98□□□□□ -0.65
VPS53-218ENST00000575207 BRWD1-AS2P59051 145 aa10.98□□□□□ -0.65
VPS53-218ENST00000575207 KCTD21Q4G0X4 260 aa10.98□□□□□ -0.65
VPS53-218ENST00000575207 YIF1BQ5BJH7 314 aa10.98□□□□□ -0.65
VPS53-218ENST00000575207 RBM48Q5RL73 367 aaKnown RBP10.98□□□□□ -0.65
VPS53-218ENST00000575207 C1orf158Q8N1D5 194 aa10.98□□□□□ -0.65
VPS53-218ENST00000575207 TXN2Q99757 166 aa10.98□□□□□ -0.65
VPS53-218ENST00000575207 C7orf50Q9BRJ6 194 aaKnown RBP10.98□□□□□ -0.65
VPS53-218ENST00000575207 RBMX2Q9Y388 322 aaKnown RBP10.98□□□□□ -0.65
VPS53-218ENST00000575207 HLA-DRB4X5D2U9 266 aa10.98□□□□□ -0.65
VPS53-218ENST00000575207 TRAV3A0A0B4J244 114 aa10.97□□□□□ -0.65
VPS53-218ENST00000575207 OGG1O15527 345 aa10.97□□□□□ -0.65
VPS53-218ENST00000575207 DCKP27707 260 aa10.97□□□□□ -0.65
VPS53-218ENST00000575207 P2RY1P47900 373 aa10.97□□□□□ -0.65
VPS53-218ENST00000575207 H1FOOQ8IZA3 346 aaPredicted RBP10.97□□□□□ -0.65
VPS53-218ENST00000575207 AIFM2Q9BRQ8 373 aa10.97□□□□□ -0.65
VPS53-218ENST00000575207 GABARAPL1Q9H0R8 117 aa10.97□□□□□ -0.65
VPS53-218ENST00000575207 LPAR5Q9H1C0 372 aa10.97□□□□□ -0.65
VPS53-218ENST00000575207 ZFAND3Q9H8U3 227 aa10.97□□□□□ -0.65
VPS53-218ENST00000575207 TMEM14DPA8MWL7 114 aa10.96□□□□□ -0.65
VPS53-218ENST00000575207 J3QRK9 145 aa10.96□□□□□ -0.65
VPS53-218ENST00000575207 IGKV3-20P01619 116 aa10.96□□□□□ -0.65
VPS53-218ENST00000575207 LIMS3P0CW19 117 aa10.96□□□□□ -0.65
VPS53-218ENST00000575207 LIMS4P0CW20 117 aa10.96□□□□□ -0.65
VPS53-218ENST00000575207 TRAPPC2P0DI81 140 aa10.96□□□□□ -0.65
VPS53-218ENST00000575207 TRAPPC2BP0DI82 140 aa10.96□□□□□ -0.65
VPS53-218ENST00000575207 NPPCP23582 126 aa10.96□□□□□ -0.65
VPS53-218ENST00000575207 SNRPD3P62318 126 aaKnown RBP10.96□□□□□ -0.65
VPS53-218ENST00000575207 SLC25A46Q96AG3 418 aa10.96□□□□□ -0.65
VPS53-218ENST00000575207 ARHGAP5-AS1Q96IT6 56 aa10.96□□□□□ -0.65
VPS53-218ENST00000575207 HSD17B10Q99714 261 aaKnown RBP10.96□□□□□ -0.65
VPS53-218ENST00000575207 SPATA2Q9UM82 520 aa10.96□□□□□ -0.65
VPS53-218ENST00000575207 CBY3A6NI87 242 aa10.95□□□□□ -0.66
VPS53-218ENST00000575207 FOXI3A8MTJ6 420 aaPredicted RBP10.95□□□□□ -0.66
VPS53-218ENST00000575207 UPK2O00526 184 aa10.95□□□□□ -0.66
VPS53-218ENST00000575207 GNG7O60262 68 aa10.95□□□□□ -0.66
VPS53-218ENST00000575207 TMEM50BP56557 158 aa10.95□□□□□ -0.66
VPS53-218ENST00000575207 SPATA24Q86W54 205 aa10.95□□□□□ -0.66
VPS53-218ENST00000575207 ZNF709Q8N972 641 aa10.95□□□□□ -0.66
VPS53-218ENST00000575207 RXFP4Q8TDU9 374 aa10.95□□□□□ -0.66
VPS53-218ENST00000575207 GNPNAT1Q96EK6 184 aaPredicted RBP10.95□□□□□ -0.66
VPS53-218ENST00000575207 URM1Q9BTM9 101 aaKnown RBP10.95□□□□□ -0.66
VPS53-218ENST00000575207 SIVA1O15304 175 aa10.94□□□□□ -0.66
VPS53-218ENST00000575207 IGLV2-14P01704 120 aa10.94□□□□□ -0.66
VPS53-218ENST00000575207 CDK1P06493 297 aa10.94□□□□□ -0.66
VPS53-218ENST00000575207 FGF2P09038 288 aa10.94□□□□□ -0.66
VPS53-218ENST00000575207 EIF2B2P49770 351 aaKnown RBP10.94□□□□□ -0.66
VPS53-218ENST00000575207 MRPS15P82914 257 aaKnown RBP10.94□□□□□ -0.66
VPS53-218ENST00000575207 QRFPP83859 136 aa10.94□□□□□ -0.66
VPS53-218ENST00000575207 FAM89BQ8N5H3 189 aa10.94□□□□□ -0.66
VPS53-218ENST00000575207 OR52I1Q8NGK6 324 aa10.94□□□□□ -0.66
VPS53-218ENST00000575207 LSM10Q969L4 123 aaKnown RBP10.94□□□□□ -0.66
VPS53-218ENST00000575207 DERL3Q96Q80 235 aa10.94□□□□□ -0.66
VPS53-218ENST00000575207 PECRQ9BY49 303 aa10.94□□□□□ -0.66
VPS53-218ENST00000575207 SLC22A5O76082 557 aa10.93□□□□□ -0.66
VPS53-218ENST00000575207 FCGR3AP08637 254 aa10.93□□□□□ -0.66
VPS53-218ENST00000575207 HSP90B2PQ58FF3 399 aa10.93□□□□□ -0.66
VPS53-218ENST00000575207 ZNF600Q6ZNG1 722 aa10.93□□□□□ -0.66
VPS53-218ENST00000575207 OR4C16Q8NGL9 310 aa10.93□□□□□ -0.66
VPS53-218ENST00000575207 FCGR1BQ92637 280 aa10.93□□□□□ -0.66
VPS53-218ENST00000575207 GPHA2Q96T91 129 aa10.93□□□□□ -0.66
VPS53-218ENST00000575207 SEPSECSQ9HD40 501 aaKnown RBP10.93□□□□□ -0.66
VPS53-218ENST00000575207 AMBNQ9NP70 447 aa10.93□□□□□ -0.66
VPS53-218ENST00000575207 FAM90A26D6RGX4 464 aa10.92□□□□□ -0.66
VPS53-218ENST00000575207 I3L2K1 104 aa10.92□□□□□ -0.66
VPS53-218ENST00000575207 BPNT1O95861 308 aa10.92□□□□□ -0.66
VPS53-218ENST00000575207 EIF4EBP1Q13541 118 aaPredicted RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms