RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 BRD3OSQ6XYD6 125 aa4□□□□□ -1.77
VTI1B-202ENST00000553619 SPNS3Q6ZMD2 512 aa4□□□□□ -1.77
VTI1B-202ENST00000553619 ACOT7LQ6ZUV0 252 aa4□□□□□ -1.77
VTI1B-202ENST00000553619 PPP1R27Q86WC6 154 aa4□□□□□ -1.77
VTI1B-202ENST00000553619 CCDC28AQ8IWP9 274 aa4□□□□□ -1.77
VTI1B-202ENST00000553619 OR1L6Q8NGR2 347 aa4□□□□□ -1.77
VTI1B-202ENST00000553619 DCUN1D4Q92564 292 aa4□□□□□ -1.77
VTI1B-202ENST00000553619 SMIM8Q96KF7 97 aa4□□□□□ -1.77
VTI1B-202ENST00000553619 TMEM68Q96MH6 324 aa4□□□□□ -1.77
VTI1B-202ENST00000553619 SRSF8Q9BRL6 282 aaKnown RBP4□□□□□ -1.77
VTI1B-202ENST00000553619 MFFQ9GZY8 342 aa4□□□□□ -1.77
VTI1B-202ENST00000553619 HEYLQ9NQ87 328 aaPredicted RBP4□□□□□ -1.77
VTI1B-202ENST00000553619 PSENENQ9NZ42 101 aa4□□□□□ -1.77
VTI1B-202ENST00000553619 METTL1Q9UBP6 276 aaKnown RBP4□□□□□ -1.77
VTI1B-202ENST00000553619 HSPB7Q9UBY9 170 aa4□□□□□ -1.77
VTI1B-202ENST00000553619 FOXA2Q9Y261 457 aaPredicted RBP4□□□□□ -1.77
VTI1B-202ENST00000553619 RCL1Q9Y2P8 373 aaKnown RBP4□□□□□ -1.77
VTI1B-202ENST00000553619 SIGLEC9Q9Y336 463 aa4□□□□□ -1.77
VTI1B-202ENST00000553619 OR51B2Q9Y5P1 312 aa4□□□□□ -1.77
VTI1B-202ENST00000553619 WSB1Q9Y6I7 421 aa4□□□□□ -1.77
VTI1B-202ENST00000553619 U3KQ87 197 aa4□□□□□ -1.77
VTI1B-202ENST00000553619 ANKRD17O75179 2603 aaKnown RBP4□□□□□ -1.77
VTI1B-202ENST00000553619 ABCA1O95477 2261 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 IGHV3OR16-10A0A075B7F0 116 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 FXYD6-FXYD2A0A087WZ82 144 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 A0A0G2JRQ6 117 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 A0A0U1RQK1 487 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 TEX50A0A1B0GTY4 177 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 INS-IGF2F8WCM5 200 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 FGF16O43320 207 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 SLC25A17O43808 307 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 IFNA10P01566 189 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 IGLV2-23P01705 113 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 CRYGBP07316 175 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 RPL12P30050 165 aaKnown RBP3.99□□□□□ -1.77
VTI1B-202ENST00000553619 SNCAP37840 140 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 RPL27AP46776 148 aaKnown RBP3.99□□□□□ -1.77
VTI1B-202ENST00000553619 HOXA1P49639 335 aaPredicted RBP3.99□□□□□ -1.77
VTI1B-202ENST00000553619 RAB14P61106 215 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 POLR2GP62487 172 aaKnown RBP eCLIP3.99□□□□□ -1.77
VTI1B-202ENST00000553619 HBG1P69891 147 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 HBG2P69892 147 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 PRCDQ00LT1 54 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 HNF4GQ14541 408 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 TNXAQ16473 311 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 PRSS8Q16651 343 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 ATP6V1FQ16864 119 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 C5orf64Q2M2E5 130 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 PDLIM3Q53GG5 364 aaPredicted RBP3.99□□□□□ -1.77
VTI1B-202ENST00000553619 CXorf66Q5JRM2 361 aaPredicted RBP3.99□□□□□ -1.77
VTI1B-202ENST00000553619 KLF17Q5JT82 389 aaPredicted RBP3.99□□□□□ -1.77
VTI1B-202ENST00000553619 FAM120AOSQ5T036 256 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 RUSC1-AS1Q66K80 236 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 ZNF562Q6V9R5 426 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 VKORC1L1Q8N0U8 176 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 DYNAPQ8N1N2 210 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 CIARTQ8N365 385 aaPredicted RBP3.99□□□□□ -1.77
VTI1B-202ENST00000553619 OR2C3Q8N628 320 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 TMEM86BQ8N661 226 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 DTD1Q8TEA8 209 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 SSMEM1Q8WWF3 244 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 LINC00476Q8WZB0 136 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 SLC25A33Q9BSK2 321 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 RNF126Q9BV68 326 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 HINT2Q9BX68 163 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 QTRT1Q9BXR0 403 aaKnown RBP3.99□□□□□ -1.77
VTI1B-202ENST00000553619 GON7Q9BXV9 100 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 FBXL15Q9H469 300 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 RBKSQ9H477 322 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 PRDM13Q9H4Q3 707 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 PLEKHA3Q9HB20 300 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 TMEM14BQ9NUH8 114 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 TNFSF18Q9UNG2 199 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 TCF19Q9Y242 345 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 STRAPQ9Y3F4 350 aaKnown RBP3.99□□□□□ -1.77
VTI1B-202ENST00000553619 CBY1Q9Y3M2 126 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 HELZ2Q9BYK8 2649 aaKnown RBP3.99□□□□□ -1.77
VTI1B-202ENST00000553619 PTPN13Q12923 2485 aa3.99□□□□□ -1.77
VTI1B-202ENST00000553619 KALRNO60229 2985 aa3.98□□□□□ -1.77
VTI1B-202ENST00000553619 TRAV14DV4A0A0A6YYC5 116 aa3.98□□□□□ -1.77
VTI1B-202ENST00000553619 BORCS7-ASMTA0A0B4J1R7 106 aa3.98□□□□□ -1.77
VTI1B-202ENST00000553619 TRAV3A0A0B4J244 114 aa3.98□□□□□ -1.77
VTI1B-202ENST00000553619 KANTRA0A1W2PQU2 76 aa3.98□□□□□ -1.77
VTI1B-202ENST00000553619 H3BUX3 64 aa3.98□□□□□ -1.77
VTI1B-202ENST00000553619 ARPC5O15511 151 aa3.98□□□□□ -1.77
VTI1B-202ENST00000553619 KCNAB3O43448 404 aa3.98□□□□□ -1.77
VTI1B-202ENST00000553619 GATCO43716 136 aaKnown RBP3.98□□□□□ -1.77
VTI1B-202ENST00000553619 SSSCA1O60232 199 aa3.98□□□□□ -1.77
VTI1B-202ENST00000553619 DFFBO76075 338 aa3.98□□□□□ -1.77
VTI1B-202ENST00000553619 OR8U8P0C7N1 319 aa3.98□□□□□ -1.77
VTI1B-202ENST00000553619 EGR2P11161 476 aaPredicted RBP3.98□□□□□ -1.77
VTI1B-202ENST00000553619 S100A11P31949 105 aa3.98□□□□□ -1.77
VTI1B-202ENST00000553619 HTR2BP41595 481 aa3.98□□□□□ -1.77
VTI1B-202ENST00000553619 IER3P46695 156 aa3.98□□□□□ -1.77
VTI1B-202ENST00000553619 CAV2P51636 162 aa3.98□□□□□ -1.77
VTI1B-202ENST00000553619 SRSF2Q01130 221 aaKnown RBP3.98□□□□□ -1.77
VTI1B-202ENST00000553619 BAXQ07812 192 aa3.98□□□□□ -1.77
VTI1B-202ENST00000553619 ZNF345Q14585 488 aa3.98□□□□□ -1.77
VTI1B-202ENST00000553619 FXYD3Q14802 87 aa3.98□□□□□ -1.77
VTI1B-202ENST00000553619 IZUMO4Q1ZYL8 232 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms