RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 KLF9Q13886 244 aaPredicted RBP2.15□□□□□ -2.07
VPS35-209ENST00000568642 PMVKQ15126 192 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 LTC4SQ16873 150 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 CENPWQ5EE01 88 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 SAMD13Q5VXD3 122 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 MORN5Q5VZ52 161 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 ZNF343Q6P1L6 599 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 DCUN1D2Q6PH85 259 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 WDR59Q6PJI9 974 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 ZNF493Q6ZR52 646 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 OOSP2Q86WS3 158 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 RAB42Q8N4Z0 105 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 DRAM1Q8N682 238 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 LINC01555Q8NAE3 123 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 MAPK1IP1LQ8NDC0 245 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 LY6G5BQ8NDX9 201 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 NUP37Q8NFH4 326 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 FDCSPQ8NFU4 85 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 OR4D11Q8NGI4 311 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 OR9Q1Q8NGQ5 310 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 FNDC9Q8TBE3 224 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 LMX1AQ8TE12 382 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 C7orf33Q8WU49 177 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 ITLN1Q8WWA0 313 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 SLC25A44Q96H78 314 aaPredicted RBP2.15□□□□□ -2.07
VPS35-209ENST00000568642 ACY3Q96HD9 319 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 BTF3L4Q96K17 158 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 SMIM8Q96KF7 97 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 IGF2BP2-AS1Q96M15 143 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 ZNF778Q96MU6 729 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 PGLYRP2Q96PD5 576 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 ERMAPQ96PL5 475 aaPredicted RBP2.15□□□□□ -2.07
VPS35-209ENST00000568642 OR4K3Q96R72 315 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 EFCAB11Q9BUY7 163 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 SFXN3Q9BWM7 321 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 ZNF436Q9C0F3 470 aaPredicted RBP2.15□□□□□ -2.07
VPS35-209ENST00000568642 AIG1Q9NVV5 245 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 SLC23A2Q9UGH3 650 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 SLC25A15Q9Y619 301 aa2.15□□□□□ -2.07
VPS35-209ENST00000568642 PLIN4Q96Q06 1357 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 CCDC88CQ9P219 2028 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 RNF213Q63HN8 5207 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 A0A087WUU8 490 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 MEIKINA0A087WXM9 373 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 A0A096LPI6 279 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 A0A1B0GX51 115 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 LY6LH3BQJ8 138 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 H7BYZ3 331 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 CYB5BO43169 146 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 SS18L1O75177 396 aaPredicted RBP2.14□□□□□ -2.07
VPS35-209ENST00000568642 KCNK2O95069 426 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 DUSP14O95147 198 aaKnown RBP2.14□□□□□ -2.07
VPS35-209ENST00000568642 IGHV3-23P01764 117 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 CECR9P0C854 216 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 MPC1LP0DKB6 136 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 IFI30P13284 250 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 CPMP14384 443 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 ZNF30P17039 623 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 ATF1P18846 271 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 OGNP20774 298 aaKnown RBP2.14□□□□□ -2.07
VPS35-209ENST00000568642 S100PP25815 95 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 PSMB9P28065 219 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 NUDT1P36639 197 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 SERPINB10P48595 397 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 EVX1P49640 407 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 RAB13P51153 203 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 POLR2HP52434 150 aaKnown RBP2.14□□□□□ -2.07
VPS35-209ENST00000568642 SYNJ2BPP57105 145 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 DSCR9P59020 149 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 TAS2R46P59540 309 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 TPI1P60174 286 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 SNRPD2P62316 118 aaKnown RBP2.14□□□□□ -2.07
VPS35-209ENST00000568642 RPS28P62857 69 aaKnown RBP2.14□□□□□ -2.07
VPS35-209ENST00000568642 FABP5Q01469 135 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 RELAQ04206 551 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 ZNF616Q08AN1 781 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 PLCXD2Q0VAA5 305 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 TWIST1Q15672 202 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 GRK1Q15835 563 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 CCSMST1Q4G0I0 132 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 ZNF773Q6PK81 442 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 CEMP1Q6PRD7 247 aaPredicted RBP2.14□□□□□ -2.07
VPS35-209ENST00000568642 SBSNQ6UWP8 590 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 LYPD2Q6UXB3 125 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 PEX26Q7Z412 305 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 SGPP2Q8IWX5 399 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 METTL27Q8N6F8 245 aaPredicted RBP2.14□□□□□ -2.07
VPS35-209ENST00000568642 ZNF283Q8N7M2 679 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 OR2M3Q8NG83 312 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 MFSD8Q8NHS3 518 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 ZNF420Q8TAQ5 688 aaPredicted RBP2.14□□□□□ -2.07
VPS35-209ENST00000568642 RXFP4Q8TDU9 374 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 ZNF721Q8TF20 911 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 THEM6Q8WUY1 208 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 CYGBQ8WWM9 190 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 GEMIN6Q8WXD5 167 aaKnown RBP2.14□□□□□ -2.07
VPS35-209ENST00000568642 BORCS7Q96B45 105 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 PLEKHB2Q96CS7 222 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 ANKRD36BP1Q96IX9 119 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 ZNF285Q96NJ3 590 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms