RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 PRNDQ9UKY0 176 aa11.96□□□□□ -0.49
CLN3-229ENST00000567963 DBX1A6NMT0 343 aa11.95□□□□□ -0.5
CLN3-229ENST00000567963 K7EMT4 169 aa11.95□□□□□ -0.5
CLN3-229ENST00000567963 EIF4EP06730 217 aaKnown RBP11.95□□□□□ -0.5
CLN3-229ENST00000567963 ADMP35318 185 aa11.95□□□□□ -0.5
CLN3-229ENST00000567963 LAMTOR1Q6IAA8 161 aa11.95□□□□□ -0.5
CLN3-229ENST00000567963 LPCAT3Q6P1A2 487 aa11.95□□□□□ -0.5
CLN3-229ENST00000567963 GPX8Q8TED1 209 aa11.95□□□□□ -0.5
CLN3-229ENST00000567963 TSC22D3Q99576 134 aa11.95□□□□□ -0.5
CLN3-229ENST00000567963 FAM212BQ9NTI7 297 aaPredicted RBP11.95□□□□□ -0.5
CLN3-229ENST00000567963 UBQLN2Q9UHD9 624 aa11.95□□□□□ -0.5
CLN3-229ENST00000567963 TSPAN5P62079 268 aa11.95□□□□□ -0.5
CLN3-229ENST00000567963 PHLDA2Q53GA4 152 aa11.95□□□□□ -0.5
CLN3-229ENST00000567963 WFDC3Q8IUB2 231 aa11.95□□□□□ -0.5
CLN3-229ENST00000567963 UBAC2Q8NBM4 344 aa11.95□□□□□ -0.5
CLN3-229ENST00000567963 C20orf24Q9BUV8 137 aa11.95□□□□□ -0.5
CLN3-229ENST00000567963 IGHV3OR16-8A0A075B7F1 116 aa11.94□□□□□ -0.5
CLN3-229ENST00000567963 SMIM31A0A1B0GVY4 71 aa11.94□□□□□ -0.5
CLN3-229ENST00000567963 C15orf61A6NNL5 157 aa11.94□□□□□ -0.5
CLN3-229ENST00000567963 C15orf62A8K5M9 175 aa11.94□□□□□ -0.5
CLN3-229ENST00000567963 CTSGP08311 255 aa11.94□□□□□ -0.5
CLN3-229ENST00000567963 S100GP29377 79 aa11.94□□□□□ -0.5
CLN3-229ENST00000567963 RPL5P46777 297 aaKnown RBP11.94□□□□□ -0.5
CLN3-229ENST00000567963 APOC4P55056 127 aa11.94□□□□□ -0.5
CLN3-229ENST00000567963 Q56UQ5 140 aa11.94□□□□□ -0.5
CLN3-229ENST00000567963 Q6ZWC4 215 aa11.94□□□□□ -0.5
CLN3-229ENST00000567963 TBC1D26Q86UD7 250 aa11.94□□□□□ -0.5
CLN3-229ENST00000567963 OR1P1Q8NH06 330 aa11.94□□□□□ -0.5
CLN3-229ENST00000567963 SEC22AQ96IW7 307 aa11.94□□□□□ -0.5
CLN3-229ENST00000567963 CMTM3Q96MX0 182 aa11.94□□□□□ -0.5
CLN3-229ENST00000567963 COMMD3Q9UBI1 195 aa11.94□□□□□ -0.5
CLN3-229ENST00000567963 TP53TG1Q9Y2A0 90 aa11.94□□□□□ -0.5
CLN3-229ENST00000567963 ZNF207O43670 478 aaKnown RBP11.93□□□□□ -0.5
CLN3-229ENST00000567963 APOA1P02647 267 aa11.93□□□□□ -0.5
CLN3-229ENST00000567963 ODF3L2Q3SX64 289 aa11.93□□□□□ -0.5
CLN3-229ENST00000567963 SCPEP1Q9HB40 452 aa11.93□□□□□ -0.5
CLN3-229ENST00000567963 SPRY2O43597 315 aa11.92□□□□□ -0.5
CLN3-229ENST00000567963 IGKV1-39P01597 117 aa11.92□□□□□ -0.5
CLN3-229ENST00000567963 IGKV1D-39P04432 117 aa11.92□□□□□ -0.5
CLN3-229ENST00000567963 BMI1P35226 326 aa11.92□□□□□ -0.5
CLN3-229ENST00000567963 UCP3P55916 312 aa11.92□□□□□ -0.5
CLN3-229ENST00000567963 ZNF414Q96IQ9 312 aa11.92□□□□□ -0.5
CLN3-229ENST00000567963 BIRC6Q9NR09 4857 aa11.91□□□□□ -0.5
CLN3-229ENST00000567963 KIR2DL5BA0A0G2JN68 375 aa11.91□□□□□ -0.5
CLN3-229ENST00000567963 KIR2DL5BA0A0G2JPC4 375 aa11.91□□□□□ -0.5
CLN3-229ENST00000567963 A0A0J9YWU9 116 aa11.91□□□□□ -0.5
CLN3-229ENST00000567963 OR4C46A6NHA9 309 aa11.91□□□□□ -0.5
CLN3-229ENST00000567963 I3L2K1 104 aa11.91□□□□□ -0.5
CLN3-229ENST00000567963 UBE2CO00762 179 aa11.91□□□□□ -0.5
CLN3-229ENST00000567963 CTSDP07339 412 aaPredicted RBP11.91□□□□□ -0.5
CLN3-229ENST00000567963 FCGR2BP31994 310 aaPredicted RBP11.91□□□□□ -0.5
CLN3-229ENST00000567963 NCS1P62166 190 aa11.91□□□□□ -0.5
CLN3-229ENST00000567963 RELQ04864 619 aaPredicted RBP11.91□□□□□ -0.5
CLN3-229ENST00000567963 TNFRSF9Q07011 255 aa11.91□□□□□ -0.5
CLN3-229ENST00000567963 H2BFWTQ7Z2G1 175 aa11.91□□□□□ -0.5
CLN3-229ENST00000567963 SNX29P2Q8IUI4 249 aa11.91□□□□□ -0.5
CLN3-229ENST00000567963 KIR2DL5AQ8N109 375 aa11.91□□□□□ -0.5
CLN3-229ENST00000567963 OR4A16Q8NH70 328 aa11.91□□□□□ -0.5
CLN3-229ENST00000567963 KIR2DL5BQ8NHK3 375 aa11.91□□□□□ -0.5
CLN3-229ENST00000567963 OR10C1Q96KK4 312 aa11.91□□□□□ -0.5
CLN3-229ENST00000567963 FUNDC2Q9BWH2 189 aa11.91□□□□□ -0.5
CLN3-229ENST00000567963 SMPXQ9UHP9 88 aa11.91□□□□□ -0.5
CLN3-229ENST00000567963 NUPL2O15504 423 aaKnown RBP11.9□□□□□ -0.5
CLN3-229ENST00000567963 ELK1P19419 428 aa11.9□□□□□ -0.5
CLN3-229ENST00000567963 RCVRNP35243 200 aa11.9□□□□□ -0.5
CLN3-229ENST00000567963 MFAP4P55083 255 aa11.9□□□□□ -0.5
CLN3-229ENST00000567963 VBP1P61758 197 aa11.9□□□□□ -0.5
CLN3-229ENST00000567963 DEFB135Q30KP9 77 aa11.9□□□□□ -0.5
CLN3-229ENST00000567963 LYG2Q86SG7 212 aa11.9□□□□□ -0.5
CLN3-229ENST00000567963 STPG3Q8N7X2 389 aa11.9□□□□□ -0.5
CLN3-229ENST00000567963 ZNF114Q8NC26 417 aa11.9□□□□□ -0.5
CLN3-229ENST00000567963 ALMS1Q8TCU4 4167 aa11.9□□□□□ -0.5
CLN3-229ENST00000567963 MISP3Q96FF7 219 aa11.9□□□□□ -0.5
CLN3-229ENST00000567963 RNF2Q99496 336 aa11.9□□□□□ -0.5
CLN3-229ENST00000567963 TXN2Q99757 166 aa11.9□□□□□ -0.5
CLN3-229ENST00000567963 IGHV7-4-1A0A0J9YVY3 117 aa11.89□□□□□ -0.51
CLN3-229ENST00000567963 CHEK1O14757 476 aa11.89□□□□□ -0.51
CLN3-229ENST00000567963 HSPE1P61604 102 aaKnown RBP11.89□□□□□ -0.51
CLN3-229ENST00000567963 PRCDQ00LT1 54 aa11.89□□□□□ -0.51
CLN3-229ENST00000567963 EWSR1Q01844 656 aaKnown RBP eCLIP11.89□□□□□ -0.51
CLN3-229ENST00000567963 GPR141Q7Z602 305 aa11.89□□□□□ -0.51
CLN3-229ENST00000567963 TMEM116Q8NCL8 245 aa11.89□□□□□ -0.51
CLN3-229ENST00000567963 MRGPRFQ96AM1 343 aa11.89□□□□□ -0.51
CLN3-229ENST00000567963 RNF183Q96D59 192 aa11.89□□□□□ -0.51
CLN3-229ENST00000567963 GALNT14Q96FL9 552 aa11.89□□□□□ -0.51
CLN3-229ENST00000567963 RHPN1-AS1Q9BWJ2 59 aa11.89□□□□□ -0.51
CLN3-229ENST00000567963 HPGDSO60760 199 aa11.89□□□□□ -0.51
CLN3-229ENST00000567963 YIF1AO95070 293 aa11.89□□□□□ -0.51
CLN3-229ENST00000567963 MT-CO2P00403 227 aa11.89□□□□□ -0.51
CLN3-229ENST00000567963 NXF2Q9GZY0 626 aaKnown RBP11.89□□□□□ -0.51
CLN3-229ENST00000567963 MAP6D1Q9H9H5 199 aa11.89□□□□□ -0.51
CLN3-229ENST00000567963 TRAV14DV4A0A0A6YYC5 116 aa11.88□□□□□ -0.51
CLN3-229ENST00000567963 CXorf65A6NEN9 183 aa11.88□□□□□ -0.51
CLN3-229ENST00000567963 M0QYG6 137 aa11.88□□□□□ -0.51
CLN3-229ENST00000567963 IGHV3-48P01763 117 aa11.88□□□□□ -0.51
CLN3-229ENST00000567963 RPL35AP18077 110 aaKnown RBP11.88□□□□□ -0.51
CLN3-229ENST00000567963 ERHP84090 104 aaKnown RBP11.88□□□□□ -0.51
CLN3-229ENST00000567963 PMS2P11Q13670 270 aa11.88□□□□□ -0.51
CLN3-229ENST00000567963 APRG1Q8IVJ8 170 aa11.88□□□□□ -0.51
CLN3-229ENST00000567963 RBM38Q9H0Z9 239 aaKnown RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms