RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 RAB9AP51151 201 aa16.52■□□□□ 0.24
VPS29-206ENST00000549578 CD83Q01151 205 aa16.52■□□□□ 0.24
VPS29-206ENST00000549578 KHDC1LQ5JSQ8 128 aa16.52■□□□□ 0.24
VPS29-206ENST00000549578 GSG1LQ6UXU4 331 aa16.52■□□□□ 0.24
VPS29-206ENST00000549578 MRPL41Q8IXM3 137 aaKnown RBP16.52■□□□□ 0.24
VPS29-206ENST00000549578 RNF152Q8N8N0 203 aa16.52■□□□□ 0.24
VPS29-206ENST00000549578 CITED1Q99966 193 aa16.52■□□□□ 0.24
VPS29-206ENST00000549578 TCRBV4S1A1TA0A5B7 111 aa16.51■□□□□ 0.23
VPS29-206ENST00000549578 FAM90A26D6RGX4 464 aa16.51■□□□□ 0.23
VPS29-206ENST00000549578 TRGV3P03979 118 aa16.51■□□□□ 0.23
VPS29-206ENST00000549578 DEFA4P12838 97 aa16.51■□□□□ 0.23
VPS29-206ENST00000549578 TPPP2P59282 170 aa16.51■□□□□ 0.23
VPS29-206ENST00000549578 ERHP84090 104 aaKnown RBP16.51■□□□□ 0.23
VPS29-206ENST00000549578 C2orf50Q96LR7 162 aa16.51■□□□□ 0.23
VPS29-206ENST00000549578 MGAT4CQ9UBM8 478 aa16.51■□□□□ 0.23
VPS29-206ENST00000549578 H3BUA1 57 aa16.5■□□□□ 0.23
VPS29-206ENST00000549578 SCGB1D2O95969 90 aa16.5■□□□□ 0.23
VPS29-206ENST00000549578 DTD1Q8TEA8 209 aa16.5■□□□□ 0.23
VPS29-206ENST00000549578 FANCD2OSQ96PS1 177 aa16.5■□□□□ 0.23
VPS29-206ENST00000549578 P2RX4Q99571 388 aa16.5■□□□□ 0.23
VPS29-206ENST00000549578 HEYLQ9NQ87 328 aaPredicted RBP16.5■□□□□ 0.23
VPS29-206ENST00000549578 DMRT1Q9Y5R6 373 aa16.5■□□□□ 0.23
VPS29-206ENST00000549578 F11RQ9Y624 299 aaKnown RBP16.5■□□□□ 0.23
VPS29-206ENST00000549578 INS-IGF2F8WCM5 200 aa16.5■□□□□ 0.23
VPS29-206ENST00000549578 NKX2-1P43699 371 aaPredicted RBP16.5■□□□□ 0.23
VPS29-206ENST00000549578 MFAP2P55001 183 aa16.5■□□□□ 0.23
VPS29-206ENST00000549578 ID3Q02535 119 aa16.5■□□□□ 0.23
VPS29-206ENST00000549578 SLA2Q9H6Q3 261 aa16.5■□□□□ 0.23
VPS29-206ENST00000549578 A0A1W2PRX2 142 aa16.49■□□□□ 0.23
VPS29-206ENST00000549578 OR2J3O76001 311 aa16.49■□□□□ 0.23
VPS29-206ENST00000549578 BRI3O95415 125 aa16.49■□□□□ 0.23
VPS29-206ENST00000549578 IAPPP10997 89 aa16.49■□□□□ 0.23
VPS29-206ENST00000549578 H2BFSP57053 126 aa16.49■□□□□ 0.23
VPS29-206ENST00000549578 POLR2GP62487 172 aaKnown RBP eCLIP16.49■□□□□ 0.23
VPS29-206ENST00000549578 KIAA0141Q14154 515 aaPredicted RBP16.49■□□□□ 0.23
VPS29-206ENST00000549578 MYOZ3Q8TDC0 251 aa16.49■□□□□ 0.23
VPS29-206ENST00000549578 MED28Q9H204 178 aa16.49■□□□□ 0.23
VPS29-206ENST00000549578 IGLV11-55A0A075B6I3 123 aa16.48■□□□□ 0.23
VPS29-206ENST00000549578 TRBV9A0A0B4J1U6 114 aa16.48■□□□□ 0.23
VPS29-206ENST00000549578 SYNGR2O43760 224 aa16.48■□□□□ 0.23
VPS29-206ENST00000549578 SNCAP37840 140 aa16.48■□□□□ 0.23
VPS29-206ENST00000549578 RHOGP84095 191 aa16.48■□□□□ 0.23
VPS29-206ENST00000549578 ZNF114Q8NC26 417 aa16.48■□□□□ 0.23
VPS29-206ENST00000549578 HIPK2Q9H2X6 1198 aa16.48■□□□□ 0.23
VPS29-206ENST00000549578 MED6O75586 246 aa16.47■□□□□ 0.23
VPS29-206ENST00000549578 MBPP02686 304 aaPredicted RBP16.47■□□□□ 0.23
VPS29-206ENST00000549578 RNASE2P10153 161 aaKnown RBP16.47■□□□□ 0.23
VPS29-206ENST00000549578 CXCL3P19876 107 aa16.47■□□□□ 0.23
VPS29-206ENST00000549578 RPL23AP62750 156 aaKnown RBP16.47■□□□□ 0.23
VPS29-206ENST00000549578 FCN2Q15485 313 aa16.47■□□□□ 0.23
VPS29-206ENST00000549578 SLC25A24Q6NUK1 477 aa16.47■□□□□ 0.23
VPS29-206ENST00000549578 SHISA2Q6UWI4 295 aa16.47■□□□□ 0.23
VPS29-206ENST00000549578 C18orf65Q6ZTR6 163 aa16.47■□□□□ 0.23
VPS29-206ENST00000549578 ZNF491Q8N8L2 437 aa16.47■□□□□ 0.23
VPS29-206ENST00000549578 OR1P1Q8NH06 330 aa16.47■□□□□ 0.23
VPS29-206ENST00000549578 WDR89Q96FK6 387 aaPredicted RBP16.47■□□□□ 0.23
VPS29-206ENST00000549578 TSSC4Q9Y5U2 329 aaPredicted RBP16.47■□□□□ 0.23
VPS29-206ENST00000549578 WRBO00258 174 aa16.46■□□□□ 0.23
VPS29-206ENST00000549578 SSSCA1O60232 199 aa16.46■□□□□ 0.23
VPS29-206ENST00000549578 NSUN5P1Q3KNT7 163 aa16.46■□□□□ 0.23
VPS29-206ENST00000549578 OR11H7Q8NGC8 314 aa16.46■□□□□ 0.23
VPS29-206ENST00000549578 FBXL7Q9UJT9 491 aa16.46■□□□□ 0.23
VPS29-206ENST00000549578 ADARB2-AS1A8MUL3 147 aa16.45■□□□□ 0.22
VPS29-206ENST00000549578 NDUFB8O95169 186 aa16.45■□□□□ 0.22
VPS29-206ENST00000549578 IGHV3-11P01762 117 aa16.45■□□□□ 0.22
VPS29-206ENST00000549578 HIST1H1BP16401 226 aaKnown RBP16.45■□□□□ 0.22
VPS29-206ENST00000549578 RRAS2P62070 204 aaPredicted RBP16.45■□□□□ 0.22
VPS29-206ENST00000549578 IL15RAQ13261 267 aa16.45■□□□□ 0.22
VPS29-206ENST00000549578 KLK9Q2XQG4 91 aa16.45■□□□□ 0.22
VPS29-206ENST00000549578 BSXQ3C1V8 233 aa16.45■□□□□ 0.22
VPS29-206ENST00000549578 NECAP1Q8NC96 275 aa16.45■□□□□ 0.22
VPS29-206ENST00000549578 SLC24A4Q8NFF2 622 aa16.45■□□□□ 0.22
VPS29-206ENST00000549578 OR5B12Q96R08 314 aa16.45■□□□□ 0.22
VPS29-206ENST00000549578 GNB4Q9HAV0 340 aa16.45■□□□□ 0.22
VPS29-206ENST00000549578 ZFP57Q9NU63 452 aa16.45■□□□□ 0.22
VPS29-206ENST00000549578 KLK9Q9UKQ9 250 aa16.45■□□□□ 0.22
VPS29-206ENST00000549578 RCL1Q9Y2P8 373 aaKnown RBP16.45■□□□□ 0.22
VPS29-206ENST00000549578 FAM223BA6NKX1 122 aa16.45■□□□□ 0.22
VPS29-206ENST00000549578 HTR2BP41595 481 aa16.45■□□□□ 0.22
VPS29-206ENST00000549578 CDX1P47902 265 aaPredicted RBP16.45■□□□□ 0.22
VPS29-206ENST00000549578 C15orf32Q32M92 178 aa16.45■□□□□ 0.22
VPS29-206ENST00000549578 NDUFA11Q86Y39 141 aa16.45■□□□□ 0.22
VPS29-206ENST00000549578 FAM223AQ8IWN6 122 aa16.45■□□□□ 0.22
VPS29-206ENST00000549578 MISP3Q96FF7 219 aa16.45■□□□□ 0.22
VPS29-206ENST00000549578 UBE2E2Q96LR5 201 aa16.45■□□□□ 0.22
VPS29-206ENST00000549578 LSM5Q9Y4Y9 91 aaKnown RBP16.45■□□□□ 0.22
VPS29-206ENST00000549578 NUDT19A8MXV4 375 aa16.44■□□□□ 0.22
VPS29-206ENST00000549578 CYB5BO43169 146 aa16.44■□□□□ 0.22
VPS29-206ENST00000549578 IFNA10P01566 189 aa16.44■□□□□ 0.22
VPS29-206ENST00000549578 NPY1RP25929 384 aa16.44■□□□□ 0.22
VPS29-206ENST00000549578 SUB1P53999 127 aaKnown RBP eCLIP16.44■□□□□ 0.225e-6■■■■■ 28.3
VPS29-206ENST00000549578 S100A10P60903 97 aa16.44■□□□□ 0.22
VPS29-206ENST00000549578 RAB32Q13637 225 aa16.44■□□□□ 0.22
VPS29-206ENST00000549578 KLHL30-AS1Q8NEE0 82 aa16.44■□□□□ 0.22
VPS29-206ENST00000549578 OR1L6Q8NGR2 347 aa16.44■□□□□ 0.22
VPS29-206ENST00000549578 TMEM170AQ8WVE7 144 aa16.44■□□□□ 0.22
VPS29-206ENST00000549578 CIB3Q96Q77 187 aaPredicted RBP16.44■□□□□ 0.22
VPS29-206ENST00000549578 NMES1Q9C002 83 aa16.44■□□□□ 0.22
VPS29-206ENST00000549578 S4R3C0 116 aa16.44■□□□□ 0.22
VPS29-206ENST00000549578 A0A0G2JLM5 398 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms