RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 SLC7A6Q92536 515 aa2.55□□□□□ -2
LIMA1-208ENST00000551691 GHSRQ92847 366 aa2.55□□□□□ -2
LIMA1-208ENST00000551691 MRPL48Q96GC5 212 aaKnown RBP2.55□□□□□ -2
LIMA1-208ENST00000551691 RNF185Q96GF1 192 aa2.55□□□□□ -2
LIMA1-208ENST00000551691 RSG1Q9BU20 258 aa2.55□□□□□ -2
LIMA1-208ENST00000551691 NXF2Q9GZY0 626 aaKnown RBP2.55□□□□□ -2
LIMA1-208ENST00000551691 C12orf4Q9NQ89 552 aa2.55□□□□□ -2
LIMA1-208ENST00000551691 USE1Q9NZ43 259 aa2.55□□□□□ -2
LIMA1-208ENST00000551691 COMMD9Q9P000 198 aa2.55□□□□□ -2
LIMA1-208ENST00000551691 ENOPH1Q9UHY7 261 aa2.55□□□□□ -2
LIMA1-208ENST00000551691 SIGLEC7Q9Y286 467 aa2.55□□□□□ -2
LIMA1-208ENST00000551691 SNX24Q9Y343 169 aa2.55□□□□□ -2
LIMA1-208ENST00000551691 MUC2Q02817 5179 aa2.55□□□□□ -2
LIMA1-208ENST00000551691 SMIM23A6NLE4 172 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 C16orf90A8MZG2 172 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 MIF4GDA9UHW6 222 aaKnown RBP2.54□□□□□ -2
LIMA1-208ENST00000551691 CENPBD1B2RD01 187 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 C11orf94C9JXX5 98 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 M0QXV9 152 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 UPK2O00526 184 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 MT-ND4P03905 459 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 RLN2P04090 185 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 CDK1P06493 297 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 ZNF688P0C7X2 276 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 NEFHP12036 1026 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 ATF1P18846 271 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 RSPO1Q2MKA7 263 aaPredicted RBP2.54□□□□□ -2
LIMA1-208ENST00000551691 SLC36A2Q495M3 483 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 DNAL1Q4LDG9 190 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 ACTBL2Q562R1 376 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 OR10J3Q5JRS4 329 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 AP1ARQ63HQ0 302 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 ZCCHC23Q6ZST2 131 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 OSR2Q8N2R0 312 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 OR4M1Q8NGD0 313 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 MFSD8Q8NHS3 518 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 RNASEH2CQ8TDP1 164 aaKnown RBP2.54□□□□□ -2
LIMA1-208ENST00000551691 BLNKQ8WV28 456 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 FLYWCH2Q96CP2 140 aaKnown RBP2.54□□□□□ -2
LIMA1-208ENST00000551691 MRAP2Q96G30 205 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 ZIM3Q96PE6 472 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 GPR22Q99680 433 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 WFDC6Q9BQY6 131 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 RHOFQ9HBH0 211 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 GLTPQ9NZD2 209 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 PRO0628Q9UI54 55 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 VAX2Q9UIW0 290 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 FBXL3Q9UKT7 428 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 CBY1Q9Y3M2 126 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 HILPDAQ9Y5L2 63 aa2.54□□□□□ -2
LIMA1-208ENST00000551691 FAT4Q6V0I7 4981 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 A0A087WUJ7 227 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 IGKV1D-43A0A0B4J1Z2 117 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 NUPR2A6NF83 97 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 VGLL3A8MV65 326 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 SERPINB7O75635 380 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 SCO1O75880 301 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 AHSA1O95433 338 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 FSTL3O95633 263 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 TRBV12-3P01733 135 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 OCM2P0CE71 109 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 IGHV1-8P0DP01 117 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 RCVRNP35243 200 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 SRP9P49458 86 aaKnown RBP2.53□□□□□ -2
LIMA1-208ENST00000551691 TAS2R31P59538 309 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 CD164Q04900 197 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 FUT5Q11128 374 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 SPA17Q15506 151 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 ZNF181Q2M3W8 571 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 CEACAM21Q3KPI0 293 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 SPIN4Q56A73 249 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 TMEM236Q5W0B7 351 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 TMEM256Q8N2U0 113 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 LINC00612Q8N6U2 182 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 LFNGQ8NES3 379 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 OR11H1Q8NG94 326 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 OR13G1Q8NGZ3 307 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 RPS4Y2Q8TD47 263 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 MAGOHBQ96A72 148 aaKnown RBP2.53□□□□□ -2
LIMA1-208ENST00000551691 PPCDCQ96CD2 204 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 CMTM5Q96DZ9 223 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 SMIM8Q96KF7 97 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 TUBA4BQ9H853 241 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 SPANXB1Q9NS25 103 aaPredicted RBP2.53□□□□□ -2
LIMA1-208ENST00000551691 RBFOX1Q9NWB1 397 aaKnown RBP2.53□□□□□ -2
LIMA1-208ENST00000551691 RPS6KB2Q9UBS0 482 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 TP53TG3Q9ULZ0 132 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 SLC35A3Q9Y2D2 325 aa2.53□□□□□ -2
LIMA1-208ENST00000551691 KLK5Q9Y337 293 aaPredicted RBP2.53□□□□□ -2
LIMA1-208ENST00000551691 FSIP2Q5CZC0 6907 aa2.53□□□□□ -2.01
LIMA1-208ENST00000551691 FAT3Q8TDW7 4589 aa2.52□□□□□ -2.01
LIMA1-208ENST00000551691 IGKV1D-42A0A075B6H8 117 aa2.52□□□□□ -2.01
LIMA1-208ENST00000551691 TRAV38-1A0A0B4J264 116 aa2.52□□□□□ -2.01
LIMA1-208ENST00000551691 LOC102725191A0A1B0GVB3 256 aa2.52□□□□□ -2.01
LIMA1-208ENST00000551691 KRBOX1C9JBD0 128 aa2.52□□□□□ -2.01
LIMA1-208ENST00000551691 CDIPTO14735 213 aa2.52□□□□□ -2.01
LIMA1-208ENST00000551691 RGS5O15539 181 aa2.52□□□□□ -2.01
LIMA1-208ENST00000551691 NDUFB3O43676 98 aa2.52□□□□□ -2.01
LIMA1-208ENST00000551691 DHRS3O75911 302 aa2.52□□□□□ -2.01
LIMA1-208ENST00000551691 IFI6P09912 130 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms