RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 OR1L6Q8NGR2 347 aa13.33□□□□□ -0.27
NUP88-210ENST00000574867 MYOZ3Q8TDC0 251 aa13.33□□□□□ -0.27
NUP88-210ENST00000574867 KLK9Q2XQG4 91 aa13.33□□□□□ -0.28
NUP88-210ENST00000574867 SHISA2Q6UWI4 295 aa13.33□□□□□ -0.28
NUP88-210ENST00000574867 DTD1Q8TEA8 209 aa13.33□□□□□ -0.28
NUP88-210ENST00000574867 C2orf50Q96LR7 162 aa13.33□□□□□ -0.28
NUP88-210ENST00000574867 HIPK2Q9H2X6 1198 aa13.33□□□□□ -0.28
NUP88-210ENST00000574867 RBKSQ9H477 322 aa13.33□□□□□ -0.28
NUP88-210ENST00000574867 ZFP57Q9NU63 452 aa13.33□□□□□ -0.28
NUP88-210ENST00000574867 KLK9Q9UKQ9 250 aa13.33□□□□□ -0.28
NUP88-210ENST00000574867 F11RQ9Y624 299 aaKnown RBP13.33□□□□□ -0.28
NUP88-210ENST00000574867 TCRBV4S1A1TA0A5B7 111 aa13.32□□□□□ -0.28
NUP88-210ENST00000574867 LY86O95711 162 aa13.32□□□□□ -0.28
NUP88-210ENST00000574867 TRGV3P03979 118 aa13.32□□□□□ -0.28
NUP88-210ENST00000574867 RPLP1P05386 114 aaKnown RBP13.32□□□□□ -0.28
NUP88-210ENST00000574867 SNCAP37840 140 aa13.32□□□□□ -0.28
NUP88-210ENST00000574867 TPPP2P59282 170 aa13.32□□□□□ -0.28
NUP88-210ENST00000574867 C2orf68Q2NKX9 166 aa13.32□□□□□ -0.28
NUP88-210ENST00000574867 C11orf44Q8N8P7 122 aa13.32□□□□□ -0.28
NUP88-210ENST00000574867 OR1P1Q8NH06 330 aa13.32□□□□□ -0.28
NUP88-210ENST00000574867 HEYLQ9NQ87 328 aaPredicted RBP13.32□□□□□ -0.28
NUP88-210ENST00000574867 GSKIPQ9P0R6 139 aa13.32□□□□□ -0.28
NUP88-210ENST00000574867 TSSC4Q9Y5U2 329 aaPredicted RBP13.32□□□□□ -0.28
NUP88-210ENST00000574867 TRBV9A0A0B4J1U6 114 aa13.32□□□□□ -0.28
NUP88-210ENST00000574867 FAM223BA6NKX1 122 aa13.32□□□□□ -0.28
NUP88-210ENST00000574867 ID3Q02535 119 aa13.32□□□□□ -0.28
NUP88-210ENST00000574867 KHDC1LQ5JSQ8 128 aa13.32□□□□□ -0.28
NUP88-210ENST00000574867 FAM223AQ8IWN6 122 aa13.32□□□□□ -0.28
NUP88-210ENST00000574867 MS4A10Q96PG2 267 aa13.32□□□□□ -0.28
NUP88-210ENST00000574867 CIB3Q96Q77 187 aaPredicted RBP13.32□□□□□ -0.28
NUP88-210ENST00000574867 CITED2Q99967 270 aaPredicted RBP13.32□□□□□ -0.28
NUP88-210ENST00000574867 KLK15Q9H2R5 256 aa13.32□□□□□ -0.28
NUP88-210ENST00000574867 IGLV11-55A0A075B6I3 123 aa13.31□□□□□ -0.28
NUP88-210ENST00000574867 WRBO00258 174 aa13.31□□□□□ -0.28
NUP88-210ENST00000574867 SYNGR2O43760 224 aa13.31□□□□□ -0.28
NUP88-210ENST00000574867 HTR2BP41595 481 aa13.31□□□□□ -0.28
NUP88-210ENST00000574867 SUB1P53999 127 aaKnown RBP eCLIP13.31□□□□□ -0.28
NUP88-210ENST00000574867 LCNL1Q6ZST4 164 aa13.31□□□□□ -0.28
NUP88-210ENST00000574867 NDUFA11Q86Y39 141 aa13.31□□□□□ -0.28
NUP88-210ENST00000574867 NECAP1Q8NC96 275 aa13.31□□□□□ -0.28
NUP88-210ENST00000574867 P2RX4Q99571 388 aa13.31□□□□□ -0.28
NUP88-210ENST00000574867 MED28Q9H204 178 aa13.31□□□□□ -0.28
NUP88-210ENST00000574867 THYN1Q9P016 225 aa13.31□□□□□ -0.28
NUP88-210ENST00000574867 MGAT4CQ9UBM8 478 aa13.31□□□□□ -0.28
NUP88-210ENST00000574867 TENM1Q9UKZ4 2725 aa13.31□□□□□ -0.28
NUP88-210ENST00000574867 A0A0G2JLM5 398 aa13.3□□□□□ -0.28
NUP88-210ENST00000574867 PRH1P02810 166 aa13.3□□□□□ -0.28
NUP88-210ENST00000574867 RPL23AP62750 156 aaKnown RBP13.3□□□□□ -0.28
NUP88-210ENST00000574867 SRSF4Q08170 494 aaKnown RBP13.3□□□□□ -0.28
NUP88-210ENST00000574867 BSXQ3C1V8 233 aa13.3□□□□□ -0.28
NUP88-210ENST00000574867 C19orf35Q6ZS72 473 aa13.3□□□□□ -0.28
NUP88-210ENST00000574867 USMG5Q96IX5 58 aa13.3□□□□□ -0.28
NUP88-210ENST00000574867 UBE2E2Q96LR5 201 aa13.3□□□□□ -0.28
NUP88-210ENST00000574867 FANCD2OSQ96PS1 177 aa13.3□□□□□ -0.28
NUP88-210ENST00000574867 SCGB1D2O95969 90 aa13.3□□□□□ -0.28
NUP88-210ENST00000574867 RHOGP84095 191 aa13.3□□□□□ -0.28
NUP88-210ENST00000574867 CYCSP99999 105 aaKnown RBP13.3□□□□□ -0.28
NUP88-210ENST00000574867 SLC24A4Q8NFF2 622 aa13.3□□□□□ -0.28
NUP88-210ENST00000574867 MAGT1Q9H0U3 335 aa13.3□□□□□ -0.28
NUP88-210ENST00000574867 U3KQ87 197 aa13.3□□□□□ -0.28
NUP88-210ENST00000574867 CDX1P47902 265 aaPredicted RBP13.29□□□□□ -0.28
NUP88-210ENST00000574867 ZNF491Q8N8L2 437 aa13.29□□□□□ -0.28
NUP88-210ENST00000574867 NMES1Q9C002 83 aa13.29□□□□□ -0.28
NUP88-210ENST00000574867 CORTO00230 105 aa13.28□□□□□ -0.28
NUP88-210ENST00000574867 RNASE2P10153 161 aaKnown RBP13.28□□□□□ -0.28
NUP88-210ENST00000574867 ATP5IP56385 69 aaPredicted RBP13.28□□□□□ -0.28
NUP88-210ENST00000574867 H2BFSP57053 126 aa13.28□□□□□ -0.28
NUP88-210ENST00000574867 RRAS2P62070 204 aaPredicted RBP13.28□□□□□ -0.28
NUP88-210ENST00000574867 KIAA0141Q14154 515 aaPredicted RBP13.28□□□□□ -0.28
NUP88-210ENST00000574867 NOXA1Q86UR1 476 aa13.28□□□□□ -0.28
NUP88-210ENST00000574867 SPATA3Q8NHX4 192 aa13.28□□□□□ -0.28
NUP88-210ENST00000574867 DMRT1Q9Y5R6 373 aa13.28□□□□□ -0.28
NUP88-210ENST00000574867 STAB1Q9NY15 2570 aa13.28□□□□□ -0.28
NUP88-210ENST00000574867 OR2J3O76001 311 aa13.28□□□□□ -0.28
NUP88-210ENST00000574867 SIX6O95475 246 aa13.28□□□□□ -0.28
NUP88-210ENST00000574867 MBPP02686 304 aaPredicted RBP13.28□□□□□ -0.28
NUP88-210ENST00000574867 POLR2GP62487 172 aaKnown RBP eCLIP13.28□□□□□ -0.28
NUP88-210ENST00000574867 IL15RAQ13261 267 aa13.28□□□□□ -0.28
NUP88-210ENST00000574867 C2orf83Q53S99 150 aa13.28□□□□□ -0.28
NUP88-210ENST00000574867 SLC25A24Q6NUK1 477 aa13.28□□□□□ -0.28
NUP88-210ENST00000574867 FBXL7Q9UJT9 491 aa13.28□□□□□ -0.28
NUP88-210ENST00000574867 SSSCA1O60232 199 aa13.27□□□□□ -0.28
NUP88-210ENST00000574867 IAPPP10997 89 aa13.27□□□□□ -0.28
NUP88-210ENST00000574867 NPY1RP25929 384 aa13.27□□□□□ -0.28
NUP88-210ENST00000574867 MFAP2P55001 183 aa13.27□□□□□ -0.28
NUP88-210ENST00000574867 RPP30P78346 268 aaKnown RBP13.27□□□□□ -0.28
NUP88-210ENST00000574867 C15orf32Q32M92 178 aa13.27□□□□□ -0.28
NUP88-210ENST00000574867 PVRIGQ6DKI7 326 aa13.27□□□□□ -0.28
NUP88-210ENST00000574867 C4orf3Q8WVX3 66 aa13.27□□□□□ -0.28
NUP88-210ENST00000574867 RAB40CQ96S21 281 aa13.27□□□□□ -0.28
NUP88-210ENST00000574867 RCL1Q9Y2P8 373 aaKnown RBP13.27□□□□□ -0.28
NUP88-210ENST00000574867 IFNA10P01566 189 aa13.27□□□□□ -0.29
NUP88-210ENST00000574867 ATP5G2Q06055 141 aa13.27□□□□□ -0.29
NUP88-210ENST00000574867 FCN2Q15485 313 aa13.27□□□□□ -0.29
NUP88-210ENST00000574867 KLHL30-AS1Q8NEE0 82 aa13.27□□□□□ -0.29
NUP88-210ENST00000574867 CXorf58Q96LI9 332 aa13.27□□□□□ -0.29
NUP88-210ENST00000574867 ADARB2-AS1A8MUL3 147 aa13.26□□□□□ -0.29
NUP88-210ENST00000574867 NUDT19A8MXV4 375 aa13.26□□□□□ -0.29
NUP88-210ENST00000574867 FAM209BQ5JX69 171 aa13.26□□□□□ -0.29
NUP88-210ENST00000574867 ASB13Q8WXK3 278 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms