RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 ABCA1O95477 2261 aa11.12□□□□□ -0.63
CSPG4P11-201ENST00000560634 PROB1E7EW31 1015 aa11.12□□□□□ -0.63
CSPG4P11-201ENST00000560634 APOMO95445 188 aa11.12□□□□□ -0.63
CSPG4P11-201ENST00000560634 CD69Q07108 199 aa11.12□□□□□ -0.63
CSPG4P11-201ENST00000560634 MCM3APO60318 1980 aa11.11□□□□□ -0.63
CSPG4P11-201ENST00000560634 HIGD1CA8MV81 97 aa11.11□□□□□ -0.63
CSPG4P11-201ENST00000560634 SLC50A1Q9BRV3 221 aa11.11□□□□□ -0.63
CSPG4P11-201ENST00000560634 TRAV14DV4A0A0A6YYC5 116 aa11.11□□□□□ -0.63
CSPG4P11-201ENST00000560634 LOC101059948A0A1B0GTJ6 334 aa11.11□□□□□ -0.63
CSPG4P11-201ENST00000560634 A0A1W2PRE2 83 aa11.11□□□□□ -0.63
CSPG4P11-201ENST00000560634 RAMP1O60894 148 aa11.11□□□□□ -0.63
CSPG4P11-201ENST00000560634 LINC00271P0C7V0 271 aa11.11□□□□□ -0.63
CSPG4P11-201ENST00000560634 BEND2Q8NDZ0 799 aa11.11□□□□□ -0.63
CSPG4P11-201ENST00000560634 TMEM190Q8WZ59 177 aa11.11□□□□□ -0.63
CSPG4P11-201ENST00000560634 ARPC1AQ92747 370 aa11.11□□□□□ -0.63
CSPG4P11-201ENST00000560634 Q9H3A6 140 aa11.11□□□□□ -0.63
CSPG4P11-201ENST00000560634 MRPS18CQ9Y3D5 142 aaKnown RBP11.11□□□□□ -0.63
CSPG4P11-201ENST00000560634 MIR17HGQ75NE6 70 aa11.11□□□□□ -0.63
CSPG4P11-201ENST00000560634 ZDBF2Q9HCK1 2354 aa11.11□□□□□ -0.63
CSPG4P11-201ENST00000560634 TRBV7-9A0A0J9YWB2 115 aa11.11□□□□□ -0.63
CSPG4P11-201ENST00000560634 PF4P02776 101 aa11.11□□□□□ -0.63
CSPG4P11-201ENST00000560634 INTS1Q8N201 2190 aaKnown RBP11.11□□□□□ -0.63
CSPG4P11-201ENST00000560634 ZNF638Q14966 1978 aaKnown RBP11.11□□□□□ -0.63
CSPG4P11-201ENST00000560634 YPEL1O60688 119 aa11.1□□□□□ -0.63
CSPG4P11-201ENST00000560634 YPEL2Q96QA6 119 aa11.1□□□□□ -0.63
CSPG4P11-201ENST00000560634 HEATR5BQ9P2D3 2071 aa11.1□□□□□ -0.63
CSPG4P11-201ENST00000560634 LINC01549A6NIU2 74 aa11.1□□□□□ -0.63
CSPG4P11-201ENST00000560634 PRR19A6NJB7 356 aa11.1□□□□□ -0.63
CSPG4P11-201ENST00000560634 SERF1AO75920 110 aa11.1□□□□□ -0.63
CSPG4P11-201ENST00000560634 PSG7Q13046 419 aa11.1□□□□□ -0.63
CSPG4P11-201ENST00000560634 PVRIGQ6DKI7 326 aa11.1□□□□□ -0.63
CSPG4P11-201ENST00000560634 IQCF6A8MYZ5 107 aa11.1□□□□□ -0.63
CSPG4P11-201ENST00000560634 HAX1O00165 279 aa11.1□□□□□ -0.63
CSPG4P11-201ENST00000560634 UPK2O00526 184 aa11.1□□□□□ -0.63
CSPG4P11-201ENST00000560634 RFPL3SP0C7P2 107 aa11.1□□□□□ -0.63
CSPG4P11-201ENST00000560634 SPRED2Q7Z698 418 aa11.1□□□□□ -0.63
CSPG4P11-201ENST00000560634 FAM19A2Q8N3H0 131 aa11.1□□□□□ -0.63
CSPG4P11-201ENST00000560634 NXT2Q9NPJ8 142 aaKnown RBP11.1□□□□□ -0.63
CSPG4P11-201ENST00000560634 COL24A1Q17RW2 1714 aa11.1□□□□□ -0.63
CSPG4P11-201ENST00000560634 CACNA1DQ01668 2161 aa11.1□□□□□ -0.63
CSPG4P11-201ENST00000560634 IGKV1D-33P01593 117 aa11.1□□□□□ -0.63
CSPG4P11-201ENST00000560634 IGKV1-33P01594 117 aa11.1□□□□□ -0.63
CSPG4P11-201ENST00000560634 FAM216BQ8N7L0 139 aa11.1□□□□□ -0.63
CSPG4P11-201ENST00000560634 SNAI2O43623 268 aa11.09□□□□□ -0.63
CSPG4P11-201ENST00000560634 ZNF883P0CG24 379 aa11.09□□□□□ -0.63
CSPG4P11-201ENST00000560634 ST6GALNAC3Q8NDV1 305 aa11.09□□□□□ -0.63
CSPG4P11-201ENST00000560634 DUX3Q96PT4 197 aa11.09□□□□□ -0.63
CSPG4P11-201ENST00000560634 DERL1Q9BUN8 251 aa11.09□□□□□ -0.63
CSPG4P11-201ENST00000560634 LINC00587B1AMM8 73 aa11.09□□□□□ -0.63
CSPG4P11-201ENST00000560634 RNF126Q9BV68 326 aa11.09□□□□□ -0.63
CSPG4P11-201ENST00000560634 TRAV9-2A0A087WT02 112 aa11.09□□□□□ -0.63
CSPG4P11-201ENST00000560634 IGKV1D-43A0A0B4J1Z2 117 aa11.09□□□□□ -0.63
CSPG4P11-201ENST00000560634 IGHV2OR16-5A0A0B4J2B6 119 aa11.09□□□□□ -0.63
CSPG4P11-201ENST00000560634 F8VVB4 439 aa11.09□□□□□ -0.63
CSPG4P11-201ENST00000560634 F8VWA3 439 aa11.09□□□□□ -0.63
CSPG4P11-201ENST00000560634 MPZP25189 248 aa11.09□□□□□ -0.63
CSPG4P11-201ENST00000560634 C18orf12Q96KH6 178 aa11.09□□□□□ -0.63
CSPG4P11-201ENST00000560634 ZNF257Q9Y2Q1 563 aa11.09□□□□□ -0.63
CSPG4P11-201ENST00000560634 MYOD1P15172 320 aa11.09□□□□□ -0.63
CSPG4P11-201ENST00000560634 FDCSPQ8NFU4 85 aa11.09□□□□□ -0.63
CSPG4P11-201ENST00000560634 ST6GALNAC6Q969X2 333 aa11.09□□□□□ -0.63
CSPG4P11-201ENST00000560634 MRPL20Q9BYC9 149 aaKnown RBP11.09□□□□□ -0.63
CSPG4P11-201ENST00000560634 IGHV3-49A0A0A0MS15 119 aa11.08□□□□□ -0.64
CSPG4P11-201ENST00000560634 HBDP02042 147 aa11.08□□□□□ -0.64
CSPG4P11-201ENST00000560634 ID3Q02535 119 aa11.08□□□□□ -0.64
CSPG4P11-201ENST00000560634 ATRAIDQ6UW56 229 aa11.08□□□□□ -0.64
CSPG4P11-201ENST00000560634 ZIC4Q8N9L1 334 aa11.08□□□□□ -0.64
CSPG4P11-201ENST00000560634 TIAF1O95411 115 aa11.08□□□□□ -0.64
CSPG4P11-201ENST00000560634 CA1P00915 261 aaPredicted RBP11.08□□□□□ -0.64
CSPG4P11-201ENST00000560634 SP9P0CG40 484 aa11.08□□□□□ -0.64
CSPG4P11-201ENST00000560634 KIR3DL3Q8N743 410 aa11.08□□□□□ -0.64
CSPG4P11-201ENST00000560634 OR5A1Q8NGJ0 315 aa11.08□□□□□ -0.64
CSPG4P11-201ENST00000560634 COL5A3P25940 1745 aaPredicted RBP11.08□□□□□ -0.64
CSPG4P11-201ENST00000560634 MIA3Q5JRA6 1907 aa11.08□□□□□ -0.64
CSPG4P11-201ENST00000560634 PGPEP1LA6NFU8 196 aa11.08□□□□□ -0.64
CSPG4P11-201ENST00000560634 IFI27P40305 119 aaPredicted RBP11.08□□□□□ -0.64
CSPG4P11-201ENST00000560634 LINC01559Q495D7 138 aa11.08□□□□□ -0.64
CSPG4P11-201ENST00000560634 TRIOBPQ9H2D6 2365 aa11.08□□□□□ -0.64
CSPG4P11-201ENST00000560634 H3BUT2 72 aa11.08□□□□□ -0.64
CSPG4P11-201ENST00000560634 FGF16O43320 207 aa11.08□□□□□ -0.64
CSPG4P11-201ENST00000560634 TOMM7Q9P0U1 55 aa11.08□□□□□ -0.64
CSPG4P11-201ENST00000560634 LINC00614P0C842 121 aa11.07□□□□□ -0.64
CSPG4P11-201ENST00000560634 CFAP161Q6P656 301 aa11.07□□□□□ -0.64
CSPG4P11-201ENST00000560634 YAE1D1Q9NRH1 226 aa11.07□□□□□ -0.64
CSPG4P11-201ENST00000560634 EPDR1Q9UM22 224 aa11.07□□□□□ -0.64
CSPG4P11-201ENST00000560634 COL4A1P02462 1669 aa11.07□□□□□ -0.64
CSPG4P11-201ENST00000560634 LDLRAD4O15165 306 aa11.07□□□□□ -0.64
CSPG4P11-201ENST00000560634 LEPP41159 167 aa11.07□□□□□ -0.64
CSPG4P11-201ENST00000560634 SRSF1Q07955 248 aaKnown RBP eCLIP11.07□□□□□ -0.64
CSPG4P11-201ENST00000560634 FAM27E3Q08E93 113 aa11.07□□□□□ -0.64
CSPG4P11-201ENST00000560634 OR10J3Q5JRS4 329 aa11.07□□□□□ -0.64
CSPG4P11-201ENST00000560634 FAM89BQ8N5H3 189 aa11.07□□□□□ -0.64
CSPG4P11-201ENST00000560634 CCL19Q99731 98 aa11.07□□□□□ -0.64
CSPG4P11-201ENST00000560634 FAM90A9PA6NNJ1 464 aa11.07□□□□□ -0.64
CSPG4P11-201ENST00000560634 C15orf61A6NNL5 157 aa11.07□□□□□ -0.64
CSPG4P11-201ENST00000560634 C17orf100A8MU93 164 aa11.07□□□□□ -0.64
CSPG4P11-201ENST00000560634 ATXN7O15265 892 aaPredicted RBP11.07□□□□□ -0.64
CSPG4P11-201ENST00000560634 ORMDL2Q53FV1 153 aa11.07□□□□□ -0.64
CSPG4P11-201ENST00000560634 OR5AN1Q8NGI8 311 aa11.07□□□□□ -0.64
CSPG4P11-201ENST00000560634 LINC01560Q8TB33 94 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms