RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 NDUFB8O95169 186 aa8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 IGHV3-23P01764 117 aa8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 HLA-AP01891 365 aaKnown RBP8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 HOXA1P49639 335 aaPredicted RBP8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 SLURP1P55000 103 aa8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 UBE2MP61081 183 aaKnown RBP8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 ERHP84090 104 aaKnown RBP8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 ANKRD55Q3KP44 614 aa8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 Q6ZRM9 215 aa8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 WFDC9Q8NEX5 89 aa8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 FANCD2OSQ96PS1 177 aa8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 C20orf85Q9H1P6 137 aa8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 RANGRFQ9HD47 186 aaPredicted RBP8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 THYN1Q9P016 225 aa8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 PEF1Q9UBV8 284 aaKnown RBP8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 SHPKQ9UHJ6 478 aa8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 IGLV11-55A0A075B6I3 123 aa8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 C9orf170A2RU37 121 aa8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 G3V4G9 280 aa8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 TCRBP04435 133 aa8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 OR4E1P0C645 316 aa8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 SULT1A3P0DMM9 295 aa8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 SULT1A4P0DMN0 295 aa8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 SNCAP37840 140 aa8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 ASAH1Q13510 395 aa8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 FHL3Q13643 280 aa8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 OXLD1Q5BKU9 147 aa8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 ZNF343Q6P1L6 599 aa8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 OR2C3Q8N628 320 aa8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 OR1S1Q8NH92 325 aa8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 COQ8AQ8NI60 647 aa8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 DCUN1D4Q92564 292 aa8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 EEF1AKMT3Q96AZ1 226 aa8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 RCC1LQ96I51 464 aaKnown RBP8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 MCRIP2Q9BUT9 160 aaKnown RBP8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 TBC1D24Q9ULP9 559 aa8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 F11RQ9Y624 299 aaKnown RBP8.84□□□□□ -0.99
CCDC88C-212ENST00000556767 IGHV3-21A0A0B4J1V1 117 aa8.83□□□□□ -1
CCDC88C-212ENST00000556767 CEBPZOSA8MTT3 80 aa8.83□□□□□ -1
CCDC88C-212ENST00000556767 TRBV12-3P01733 135 aa8.83□□□□□ -1
CCDC88C-212ENST00000556767 HOXB5P09067 269 aa8.83□□□□□ -1
CCDC88C-212ENST00000556767 ZP3P21754 424 aa8.83□□□□□ -1
CCDC88C-212ENST00000556767 HOXD3P31249 432 aaPredicted RBP8.83□□□□□ -1
CCDC88C-212ENST00000556767 SPCS3P61009 180 aa8.83□□□□□ -1
CCDC88C-212ENST00000556767 DHRS2Q13268 280 aa8.83□□□□□ -1
CCDC88C-212ENST00000556767 SMCO1Q147U7 214 aa8.83□□□□□ -1
CCDC88C-212ENST00000556767 CLEC19AQ6UXS0 136 aa8.83□□□□□ -1
CCDC88C-212ENST00000556767 LYG2Q86SG7 212 aa8.83□□□□□ -1
CCDC88C-212ENST00000556767 OR1L6Q8NGR2 347 aa8.83□□□□□ -1
CCDC88C-212ENST00000556767 ENKURQ8TC29 256 aa8.83□□□□□ -1
CCDC88C-212ENST00000556767 MISP3Q96FF7 219 aa8.83□□□□□ -1
CCDC88C-212ENST00000556767 CXorf58Q96LI9 332 aa8.83□□□□□ -1
CCDC88C-212ENST00000556767 NUDT15Q9NV35 164 aa8.83□□□□□ -1
CCDC88C-212ENST00000556767 DMRT1Q9Y5R6 373 aa8.83□□□□□ -1
CCDC88C-212ENST00000556767 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.82□□□□□ -1
CCDC88C-212ENST00000556767 DUXBA0A1W2PPF3 345 aa8.82□□□□□ -1
CCDC88C-212ENST00000556767 MFSD2BA6NFX1 497 aa8.82□□□□□ -1
CCDC88C-212ENST00000556767 SEC14L6B5MCN3 397 aa8.82□□□□□ -1
CCDC88C-212ENST00000556767 OVOL1O14753 267 aa8.82□□□□□ -1
CCDC88C-212ENST00000556767 DUS4LO95620 317 aaKnown RBP8.82□□□□□ -1
CCDC88C-212ENST00000556767 H2AFB2P0C5Z0 115 aa8.82□□□□□ -1
CCDC88C-212ENST00000556767 MFAP2P55001 183 aa8.82□□□□□ -1
CCDC88C-212ENST00000556767 DEFA1P59665 94 aa8.82□□□□□ -1
CCDC88C-212ENST00000556767 DEFA3P59666 94 aa8.82□□□□□ -1
CCDC88C-212ENST00000556767 IFITM3Q01628 133 aa8.82□□□□□ -1
CCDC88C-212ENST00000556767 RPEL1Q2QD12 228 aa8.82□□□□□ -1
CCDC88C-212ENST00000556767 NMSQ5H8A3 153 aa8.82□□□□□ -1
CCDC88C-212ENST00000556767 LRTM2Q8N967 370 aa8.82□□□□□ -1
CCDC88C-212ENST00000556767 OR52B4Q8NGK2 314 aa8.82□□□□□ -1
CCDC88C-212ENST00000556767 OR1P1Q8NH06 330 aa8.82□□□□□ -1
CCDC88C-212ENST00000556767 OR52E5Q8NH55 327 aa8.82□□□□□ -1
CCDC88C-212ENST00000556767 DLX4Q92988 240 aaPredicted RBP8.82□□□□□ -1
CCDC88C-212ENST00000556767 PINX1Q96BK5 328 aaKnown RBP8.82□□□□□ -1
CCDC88C-212ENST00000556767 HEYLQ9NQ87 328 aaPredicted RBP8.82□□□□□ -1
CCDC88C-212ENST00000556767 TMED3Q9Y3Q3 217 aa8.82□□□□□ -1
CCDC88C-212ENST00000556767 ANK2Q01484 3957 aa8.81□□□□□ -1
CCDC88C-212ENST00000556767 A0A1B0GU03 582 aa8.81□□□□□ -1
CCDC88C-212ENST00000556767 PPP5D1E7EU14 171 aa8.81□□□□□ -1
CCDC88C-212ENST00000556767 IFNA21P01568 189 aa8.81□□□□□ -1
CCDC88C-212ENST00000556767 ARL3P36405 182 aa8.81□□□□□ -1
CCDC88C-212ENST00000556767 SUB1P53999 127 aaKnown RBP eCLIP8.81□□□□□ -1
CCDC88C-212ENST00000556767 TATDN3Q17R31 274 aa8.81□□□□□ -1
CCDC88C-212ENST00000556767 FAM209BQ5JX69 171 aa8.81□□□□□ -1
CCDC88C-212ENST00000556767 SAMD5Q5TGI4 173 aa8.81□□□□□ -1
CCDC88C-212ENST00000556767 GGNBP1Q5YKI7 109 aa8.81□□□□□ -1
CCDC88C-212ENST00000556767 UBAC2Q8NBM4 344 aa8.81□□□□□ -1
CCDC88C-212ENST00000556767 GPR61Q9BZJ8 451 aa8.81□□□□□ -1
CCDC88C-212ENST00000556767 HIPK2Q9H2X6 1198 aa8.81□□□□□ -1
CCDC88C-212ENST00000556767 ZC4H2Q9NQZ6 224 aa8.81□□□□□ -1
CCDC88C-212ENST00000556767 CACFD1Q9UGQ2 172 aa8.81□□□□□ -1
CCDC88C-212ENST00000556767 TRBV7-1A0A0A6YYK4 115 aa8.8□□□□□ -1
CCDC88C-212ENST00000556767 GGCTO75223 188 aaKnown RBP8.8□□□□□ -1
CCDC88C-212ENST00000556767 ADAP1O75689 374 aa8.8□□□□□ -1
CCDC88C-212ENST00000556767 CLEC3BP05452 202 aa8.8□□□□□ -1
CCDC88C-212ENST00000556767 GPR183P32249 361 aa8.8□□□□□ -1
CCDC88C-212ENST00000556767 SYNJ2BPP57105 145 aa8.8□□□□□ -1
CCDC88C-212ENST00000556767 KLK9Q2XQG4 91 aa8.8□□□□□ -1
CCDC88C-212ENST00000556767 AARDQ4LEZ3 155 aa8.8□□□□□ -1
CCDC88C-212ENST00000556767 Q56UQ5 140 aa8.8□□□□□ -1
CCDC88C-212ENST00000556767 C9orf66Q5T8R8 295 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms