RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 HIST1H2BMQ99879 126 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 COMMD5Q9GZQ3 224 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 FBXL12Q9NXK8 326 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 SCAF11Q99590 1463 aaKnown RBP1.5□□□□□ -2.17
VPS29-205ENST00000548539 ICE1Q9Y2F5 2266 aa1.5□□□□□ -2.17
VPS29-205ENST00000548539 A0A087WUJ7 227 aa1.5□□□□□ -2.17
VPS29-205ENST00000548539 TRBV10-2A0A0K0K1G8 114 aa1.5□□□□□ -2.17
VPS29-205ENST00000548539 FAM236DA0A1B0GTK5 79 aa1.5□□□□□ -2.17
VPS29-205ENST00000548539 IRGMA1A4Y4 181 aa1.5□□□□□ -2.17
VPS29-205ENST00000548539 TMEM114B3SHH9 223 aa1.5□□□□□ -2.17
VPS29-205ENST00000548539 CNIH1O95406 144 aa1.5□□□□□ -2.17
VPS29-205ENST00000548539 CRYZL1O95825 349 aa1.5□□□□□ -2.17
VPS29-205ENST00000548539 CRPP02741 224 aa1.5□□□□□ -2.17
VPS29-205ENST00000548539 FAM236CP0DP71 79 aa1.5□□□□□ -2.17
VPS29-205ENST00000548539 GPX2P18283 190 aa1.5□□□□□ -2.17
VPS29-205ENST00000548539 MAGEA12P43365 314 aa1.5□□□□□ -2.17
VPS29-205ENST00000548539 RUNX1Q01196 453 aa1.5□□□□□ -2.17
VPS29-205ENST00000548539 ARHGAP11BQ3KRB8 267 aa1.5□□□□□ -2.17
VPS29-205ENST00000548539 RPL22L1Q6P5R6 122 aaKnown RBP1.5□□□□□ -2.17
VPS29-205ENST00000548539 MCFD2Q8NI22 146 aa1.5□□□□□ -2.17
VPS29-205ENST00000548539 ZNF563Q8TA94 476 aa1.5□□□□□ -2.17
VPS29-205ENST00000548539 Q96M85 177 aa1.5□□□□□ -2.17
VPS29-205ENST00000548539 NIPSNAP1Q9BPW8 284 aa1.5□□□□□ -2.17
VPS29-205ENST00000548539 TMEM147Q9BVK8 224 aa1.5□□□□□ -2.17
VPS29-205ENST00000548539 MRPL32Q9BYC8 188 aaKnown RBP1.5□□□□□ -2.17
VPS29-205ENST00000548539 TRAV26-2A0A0B4J265 109 aa1.49□□□□□ -2.17
VPS29-205ENST00000548539 PQLC2LA1A4F0 135 aa1.49□□□□□ -2.17
VPS29-205ENST00000548539 TTRP02766 147 aa1.49□□□□□ -2.17
VPS29-205ENST00000548539 ZNF705BP0CI00 300 aaPredicted RBP1.49□□□□□ -2.17
VPS29-205ENST00000548539 C9orf163Q8N9P6 203 aa1.49□□□□□ -2.17
VPS29-205ENST00000548539 OR8B3Q8NGG8 313 aa1.49□□□□□ -2.17
VPS29-205ENST00000548539 BAIAP2Q9UQB8 552 aa1.49□□□□□ -2.17
VPS29-205ENST00000548539 PRELID3BQ9Y3B1 194 aa1.49□□□□□ -2.17
VPS29-205ENST00000548539 OTOGLQ3ZCN5 2332 aa1.49□□□□□ -2.17
VPS29-205ENST00000548539 EXOC1LA0A1B0GW35 172 aa1.48□□□□□ -2.17
VPS29-205ENST00000548539 DPRXA6NFQ7 191 aa1.48□□□□□ -2.17
VPS29-205ENST00000548539 IBA57-AS1B1ANH7 110 aa1.48□□□□□ -2.17
VPS29-205ENST00000548539 UBBP0CG47 229 aa1.48□□□□□ -2.17
VPS29-205ENST00000548539 NFYAP23511 347 aaPredicted RBP1.48□□□□□ -2.17
VPS29-205ENST00000548539 AKR1C3P42330 323 aa1.48□□□□□ -2.17
VPS29-205ENST00000548539 SRSF6Q13247 344 aaKnown RBP1.48□□□□□ -2.17
VPS29-205ENST00000548539 FP248Q71RG6 208 aaPredicted RBP1.48□□□□□ -2.17
VPS29-205ENST00000548539 CLVS1Q8IUQ0 354 aaPredicted RBP1.48□□□□□ -2.17
VPS29-205ENST00000548539 RASSF5Q8WWW0 418 aa1.48□□□□□ -2.17
VPS29-205ENST00000548539 DNAJC9Q8WXX5 260 aa1.48□□□□□ -2.17
VPS29-205ENST00000548539 TMEM106AQ96A25 262 aa1.48□□□□□ -2.17
VPS29-205ENST00000548539 TSPAN32Q96QS1 320 aa1.48□□□□□ -2.17
VPS29-205ENST00000548539 DCSTAMPQ9H295 470 aa1.48□□□□□ -2.17
VPS29-205ENST00000548539 TMEM56-RWDD3S4R434 201 aa1.48□□□□□ -2.17
VPS29-205ENST00000548539 DISP1Q96F81 1524 aa1.48□□□□□ -2.17
VPS29-205ENST00000548539 HECW2Q9P2P5 1572 aa1.47□□□□□ -2.17
VPS29-205ENST00000548539 TRAV9-1A0A075B6T8 112 aa1.47□□□□□ -2.17
VPS29-205ENST00000548539 TRBV6-5A0A0K0K1A5 114 aa1.47□□□□□ -2.17
VPS29-205ENST00000548539 SDCBPO00560 298 aaPredicted RBP1.47□□□□□ -2.17
VPS29-205ENST00000548539 PMP2P02689 132 aa1.47□□□□□ -2.17
VPS29-205ENST00000548539 PRB1P04280 392 aa1.47□□□□□ -2.17
VPS29-205ENST00000548539 FXYD2P54710 66 aa1.47□□□□□ -2.17
VPS29-205ENST00000548539 AP3S2P59780 193 aa1.47□□□□□ -2.17
VPS29-205ENST00000548539 CDK10Q15131 360 aa1.47□□□□□ -2.17
VPS29-205ENST00000548539 NDUFA5Q16718 116 aa1.47□□□□□ -2.17
VPS29-205ENST00000548539 DHFR2Q86XF0 187 aa1.47□□□□□ -2.17
VPS29-205ENST00000548539 WFDC11Q8NEX6 87 aa1.47□□□□□ -2.17
VPS29-205ENST00000548539 OR13C4Q8NGS5 318 aa1.47□□□□□ -2.17
VPS29-205ENST00000548539 H1FXQ92522 213 aaKnown RBP1.47□□□□□ -2.17
VPS29-205ENST00000548539 TOMM6Q96B49 74 aa1.47□□□□□ -2.17
VPS29-205ENST00000548539 GINS4Q9BRT9 223 aa1.47□□□□□ -2.17
VPS29-205ENST00000548539 RNASE7Q9H1E1 156 aaKnown RBP1.47□□□□□ -2.17
VPS29-205ENST00000548539 C14orf105Q9NVL8 296 aa1.47□□□□□ -2.17
VPS29-205ENST00000548539 SLC22A13Q9Y226 551 aa1.47□□□□□ -2.17
VPS29-205ENST00000548539 PTPRSQ13332 1948 aa1.46□□□□□ -2.18
VPS29-205ENST00000548539 TTC21AQ8NDW8 1320 aa1.46□□□□□ -2.18
VPS29-205ENST00000548539 RALGAPA2Q2PPJ7 1873 aa1.46□□□□□ -2.18
VPS29-205ENST00000548539 CPAMD8Q8IZJ3 1885 aa1.46□□□□□ -2.18
VPS29-205ENST00000548539 CACNA1GO43497 2377 aa1.46□□□□□ -2.18
VPS29-205ENST00000548539 PIRO00625 290 aa1.46□□□□□ -2.18
VPS29-205ENST00000548539 ZNF80P51504 273 aaPredicted RBP1.46□□□□□ -2.18
VPS29-205ENST00000548539 FADDQ13158 208 aa1.46□□□□□ -2.18
VPS29-205ENST00000548539 STX5Q13190 355 aa1.46□□□□□ -2.18
VPS29-205ENST00000548539 EDDM3AQ14507 147 aa1.46□□□□□ -2.18
VPS29-205ENST00000548539 ZNF345Q14585 488 aa1.46□□□□□ -2.18
VPS29-205ENST00000548539 ELOBQ15370 118 aa1.46□□□□□ -2.18
VPS29-205ENST00000548539 Q1T7F1 81 aa1.46□□□□□ -2.18
VPS29-205ENST00000548539 SPANXN3Q5MJ09 141 aa1.46□□□□□ -2.18
VPS29-205ENST00000548539 LCN15Q6UWW0 184 aa1.46□□□□□ -2.18
VPS29-205ENST00000548539 ZNF439Q8NDP4 499 aa1.46□□□□□ -2.18
VPS29-205ENST00000548539 MBD3L1Q8WWY6 194 aa1.46□□□□□ -2.18
VPS29-205ENST00000548539 C11orf40Q8WZ69 217 aa1.46□□□□□ -2.18
VPS29-205ENST00000548539 SCGB3A1Q96QR1 104 aa1.46□□□□□ -2.18
VPS29-205ENST00000548539 CMSS1Q9BQ75 279 aaKnown RBP1.46□□□□□ -2.18
VPS29-205ENST00000548539 GLTPQ9NZD2 209 aa1.46□□□□□ -2.18
VPS29-205ENST00000548539 HECW1Q76N89 1606 aa1.45□□□□□ -2.18
VPS29-205ENST00000548539 MEIKINA0A087WXM9 373 aa1.45□□□□□ -2.18
VPS29-205ENST00000548539 hADV38S2A0JD32 116 aa1.45□□□□□ -2.18
VPS29-205ENST00000548539 CRYGAP11844 174 aa1.45□□□□□ -2.18
VPS29-205ENST00000548539 DEFA3P59666 94 aa1.45□□□□□ -2.18
VPS29-205ENST00000548539 NNATQ16517 81 aa1.45□□□□□ -2.18
VPS29-205ENST00000548539 AAED1Q7RTV5 226 aa1.45□□□□□ -2.18
VPS29-205ENST00000548539 KRT222Q8N1A0 295 aa1.45□□□□□ -2.18
VPS29-205ENST00000548539 BORCS7Q96B45 105 aa1.45□□□□□ -2.18
VPS29-205ENST00000548539 DGCR14Q96DF8 476 aaKnown RBP1.45□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms