RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 TMEM88Q6PEY1 159 aa14.36□□□□□ -0.11
SNX1-208ENST00000559844 RBMS3Q6XE24 437 aaKnown RBP14.36□□□□□ -0.11
SNX1-208ENST00000559844 LY6G5BQ8NDX9 201 aa14.36□□□□□ -0.11
SNX1-208ENST00000559844 COMMD5Q9GZQ3 224 aa14.36□□□□□ -0.11
SNX1-208ENST00000559844 AMMECR1Q9Y4X0 333 aaPredicted RBP14.36□□□□□ -0.11
SNX1-208ENST00000559844 AKAP9Q99996 3911 aa14.36□□□□□ -0.11
SNX1-208ENST00000559844 ARHGAP32A7KAX9 2087 aa14.36□□□□□ -0.11
SNX1-208ENST00000559844 IGLV1-47P01700 117 aa14.36□□□□□ -0.11
SNX1-208ENST00000559844 IGHV2-5P01817 119 aa14.36□□□□□ -0.11
SNX1-208ENST00000559844 TAGLN2P37802 199 aaKnown RBP14.36□□□□□ -0.11
SNX1-208ENST00000559844 FGF8P55075 233 aaPredicted RBP14.36□□□□□ -0.11
SNX1-208ENST00000559844 CBLN2Q8IUK8 224 aa14.36□□□□□ -0.11
SNX1-208ENST00000559844 OR1L8Q8NGR8 309 aa14.36□□□□□ -0.11
SNX1-208ENST00000559844 C17orf50Q8WW18 174 aa14.36□□□□□ -0.11
SNX1-208ENST00000559844 P2RX4Q99571 388 aa14.36□□□□□ -0.11
SNX1-208ENST00000559844 A0A096LNT2 108 aa14.35□□□□□ -0.11
SNX1-208ENST00000559844 ZFP92A6NM28 416 aa14.35□□□□□ -0.11
SNX1-208ENST00000559844 INS-IGF2F8WCM5 200 aa14.35□□□□□ -0.11
SNX1-208ENST00000559844 M0R036 132 aa14.35□□□□□ -0.11
SNX1-208ENST00000559844 MYOD1P15172 320 aa14.35□□□□□ -0.11
SNX1-208ENST00000559844 LGALS7P47929 136 aa14.35□□□□□ -0.11
SNX1-208ENST00000559844 LMO4P61968 165 aa14.35□□□□□ -0.11
SNX1-208ENST00000559844 RHEBQ15382 184 aa14.35□□□□□ -0.11
SNX1-208ENST00000559844 C2orf83Q53S99 150 aa14.35□□□□□ -0.11
SNX1-208ENST00000559844 AWAT1Q58HT5 328 aa14.35□□□□□ -0.11
SNX1-208ENST00000559844 FAM122CQ6P4D5 195 aa14.35□□□□□ -0.11
SNX1-208ENST00000559844 Q8N7P7 452 aa14.35□□□□□ -0.11
SNX1-208ENST00000559844 SMCO4Q9NRQ5 59 aa14.35□□□□□ -0.11
SNX1-208ENST00000559844 VAX2Q9UIW0 290 aa14.35□□□□□ -0.11
SNX1-208ENST00000559844 TEX15Q9BXT5 2789 aa14.35□□□□□ -0.11
SNX1-208ENST00000559844 A0A1W2PN81 502 aa14.34□□□□□ -0.11
SNX1-208ENST00000559844 ATF4P18848 351 aaPredicted RBP14.34□□□□□ -0.11
SNX1-208ENST00000559844 CHRNA7P36544 502 aa14.34□□□□□ -0.11
SNX1-208ENST00000559844 MAPK1IP1LQ8NDC0 245 aa14.34□□□□□ -0.11
SNX1-208ENST00000559844 SLC25A22Q9H936 323 aa14.34□□□□□ -0.11
SNX1-208ENST00000559844 FLNAP21333 2647 aaKnown RBP14.34□□□□□ -0.11
SNX1-208ENST00000559844 RAB31Q13636 194 aa14.34□□□□□ -0.11
SNX1-208ENST00000559844 RPS10P5Q9NQ39 176 aa14.34□□□□□ -0.11
SNX1-208ENST00000559844 NDUFA4L2Q9NRX3 87 aa14.34□□□□□ -0.11
SNX1-208ENST00000559844 TET2Q6N021 2002 aaPredicted RBP14.34□□□□□ -0.11
SNX1-208ENST00000559844 BUB1B-PAK6H3BSN5 160 aa14.33□□□□□ -0.12
SNX1-208ENST00000559844 IGLV2-23P01705 113 aa14.33□□□□□ -0.12
SNX1-208ENST00000559844 CDC34P49427 236 aaPredicted RBP14.33□□□□□ -0.12
SNX1-208ENST00000559844 ERHP84090 104 aaKnown RBP14.33□□□□□ -0.12
SNX1-208ENST00000559844 LOXL1Q08397 574 aaPredicted RBP14.33□□□□□ -0.12
SNX1-208ENST00000559844 BSXQ3C1V8 233 aa14.33□□□□□ -0.12
SNX1-208ENST00000559844 TEPPQ6URK8 271 aa14.33□□□□□ -0.12
SNX1-208ENST00000559844 CYB561D1Q8N8Q1 229 aa14.33□□□□□ -0.12
SNX1-208ENST00000559844 MGST2Q99735 147 aa14.33□□□□□ -0.12
SNX1-208ENST00000559844 GGTLC1Q9BX51 225 aa14.33□□□□□ -0.12
SNX1-208ENST00000559844 ONECUT1Q9UBC0 465 aa14.33□□□□□ -0.12
SNX1-208ENST00000559844 LSM4Q9Y4Z0 139 aaKnown RBP14.33□□□□□ -0.12
SNX1-208ENST00000559844 OTOGQ6ZRI0 2925 aa14.33□□□□□ -0.12
SNX1-208ENST00000559844 WNK2Q9Y3S1 2297 aa14.33□□□□□ -0.12
SNX1-208ENST00000559844 C7orf77A4D0Y5 90 aa14.33□□□□□ -0.12
SNX1-208ENST00000559844 SEC14L6B5MCN3 397 aa14.33□□□□□ -0.12
SNX1-208ENST00000559844 OPN1MWP04001 364 aa14.33□□□□□ -0.12
SNX1-208ENST00000559844 SNRNP70P08621 437 aaKnown RBP14.33□□□□□ -0.12
SNX1-208ENST00000559844 OPN1MW2P0DN77 364 aa14.33□□□□□ -0.12
SNX1-208ENST00000559844 OPN1MW3P0DN78 364 aa14.33□□□□□ -0.12
SNX1-208ENST00000559844 AKIRIN2Q53H80 203 aa14.33□□□□□ -0.12
SNX1-208ENST00000559844 ARSJQ5FYB0 599 aaPredicted RBP14.33□□□□□ -0.12
SNX1-208ENST00000559844 RAB24Q969Q5 203 aa14.33□□□□□ -0.12
SNX1-208ENST00000559844 SSBP3Q9BWW4 388 aaPredicted RBP14.33□□□□□ -0.12
SNX1-208ENST00000559844 MANBALQ9NQG1 85 aa14.33□□□□□ -0.12
SNX1-208ENST00000559844 NDUFS6O75380 124 aaKnown RBP14.32□□□□□ -0.12
SNX1-208ENST00000559844 TEX45Q8NA69 505 aa14.32□□□□□ -0.12
SNX1-208ENST00000559844 INSIG2Q9Y5U4 225 aa14.32□□□□□ -0.12
SNX1-208ENST00000559844 PUS1Q9Y606 427 aaKnown RBP eCLIP14.32□□□□□ -0.12
SNX1-208ENST00000559844 PXMP4Q9Y6I8 212 aa14.32□□□□□ -0.12
SNX1-208ENST00000559844 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.31□□□□□ -0.129e-7■■■■□ 23.5
SNX1-208ENST00000559844 LOC105371267A0A1B0GV96 52 aa14.31□□□□□ -0.12
SNX1-208ENST00000559844 M0R1W7 72 aa14.31□□□□□ -0.12
SNX1-208ENST00000559844 ENSAO43768 121 aaKnown RBP14.31□□□□□ -0.12
SNX1-208ENST00000559844 PAX6P26367 422 aa14.31□□□□□ -0.12
SNX1-208ENST00000559844 CEBPGP53567 150 aa14.31□□□□□ -0.12
SNX1-208ENST00000559844 TMEM249Q2WGJ8 235 aa14.31□□□□□ -0.12
SNX1-208ENST00000559844 CIARTQ8N365 385 aaPredicted RBP14.31□□□□□ -0.12
SNX1-208ENST00000559844 TUBA4BQ9H853 241 aa14.31□□□□□ -0.12
SNX1-208ENST00000559844 LOC105371242A0A075B767 164 aa14.31□□□□□ -0.12
SNX1-208ENST00000559844 IGHV1-3A0A0C4DH29 117 aa14.31□□□□□ -0.12
SNX1-208ENST00000559844 A0A1W2PPV4 95 aa14.31□□□□□ -0.12
SNX1-208ENST00000559844 C22orf46C9J442 243 aa14.31□□□□□ -0.12
SNX1-208ENST00000559844 H3BQ15 152 aa14.31□□□□□ -0.12
SNX1-208ENST00000559844 FBP1P09467 338 aa14.31□□□□□ -0.12
SNX1-208ENST00000559844 RNASE2P10153 161 aaKnown RBP14.31□□□□□ -0.12
SNX1-208ENST00000559844 COX7A1P24310 79 aa14.31□□□□□ -0.12
SNX1-208ENST00000559844 PSMB3P49720 205 aa14.31□□□□□ -0.12
SNX1-208ENST00000559844 RPEQ96AT9 228 aa14.31□□□□□ -0.12
SNX1-208ENST00000559844 NIPSNAP3BQ9BS92 247 aa14.31□□□□□ -0.12
SNX1-208ENST00000559844 SMAD7O15105 426 aaKnown RBP14.3□□□□□ -0.12
SNX1-208ENST00000559844 LCN2P80188 198 aa14.3□□□□□ -0.12
SNX1-208ENST00000559844 MOB3BQ86TA1 216 aa14.3□□□□□ -0.12
SNX1-208ENST00000559844 MRPL41Q8IXM3 137 aaKnown RBP14.3□□□□□ -0.12
SNX1-208ENST00000559844 C15orf54Q8N8G6 183 aa14.3□□□□□ -0.12
SNX1-208ENST00000559844 OR4P4Q8NGL7 312 aa14.3□□□□□ -0.12
SNX1-208ENST00000559844 C20orf24Q9BUV8 137 aa14.3□□□□□ -0.12
SNX1-208ENST00000559844 ZNF430Q9H8G1 570 aaPredicted RBP14.3□□□□□ -0.12
SNX1-208ENST00000559844 LPAR2Q9HBW0 351 aa14.3□□□□□ -0.12
SNX1-208ENST00000559844 CELSR1Q9NYQ6 3014 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms