RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 KIR3DL3Q8N743 410 aa12.31□□□□□ -0.44
CUX1-215ENST00000556210 C2orf88Q9BSF0 95 aa12.31□□□□□ -0.44
CUX1-215ENST00000556210 SSBP3Q9BWW4 388 aaPredicted RBP12.31□□□□□ -0.44
CUX1-215ENST00000556210 ZNF331Q9NQX6 463 aaPredicted RBP12.31□□□□□ -0.44
CUX1-215ENST00000556210 PIEZO1Q92508 2521 aa12.31□□□□□ -0.44
CUX1-215ENST00000556210 IL3RAP26951 378 aa12.31□□□□□ -0.44
CUX1-215ENST00000556210 ZNF726P1Q15940 193 aa12.31□□□□□ -0.44
CUX1-215ENST00000556210 ASPHD1Q5U4P2 390 aa12.31□□□□□ -0.44
CUX1-215ENST00000556210 OR1L6Q8NGR2 347 aa12.31□□□□□ -0.44
CUX1-215ENST00000556210 LPAR2Q9HBW0 351 aa12.31□□□□□ -0.44
CUX1-215ENST00000556210 IGHV3-35A0A0C4DH35 117 aa12.31□□□□□ -0.44
CUX1-215ENST00000556210 HELTA6NFD8 242 aa12.31□□□□□ -0.44
CUX1-215ENST00000556210 CD82P27701 267 aa12.31□□□□□ -0.44
CUX1-215ENST00000556210 HNRNPA3P51991 378 aaKnown RBP12.31□□□□□ -0.44
CUX1-215ENST00000556210 TIMM23BQ5SRD1 257 aa12.31□□□□□ -0.44
CUX1-215ENST00000556210 FAM90A26D6RGX4 464 aa12.3□□□□□ -0.44
CUX1-215ENST00000556210 SUB1P53999 127 aaKnown RBP eCLIP12.3□□□□□ -0.44
CUX1-215ENST00000556210 PQLC2Q6ZP29 291 aa12.3□□□□□ -0.44
CUX1-215ENST00000556210 M0QZK8 103 aa12.3□□□□□ -0.44
CUX1-215ENST00000556210 GGCTO75223 188 aaKnown RBP12.3□□□□□ -0.44
CUX1-215ENST00000556210 ZNF253O75346 499 aa12.3□□□□□ -0.44
CUX1-215ENST00000556210 RAB4AP20338 218 aa12.3□□□□□ -0.44
CUX1-215ENST00000556210 NUTF2P61970 127 aaKnown RBP12.3□□□□□ -0.44
CUX1-215ENST00000556210 OR8I2Q8N0Y5 310 aa12.3□□□□□ -0.44
CUX1-215ENST00000556210 TMEM256Q8N2U0 113 aa12.3□□□□□ -0.44
CUX1-215ENST00000556210 CORO2AQ92828 525 aa12.3□□□□□ -0.44
CUX1-215ENST00000556210 RPEQ96AT9 228 aa12.3□□□□□ -0.44
CUX1-215ENST00000556210 HSPB7Q9UBY9 170 aa12.3□□□□□ -0.44
CUX1-215ENST00000556210 JPT1Q9UK76 154 aa12.3□□□□□ -0.44
CUX1-215ENST00000556210 PTPN13Q12923 2485 aa12.3□□□□□ -0.44
CUX1-215ENST00000556210 ZNF714Q96N38 554 aa12.3□□□□□ -0.44
CUX1-215ENST00000556210 A0A1B0GUS0 222 aa12.29□□□□□ -0.44
CUX1-215ENST00000556210 TCF21O43680 179 aa12.29□□□□□ -0.44
CUX1-215ENST00000556210 MOSP00540 346 aa12.29□□□□□ -0.44
CUX1-215ENST00000556210 SLC25A5P05141 298 aaKnown RBP12.29□□□□□ -0.44
CUX1-215ENST00000556210 MAS1LP35410 378 aa12.29□□□□□ -0.44
CUX1-215ENST00000556210 LYZP61626 148 aa12.29□□□□□ -0.44
CUX1-215ENST00000556210 NPIPB3Q92617 1050 aa12.29□□□□□ -0.44
CUX1-215ENST00000556210 LY6HO94772 140 aa12.29□□□□□ -0.44
CUX1-215ENST00000556210 CXorf1O96002 111 aa12.29□□□□□ -0.44
CUX1-215ENST00000556210 LINC00869P0C866 280 aa12.29□□□□□ -0.44
CUX1-215ENST00000556210 LGALS4P56470 323 aa12.29□□□□□ -0.44
CUX1-215ENST00000556210 Q6ZN92 141 aa12.29□□□□□ -0.44
CUX1-215ENST00000556210 MIR17HGQ75NE6 70 aa12.29□□□□□ -0.44
CUX1-215ENST00000556210 PFN1P07737 140 aaKnown RBP12.29□□□□□ -0.44
CUX1-215ENST00000556210 IL6RP08887 468 aaPredicted RBP12.29□□□□□ -0.44
CUX1-215ENST00000556210 OR5B3Q8NH48 314 aa12.29□□□□□ -0.44
CUX1-215ENST00000556210 INSIG2Q9Y5U4 225 aa12.29□□□□□ -0.44
CUX1-215ENST00000556210 OR2T6Q8NHC8 308 aa12.28□□□□□ -0.44
CUX1-215ENST00000556210 GP6Q9HCN6 339 aa12.28□□□□□ -0.44
CUX1-215ENST00000556210 SEPSECSQ9HD40 501 aaKnown RBP12.28□□□□□ -0.44
CUX1-215ENST00000556210 SLC45A2Q9UMX9 530 aa12.28□□□□□ -0.44
CUX1-215ENST00000556210 A6NNC1 897 aa12.28□□□□□ -0.44
CUX1-215ENST00000556210 IFNL4K9M1U5 179 aa12.28□□□□□ -0.44
CUX1-215ENST00000556210 IGKV1-16P04430 117 aa12.28□□□□□ -0.44
CUX1-215ENST00000556210 GNB2P62879 340 aa12.28□□□□□ -0.44
CUX1-215ENST00000556210 HLA-DRB5Q30154 266 aa12.28□□□□□ -0.44
CUX1-215ENST00000556210 VMA21Q3ZAQ7 101 aa12.28□□□□□ -0.44
CUX1-215ENST00000556210 CT45A1Q5HYN5 189 aa12.28□□□□□ -0.44
CUX1-215ENST00000556210 CT45A3Q8NHU0 189 aa12.28□□□□□ -0.44
CUX1-215ENST00000556210 MRPL20Q9BYC9 149 aaKnown RBP12.28□□□□□ -0.44
CUX1-215ENST00000556210 IDI2-AS1Q9NZ38 188 aa12.28□□□□□ -0.44
CUX1-215ENST00000556210 ZNF134P52741 427 aa12.28□□□□□ -0.44
CUX1-215ENST00000556210 OR9G1Q8NH87 305 aa12.28□□□□□ -0.44
CUX1-215ENST00000556210 NEUROG1Q92886 237 aa12.28□□□□□ -0.44
CUX1-215ENST00000556210 SFRP2Q96HF1 295 aa12.28□□□□□ -0.44
CUX1-215ENST00000556210 NABP2Q9BQ15 211 aa12.28□□□□□ -0.44
CUX1-215ENST00000556210 VPS25Q9BRG1 176 aa12.28□□□□□ -0.44
CUX1-215ENST00000556210 MRPL18Q9H0U6 180 aaKnown RBP12.28□□□□□ -0.44
CUX1-215ENST00000556210 PRNDQ9UKY0 176 aa12.28□□□□□ -0.44
CUX1-215ENST00000556210 KBTBD11-OT1A0A1B0GTJ5 212 aa12.27□□□□□ -0.44
CUX1-215ENST00000556210 SRRM5B3KS81 715 aa12.27□□□□□ -0.44
CUX1-215ENST00000556210 DIRC3C9JPN6 131 aa12.27□□□□□ -0.44
CUX1-215ENST00000556210 HSBP1O75506 76 aa12.27□□□□□ -0.44
CUX1-215ENST00000556210 FOXH1O75593 365 aa12.27□□□□□ -0.44
CUX1-215ENST00000556210 IGKV3-15P01624 115 aa12.27□□□□□ -0.44
CUX1-215ENST00000556210 RPEL1Q2QD12 228 aa12.27□□□□□ -0.44
CUX1-215ENST00000556210 IGHV3OR16-8A0A075B7F1 116 aa12.27□□□□□ -0.44
CUX1-215ENST00000556210 IGHV1-46P01743 117 aa12.27□□□□□ -0.44
CUX1-215ENST00000556210 COL8A2P25067 703 aa12.27□□□□□ -0.44
CUX1-215ENST00000556210 RPL8P62917 257 aaKnown RBP12.27□□□□□ -0.44
CUX1-215ENST00000556210 PRR30Q53SZ7 412 aaPredicted RBP12.27□□□□□ -0.44
CUX1-215ENST00000556210 MBNL3Q9NUK0 354 aaKnown RBP12.27□□□□□ -0.44
CUX1-215ENST00000556210 SLC25A15Q9Y619 301 aa12.27□□□□□ -0.44
CUX1-215ENST00000556210 MMP23AO75900 390 aa12.27□□□□□ -0.45
CUX1-215ENST00000556210 VENTXO95231 258 aa12.27□□□□□ -0.45
CUX1-215ENST00000556210 PLA2G2CQ5R387 149 aa12.27□□□□□ -0.45
CUX1-215ENST00000556210 PLSCR4Q9NRQ2 329 aa12.27□□□□□ -0.45
CUX1-215ENST00000556210 CHD3Q12873 2000 aaKnown RBP12.27□□□□□ -0.45
CUX1-215ENST00000556210 LOC400499M0QZD8 3231 aa12.27□□□□□ -0.45
CUX1-215ENST00000556210 LCN2P80188 198 aa12.27□□□□□ -0.45
CUX1-215ENST00000556210 TMEM14EPQ6UXP3 125 aa12.27□□□□□ -0.45
CUX1-215ENST00000556210 PRO3102Q9H379 93 aa12.27□□□□□ -0.45
CUX1-215ENST00000556210 CD3EP07766 207 aa12.26□□□□□ -0.45
CUX1-215ENST00000556210 PTTG1IPP53801 180 aa12.26□□□□□ -0.45
CUX1-215ENST00000556210 ERVK11-1P61568 191 aa12.26□□□□□ -0.45
CUX1-215ENST00000556210 ARF6P62330 175 aa12.26□□□□□ -0.45
CUX1-215ENST00000556210 COTL1Q14019 142 aa12.26□□□□□ -0.45
CUX1-215ENST00000556210 TREML4Q6UXN2 200 aa12.26□□□□□ -0.45
CUX1-215ENST00000556210 C11orf42Q8N5U0 333 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms